View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4768_low_3 (Length: 383)

Name: NF4768_low_3
Description: NF4768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4768_low_3
NF4768_low_3
[»] chr8 (3 HSPs)
chr8 (107-366)||(8567489-8567749)
chr8 (145-366)||(15917176-15917397)
chr8 (11-82)||(8567392-8567463)
[»] chr6 (4 HSPs)
chr6 (140-366)||(7022741-7022967)
chr6 (140-366)||(34252229-34252457)
chr6 (140-366)||(26292202-26292428)
chr6 (140-366)||(10570571-10570795)
[»] chr1 (4 HSPs)
chr1 (140-366)||(5171181-5171407)
chr1 (175-366)||(6770939-6771130)
chr1 (145-366)||(33931407-33931630)
chr1 (189-341)||(39989262-39989413)
[»] chr7 (4 HSPs)
chr7 (140-366)||(5952806-5953032)
chr7 (143-306)||(38024628-38024791)
chr7 (189-268)||(33192694-33192773)
chr7 (249-365)||(13583464-13583578)
[»] chr4 (3 HSPs)
chr4 (140-365)||(19816260-19816485)
chr4 (144-327)||(1804492-1804677)
chr4 (140-261)||(21375060-21375181)
[»] chr3 (3 HSPs)
chr3 (141-366)||(55428877-55429096)
chr3 (140-366)||(29018526-29018754)
chr3 (172-362)||(17065116-17065307)
[»] chr5 (2 HSPs)
chr5 (167-342)||(28175229-28175404)
chr5 (176-366)||(35946712-35946897)
[»] chr2 (2 HSPs)
chr2 (144-305)||(9388793-9388954)
chr2 (204-324)||(9992905-9993025)


Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-103; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 107 - 366
Target Start/End: Original strand, 8567489 - 8567749
Alignment:
Q  107 ctataattttaggcaagcaaatgttacagttgaag--ggcaaaaaatccaagacttaagagcatctaaagaagaagcatcgtgtttagcaagtcaatatg 204  Q
    ||||||||||||||||| || | ||||||||||||  ||||||||||||||||||| ||||||||  |||||||||||||||  ||||||||||||| ||    
T  8567489 ctataattttaggcaagtaa-tattacagttgaagagggcaaaaaatccaagactttagagcatccgaagaagaagcatcgtacttagcaagtcaatctg 8567587  T
Q  205 cacacttgttgccttaacagagggtatgatgaaaattaataattcaatctcgatgttacagttggacaatctgactaatcaaaggggcatgaagatgatg 304  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8567588 cacactcgttgccttaacagagggtatgatgaaaattaataattcaatctcgatgttacagttggacaatctgactaatcaaaggagcatgaagatgatg 8567687  T
Q  305 aggttcgacatccgacatgattagatcaatagtcaccctagaatctgattcaagaataatgt 366  Q
    ||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||    
T  8567688 aggttcgacatccgacatgattagatcaaaagccaccatagaatctgattcaagaataatgt 8567749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 145 - 366
Target Start/End: Original strand, 15917176 - 15917397
Alignment:
Q  145 aaaaaatccaagacttaagagcatctaaagaagaagcatcgtgtttagcaagtcaatatgcacacttgttgccttaacagagggtatgatgaaaattaat 244  Q
    |||||||||||||||| |||||||   ||||||||||||| || |||||||| ||||  ||||||  ||| |||| || ||||||||||||||||||||     
T  15917176 aaaaaatccaagactttagagcatacgaagaagaagcatcatgcttagcaagccaatccgcacacgcgttaccttgacggagggtatgatgaaaattaac 15917275  T
Q  245 aattcaatctcgatgttacagttggacaatctgactaatcaaaggggcatgaagatgatgaggttcgacatccgacatgattagatcaatagtcacccta 344  Q
    ||| ||||||||||||| ||||||||||||||||||||| | ||| |||||  ||||||||| || ||||||||||||||||| ||||| || || ||||    
T  15917276 aatgcaatctcgatgttgcagttggacaatctgactaattagaggagcatggggatgatgagattggacatccgacatgattaaatcaagagccatccta 15917375  T
Q  345 gaatctgattcaagaataatgt 366  Q
     |||||||||||||||||||||    
