View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4768_low_2 (Length: 418)
Name: NF4768_low_2
Description: NF4768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4768_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 18 - 414
Target Start/End: Complemental strand, 47736063 - 47735666
Alignment:
| Q |
18 |
caattctcaactaattttgcatattatctttttgtacataggtctatctcttcaggtggtgnnnnnnntgtttctgatagcatcaaagtcttggtaagtc |
117 |
Q |
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| T |
47736063 |
caattctcaactaattttgcatattatctttttgtacataggtctatctcttcaggtggtgaaaaaaatgtttctgatagcatcaaagtcttggtaagtc |
47735964 |
T |
|
| Q |
118 |
ggctcattctactnnnnnnntaaataaattaagttaccaacggaaattatggaccgaaaaaa-tgatatatgtaacacttagcaacgaaattatgaacgg |
216 |
Q |
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||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
47735963 |
ggctcattctactaaaaaaataaataaattgagttaccaacggaaattatggaccgaaaaaaatgatatatgtaacacttagcaacgaaattatgaacgg |
47735864 |
T |
|
| Q |
217 |
atttcatttttagtactgacaatgtaagaatttgcagggaacggcgttactctttgatttaaaccatcaattaccattgacaatggaagttgaatccttg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47735863 |
atttcatttttagtactgacaatgtaagaatttgcagggaacggcgttactctttgatttaaaccatcaattaccattgacaatggaagttgaatccttg |
47735764 |
T |
|
| Q |
317 |
gaatttgttatagcaaggtggccattctttgtcttcttaggtggttcaatgttctgtctcctctctagcagcatttgtcacctattttcatctcactc |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
47735763 |
gaatttgttatagcaaggtggccattctttgtcttcttaggtggttcaatgttctgtctcctctctagcagcatttgtcacctattttcatgtcactc |
47735666 |
T |
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