T  15917376 aaatctgattcaagaataatgt 15917397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 8567392 - 8567463
Alignment:
Q  11 cacagagatagaaaaattagacataggtacgcgcgagagaaatcaaagtgagattagtattttttgttcaag 82  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||||| ||||||    
T  8567392 cacagagatagaaaaattagacagaggtacgcgcgagagaaatcaaaacgagattagtattttttcttcaag 8567463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 123; Significance: 4e-63; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 140 - 366
Target Start/End: Complemental strand, 7022967 - 7022741
Alignment:
Q  140 agggcaaaaaatccaagacttaagagcatctaaagaagaagcatcgtgtttagcaagtcaatatgcacacttgttgccttaacagagggtatgatgaaaa 239  Q
    |||||||| ||||||| |||| ||||||||  ||||||||||| | || |||||||||||||  ||||||| |||||||| || ||||||||||||||||    
T  7022967 agggcaaacaatccaatactttagagcatccgaagaagaagcaccatgcttagcaagtcaatccgcacactcgttgccttgacggagggtatgatgaaaa 7022868  T
Q  240 ttaataattcaatctcgatgttacagttggacaatctgactaatcaaaggggcatgaagatgatgaggttcgacatccgacatgattagatcaatagtca 339  Q
    |||| ||| ||||||||||||| ||||||||||||||||||||||| ||| |||||| ||||||||| || ||||||||||||||||| ||||| || ||    
T  7022867 ttaacaatccaatctcgatgttgcagttggacaatctgactaatcagaggagcatgaggatgatgagattggacatccgacatgattaaatcaagagcca 7022768  T
Q  340 ccctagaatctgattcaagaataatgt 366  Q
     |||||||||||| |||||||||||||    
T  7022767 tcctagaatctgactcaagaataatgt 7022741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 140 - 366
Target Start/End: Complemental strand, 34252457 - 34252229
Alignment:
Q  140 agggcaaaaaatccaagacttaagagcatctaaagaagaagcatcgtgtttagcaagtcaatatgcacacttgttgccttaacagagggtatgatgaaaa 239  Q
    |||||||| |||||||||||| ||||||||  ||||||||||| | || |||||||| ||||  ||||||  |||||||| || ||||||||||||||||    
T  34252457 agggcaaacaatccaagactttagagcatccgaagaagaagcaccatgcttagcaagccaatccgcacacccgttgccttgacggagggtatgatgaaaa 34252358  T
Q  240 ttaataattcaatctcgatgttacagttggacaatctgactaatcaaaggggcatgaagatgatgaggttcgacatcc--gacatgattagatcaatagt 337  Q
    |||| ||| ||||||||||||| ||||||||||||||||||||||| ||| |||||| |||||| || || |||||||  |||||||||| ||||| ||     
T  34252357 ttaacaatccaatctcgatgttgcagttggacaatctgactaatcagaggagcatgaggatgataagattggacatccgagacatgattaaatcaagagc 34252258  T
Q  338 caccctagaatctgattcaagaataatgt 366  Q
    || |||||||||| | |||||||||||||    
T  34252257 catcctagaatctcactcaagaataatgt 34252229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 140 - 366
Target Start/End: Original strand, 26292202 - 26292428
Alignment:
Q  140 agggcaaaaaatccaagacttaagagcatctaaagaagaagcatcgtgtttagcaagtcaatatgcacacttgttgccttaacagagggtatgatgaaaa 239  Q
    |||||||| ||||||||| || ||||||||  ||||||||||||  || |||||||| ||||  | |||||||||||||| || |||||| || ||||||    
T  26292202 agggcaaacaatccaagagtttagagcatccgaagaagaagcattatgcttagcaagccaatccgtacacttgttgccttgacggagggtctgttgaaaa 26292301  T
Q  240 ttaataattcaatctcgatgttacagttggacaatctgactaatcaaaggggcatgaagatgatgaggttcgacatccgacatgattagatcaatagtca 339  Q
    |||| ||| |||| |||||||| || ||||| |||| ||||||||| ||| |||||| ||||| ||| || ||||  ||||||| ||| ||||| || |     
T  26292302 ttaacaatccaatatcgatgttgcaattggaaaatccgactaatcagaggagcatgaggatgacgagattggacactcgacatgtttaaatcaagagccc 26292401  T
Q  340 ccctagaatctgattcaagaataatgt 366  Q
     ||||||||||||||||||||||||||    
T  26292402 tcctagaatctgattcaagaataatgt 26292428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 140 - 366
Target Start/End: Complemental strand, 10570795 - 10570571
Alignment:
Q  140 agggcaaaaaatccaagacttaagagcatctaaagaagaagcatcgtgtttagcaagtcaatatgcacacttgttgccttaacagagggtatgatgaaaa 239  Q
    ||||||||| ||| ||||||| | | ||||  ||||||||||| | || || ||||| |||| |||||  |||||||||||| ||||||||  |||||||    
T  10570795 agggcaaaatatctaagactttataacatccgaagaagaagcaccatgcttcgcaagccaatctgcac--ttgttgccttaatagagggtagaatgaaaa 10570698  T
Q  240 ttaataattcaatctcgatgttacagttggacaatctgactaatcaaaggggcatgaagatgatgaggttcgacatccgacatgattagatcaatagtca 339  Q
    |||| ||| ||||||||||||| |||||| || ||||||||||| | |||  || || ||||| |||||| || ||||||||| |||| || || || ||    
T  10570697 ttaacaatccaatctcgatgttgcagttgaactatctgactaataagaggaacacgatgatgacgaggttggatatccgacataattaaattaagagcca 10570598  T
Q  340 ccctagaatctgattcaagaataatgt 366  Q
     ||||||||||||||||||||||||||    
T  10570597 tcctagaatctgattcaagaataatgt 10570571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 119; Significance: 1e-60; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 140 - 366
Target Start/End: Complemental strand, 5171407 - 5171181
Alignment:
Q  140 agggcaaaaaatccaagacttaagagcatctaaagaagaagcatcgtgtttagcaagtcaatatgcacacttgttgccttaacagagggtatgatgaaaa 239  Q
    |||||||| |||||||||||| |||| |||  ||||||||||| | || |||||||| ||||  ||||||| |||||||| || |||||||| |||||||    
T  5171407 agggcaaacaatccaagactttagagtatccgaagaagaagcaccatgcttagcaagccaatccgcacactcgttgccttgacggagggtataatgaaaa 5171308  T
Q  240 ttaataattcaatctcgatgttacagttggacaatctgactaatcaaaggggcatgaagatgatgaggttcgacatccgacatgattagatcaatagtca 339  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||| ||| |||||| ||||||||| || ||||||||||||||||| ||||| || ||    
T  5171307 ttaacaattcaatctcgatgttgcagttggacaatctgactaatcagaggagcatgaggatgatgagattggacatccgacatgattaaatcaagagcca 5171208  T
Q  340 ccctagaatctgattcaagaataatgt 366  Q
     |||||||||||| |||||||||||||    
T  5171207 tcctagaatctgactcaagaataatgt 5171181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 175 - 366
Target Start/End: Complemental strand, 6771130 - 6770939
Alignment:
Q  175 aagaagcatcgtgtttagcaagtcaatatgcacacttgttgccttaacagagggtatgatgaaaattaataattcaatctcgatgttacagttggacaat 274  Q
    |||||||||| || |||||||| ||||  ||||||| ||| |||| || ||||| ||| ||||||| || ||||||||||||||||| ||||||||||||    
T  6771130 aagaagcatcatgcttagcaagccaatccgcacactcgttaccttgacggagggcatgctgaaaatgaacaattcaatctcgatgttgcagttggacaat 6771031  T
Q  275 ctgactaatcaaaggggcatgaagatgatgaggttcgacatccgacatgattagatcaatagtcaccctagaatctgattcaagaataatgt 366  Q
    ||||||||||| ||| |||||| ||||||||| |||||||| ||||||||||| ||||| || || |||| ||| |||||||||||||||||    
T  6771030 ctgactaatcagaggagcatgaggatgatgagattcgacattcgacatgattaaatcaagagccatcctataatttgattcaagaataatgt 6770939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 145 - 366
Target Start/End: Original strand, 33931407 - 33931630
Alignment:
Q  145 aaaaaatccaagacttaagagcatctaaagaagaagcatcgtgtttagcaagtcaatatgcacacttgttgccttaacagagggtatgatgaaaattaat 244  Q
    ||||||| |||||||| ||||||||  || |||||||| | ||| ||| || |||||  ||||||| |||||||| |  ||||||||||||||||| ||     
T  33931407 aaaaaattcaagactttagagcatccgaaaaagaagcaccttgtgtagtaattcaatccgcacactcgttgccttgatggagggtatgatgaaaataaaa 33931506  T
Q  245 aattcaatctcgatgttacagttggacaatctgactaatcaaaggggcatgaagatgatgaggttcgacatccgacatgattagatc--aatagtcaccc 342  Q
    |||  |||||||||||| |||||||| ||||  |||||||| ||  |||||| |||||||||||| ||||||||||||||||| |||  || ||||| ||    
T  33931507 aatctaatctcgatgttgcagttggagaatcaaactaatcagagaagcatgaggatgatgaggttggacatccgacatgattaaatcaaaagagtcatcc 33931606  T
Q  343 tagaatctgattcaagaataatgt 366  Q
    || |||||||||||| ||||||||    
T  33931607 taaaatctgattcaaaaataatgt 33931630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 189 - 341
Target Start/End: Complemental strand, 39989413 - 39989262
Alignment:
Q  189 ttagcaagtcaatatgcacacttgttgccttaacagaggg-tatgatgaaaattaataattcaatctcgatgttacagttggacaatctgactaatcaaa 287  Q
    |||||||| ||||  ||||||| ||||||||  | ||||| ||||||||||||||| ||| ||||||||||| | ||||| |||| ||| ||| |||| |    
T  39989413 ttagcaagccaatccgcacactcgttgccttggcggaggggtatgatgaaaattaacaatccaatctcgatgatgcagttagacattctaacttatcaga 39989314  T
Q  288 ggggcatgaagatgatgaggttcgacatccgacatgattagatcaatagtcacc 341  Q
    |  |||| | |||||||||||| |  |||| ||||||||||||||| |||||||    
T  39989313 gaagcataaggatgatgaggtttg--atccaacatgattagatcaagagtcacc 39989262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 107; Significance: 1e-53; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 140 - 366
Target Start/End: Original strand, 5952806 - 5953032
Alignment:
Q  140 agggcaaaaaatccaagacttaagagcatctaaagaagaagcatcgtgtttagcaagtcaatatgcacacttgttgccttaacagagggtatgatgaaaa 239  Q
    |||||| |||||||||||||| |||||||   ||||||||||| | || |||||||| |||| |||||||| ||| |||| ||  |||||||| ||||||    
T  5952806 agggcagaaaatccaagactttagagcattcgaagaagaagcaccatgcttagcaagccaatctgcacactcgttaccttgacgaagggtatgctgaaaa 5952905  T
Q  240 ttaataattcaatctcgatgttacagttggacaatctgactaatcaaaggggcatgaagatgatgaggttcgacatccgacatgattagatcaatagtca 339  Q
    | || ||| ||||||||||||| ||||||||||||||||||||||| ||| |||||| ||||||||| || ||||||||||||||||| |||||  | ||    
T  5952906 tgaacaatccaatctcgatgttgcagttggacaatctgactaatcataggagcatgaggatgatgagattggacatccgacatgattaaatcaagggcca 5953005  T
Q  340 ccctagaatctgattcaagaataatgt 366  Q
     ||||||||||||||||||||||||||    
T  5953006 tcctagaatctgattcaagaataatgt 5953032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 143 - 306
Target Start/End: Complemental strand, 38024791 - 38024628
Alignment:
Q  143 gcaaaaaatccaagacttaagagcatctaaagaagaagcatcgtgtttagcaagtcaatatgcacacttgttgccttaacagagggtatgatgaaaatta 242  Q
    ||||| ||||||| ||||  |||||||| ||||||||||||| || |||||||||||||  ||||||| |||||||| || |||||||||||||||||||    
T  38024791 gcaaacaatccaaaactttggagcatctgaagaagaagcatcatgcttagcaagtcaatccgcacactcgttgccttgacggagggtatgatgaaaatta 38024692  T
Q  243 ataattcaatctcgatgttacagttggacaatctgactaatcaaaggggcatgaagatgatgag 306  Q
    | ||| ||||||||||||| ||||||||||||||||||||||| ||| |||||| |||||||||    
T  38024691 acaatccaatctcgatgttgcagttggacaatctgactaatcagaggagcatgaggatgatgag 38024628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 189 - 268
Target Start/End: Complemental strand, 33192773 - 33192694
Alignment:
Q  189 ttagcaagtcaatatgcacacttgttgccttaacagagggtatgatgaaaattaataattcaatctcgatgttacagttg 268  Q
    |||||||| ||||  ||||||| ||| |||| || |||||||||||||||||||| ||||||||||||||||| ||||||    
T  33192773 ttagcaagccaattcgcacactcgtttccttgacggagggtatgatgaaaattaacaattcaatctcgatgttgcagttg 33192694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 249 - 365
Target Start/End: Complemental strand, 13583578 - 13583464
Alignment:
Q  249 caatctcgatgttacagttggacaatctgactaatcaaaggggcatgaagatgatgaggttcgacatccgacatgattagatcaatagtcaccctagaat 348  Q
    ||||||||||| |  || |||| ||||| | |||||||||| ||| |  ||||| ||||||  |||||| |||||||||||| |  || |||||||||||    
T  13583578 caatctcgatgatggagatggataatcttagtaatcaaaggagcaag--gatgacgaggttgaacatccaacatgattagataatgagccaccctagaat 13583481  T
Q  349 ctgattcaagaataatg 365  Q
    | |||||||||||||||    
T  13583480 cagattcaagaataatg 13583464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 6e-53; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 140 - 365
Target Start/End: Original strand, 19816260 - 19816485
Alignment:
Q  140 agggcaaaaaatccaagacttaagagcatctaaagaagaagcatcgtgtttagcaagtcaatatgcacacttgttgccttaacagagggtatgatgaaaa 239  Q
    ||||||||||||||||||||| ||| ||||  ||||||||||| | || |||||||| ||||  ||||||| ||| |||| || ||| ||||||||||||    
T  19816260 agggcaaaaaatccaagactttagatcatccgaagaagaagcaccatgcttagcaagccaatccgcacactcgttaccttgacggagagtatgatgaaaa 19816359  T
Q  240 ttaataattcaatctcgatgttacagttggacaatctgactaatcaaaggggcatgaagatgatgaggttcgacatccgacatgattagatcaatagtca 339  Q
    | || ||| |||||| |||||| |||||||||||||||||||||||  || |||||| ||||||||| ||| |||||||||||||||| ||||| || ||    
T  19816360 tgaacaatccaatcttgatgttgcagttggacaatctgactaatcaggggagcatgaggatgatgagattcaacatccgacatgattaaatcaagagcca 19816459  T
Q  340 ccctagaatctgattcaagaataatg 365  Q
     |||||||||||||||||||||||||    
T  19816460 tcctagaatctgattcaagaataatg 19816485  T

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Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 144 - 327
Target Start/End: Complemental strand, 1804677 - 1804492
Alignment:
Q  144 caaaaaatccaagacttaagagcatctaaagaagaagcatcgtgtttagcaagtcaatatgcacacttgttgccttaacagagg--gtatgatgaaaatt 241  Q
    |||| |||||||||||| |||| |||  ||||||||||| | || ||||||||||||| |||||||| ||| |||| || ||||  ||||||||||||||    
T  1804677 caaacaatccaagactttagagtatccgaagaagaagcaccatgcttagcaagtcaatctgcacactcgttaccttgacggaggctgtatgatgaaaatt 1804578  T
Q  242 aataattcaatctcgatgttacagttggacaatctgactaatcaaaggggcatgaagatgatgaggttcgacatccgacatgatta 327  Q
    || ||| |||| |||||||| ||| |||||||||| |||||||| | | |||||||||||||||| || |||||||||||| ||||    
T  1804577 aacaatccaatatcgatgttgcaggtggacaatctaactaatcagaagagcatgaagatgatgagcttggacatccgacataatta 1804492  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 140 - 261
Target Start/End: Complemental strand, 21375181 - 21375060
Alignment:
Q  140 agggcaaaaaatccaagacttaagagcatctaaagaagaagcatcgtgtttagcaagtcaatatgcacacttgttgccttaacagagggtatgatgaaaa 239  Q
    |||||||| |||||||||||| |||||||   ||||||||||| | || |||||||| ||||  ||||||| |||||||| |  || |||||||||||||    
T  21375181 agggcaaacaatccaagactttagagcattcgaagaagaagcaccatgcttagcaagccaatccgcacactcgttgccttgatggaaggtatgatgaaaa 21375082  T
Q  240 ttaataattcaatctcgatgtt 261  Q
    |||| |||  ||||||||||||    
T  21375081 ttaacaatctaatctcgatgtt 21375060  T

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Target: chr3 (Bit Score: 99; Significance: 9e-49; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 141 - 366
Target Start/End: Original strand, 55428877 - 55429096
Alignment:
Q  141 gggcaaaaaatccaagacttaagagcatctaaagaagaagcatcgtgtttagcaagtcaatatgcacacttgttgccttaacagagggtatgatgaaaat 240  Q
    |||||||||||||||||||| | |||||| ||| |||||||| | || |||||||| ||||  ||||||| ||| |||| || |||||||||||||||||    
T  55428877 gggcaaaaaatccaagactttaaagcatccaaataagaagcaccatgcttagcaagccaatccgcacactcgttaccttgacggagggtatgatgaaaat 55428976  T
Q  241 taataattcaatctcgatgttacagttggacaatctgactaatcaaaggggcatgaagatgatgaggttcgacatccgacatgattagatcaatagtcac 340  Q
     || ||| |||||| ||||||      |||||||||||||||||| ||| |||||| ||||||||| |||||||||||||||||||| |||||||| ||     
T  55428977 gaacaatccaatctagatgtt------ggacaatctgactaatcagaggagcatgaggatgatgagattcgacatccgacatgattaaatcaatagccat 55429070  T
Q  341 cctagaatctgattcaagaataatgt 366  Q
    ||| ||||||||||||||||||||||    
T  55429071 cctggaatctgattcaagaataatgt 55429096  T

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Target: chr3; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 140 - 366
Target Start/End: Original strand, 29018526 - 29018754
Alignment:
Q  140 agggcaaaaaatccaagacttaagagcatctaaagaagaagcatcgtgtttagcaagtcaatatgcacac--ttgttgccttaacagagggtatgatgaa 237  Q
    |||||||||| ||||||| || ||||||| | ||||||||||| | || || ||||| ||||  ||||||  | |||||||| || || || ||| ||||    
T  29018526 agggcaaaaactccaagattttagagcatatgaagaagaagcaccatgctttgcaagccaatccgcacacactcgttgccttgacggatggaatgttgaa 29018625  T
Q  238 aattaataattcaatctcgatgttacagttggacaatctgactaatcaaaggggcatgaagatgatgaggttcgacatccgacatgattagatcaatagt 337  Q
    |||| | ||| |||||||||||||  |||||||||||||||||||||| ||| |||||| |||||||||||| ||||||||||||||||||||||| |||    
T  29018626 aattgacaatccaatctcgatgttgtagttggacaatctgactaatcagaggagcatgaggatgatgaggttggacatccgacatgattagatcaagagt 29018725  T
Q  338 caccctagaatctgattcaagaataatgt 366  Q
    |||| |||||||| |||||||||||||||    
T  29018726 caccttagaatctaattcaagaataatgt 29018754  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 172 - 362
Target Start/End: Original strand, 17065116 - 17065307
Alignment:
Q  172 aagaagaagcatcgtgtttagcaagtcaatatgcacacttgttgccttaacagagggtatgatgaaaattaataattcaatctcgatgttacagttggac 271  Q
    ||||||||||| | ||||||||||||||||  | ||||| |||||||| |  ||| |||||||||||||||| ||| | |||||||   |  || |||||    
T  17065116 aagaagaagcaccatgtttagcaagtcaattcgtacactcgttgccttgatggagagtatgatgaaaattaacaatcctatctcgacaatggagctggac 17065215  T
Q  272 aatctgactaatcaaagggg-catgaagatgatgaggttcgacatccgacatgattagatcaatagtcaccctagaatctgattcaagaata 362  Q
    ||||| |||||| |||     ||  | |||||||||||| || || |||||| |||| ||||| ||||||||||||||| ||||||||||||    
T  17065216 aatctaactaattaaaaaaaacaaaaggatgatgaggttggaaattcgacataattaaatcaagagtcaccctagaatcggattcaagaata 17065307  T

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Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 167 - 342
Target Start/End: Complemental strand, 28175404 - 28175229
Alignment:
Q  167 atctaaagaagaagcatcgtgtttagcaagtcaatatgcacacttgttgccttaacagagggtatgatgaaaattaataattcaatctcgatgttacagt 266  Q
    |||| |||||||| || | || ||| |||| |||| |||||||| |||||||| || |||||||||||||||||||| | | |||||||||||||  | |    
T  28175404 atctgaagaagaaacaccatgcttaacaagccaatttgcacactcgttgccttgacggagggtatgatgaaaattaacattccaatctcgatgttgtaat 28175305  T
Q  267 tggacaatctgactaatcaaaggggcatgaagatgatgaggttcgacatccgacatgattagatcaatagtcaccc 342  Q
    |||||||||| |||||| | ||| ||||||| |||||||||||  |||||||||| ||||||||||| || |||||    
T  28175304 tggacaatcttactaataagaggagcatgaaaatgatgaggttgaacatccgacaagattagatcaagagccaccc 28175229  T

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Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 176 - 366
Target Start/End: Original strand, 35946712 - 35946897
Alignment:
Q  176 agaagcatcgtgtttagcaagtcaatatgcacacttgttgccttaacagagggtatgatgaaaattaataattcaatctcgatgttacagttggacaatc 275  Q
    |||||||| ||| |||||||||||||  ||||||| |||||||| ||||| ||     |||||| ||| |||||||| |||||| | || |||| |||||    
T  35946712 agaagcattgtgcttagcaagtcaatccgcacactcgttgccttgacagaagg-----tgaaaaataacaattcaatttcgatgatgcaattgggcaatc 35946806  T
Q  276 tgactaatcaaaggggcatgaagatgatgaggttcgacatccgacatgattagatcaatagtcaccctagaatctgattcaagaataatgt 366  Q
    |||||||||||||| ||||   |||||||| ||| | ||||| ||||||||||||||| ||||| || ||||| |||||||||||||||||    
T  35946807 tgactaatcaaaggagcatatggatgatgatgttgggcatccaacatgattagatcaagagtcatccaagaatatgattcaagaataatgt 35946897  T

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Target: chr2 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 144 - 305
Target Start/End: Original strand, 9388793 - 9388954
Alignment:
Q  144 caaaaaatccaagacttaagagcatctaaagaagaagcatcgtgtttagcaagtcaatatgcacacttgttgccttaacagagggtatgatgaaaattaa 243  Q
    |||| ||||||| |||| ||||||||  ||||||||||| | |  |||||||| |||| ||||||||   || ||| |||||||||||||||||||||||    
T  9388793 caaacaatccaaaactttagagcatccgaagaagaagcaccatacttagcaagccaatctgcacactcaatgtcttgacagagggtatgatgaaaattaa 9388892  T
Q  244 taattcaatctcgatgttacagttggacaatctgactaatcaaaggggcatgaagatgatga 305  Q
     ||| ||||||||||||| ||||||||||||||||||||| | ||| |||| | ||||||||    
T  9388893 caatccaatctcgatgttgcagttggacaatctgactaataagaggagcatcaggatgatga 9388954  T

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Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 204 - 324
Target Start/End: Original strand, 9992905 - 9993025
Alignment:
Q  204 gcacacttgttgccttaacagagggtatgatgaaaattaataattcaatctcgatgttacagttggacaatctgactaatcaaaggggcatgaagatgat 303  Q
    ||||||| |||||||| ||  ||||||||||||||||||| ||| ||||||||| | | |||||||||||| |||||||||||||| |||||| ||||||    
T  9992905 gcacactcgttgccttgacgaagggtatgatgaaaattaacaatccaatctcgacgatgcagttggacaatttgactaatcaaaggagcatgaggatgat 9993004  T
Q  304 gaggttcgacatccgacatga 324  Q
     || || ||||||||||||||    
T  9993005 aagattggacatccgacatga 9993025  T

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