View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4768_low_5 (Length: 367)
Name: NF4768_low_5
Description: NF4768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4768_low_5 |
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| [»] chr2 (9 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 18 - 367
Target Start/End: Original strand, 9018928 - 9019286
Alignment:
| Q |
18 |
gcacagatattaattaccgagaactagtgaagaaggaaaatat---gatgtatatatcttagttagaaa------ttataaagaaagaagaagaattaag |
108 |
Q |
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| T |
9018928 |
gcacagatattaattacagagaacaagggaagaaggaaaatataaagatacatatatcttagttagaaggagagcttaaaaagaaagaagaagaattgag |
9019027 |
T |
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| Q |
109 |
tgctatgaaaaagaatcacaagaataacaaaggattagttgcaactatacatatgaatttgacctcaagactcaagtggcagtgagggtgctgcacctcg |
208 |
Q |
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||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9019028 |
tgctatgaaaaagaatcacaagattaaaaaaggattagttgcaactatacatatgaatttgacctcaagactcaagtggcagtgagggtgctgcacctcg |
9019127 |
T |
|
| Q |
209 |
ttcttctacttaggcaactgtttattagatgttaaaataaaaaatgcacaagacacggtaaatgatagcatcacatttatgagtatattgtgtagtgtgc |
308 |
Q |
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| T |
9019128 |
ttcttctacttaggcaactgtttattagatgttaaaataaaaaatgcacaagacacggtaaatgatagcatcacatttatgagtatattgtgtagtgtgc |
9019227 |
T |
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| Q |
309 |
ctaagtcatgaaatgactaataatgttagaatccaaggatttcagtttttcaaaatgat |
367 |
Q |
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| T |
9019228 |
ctaagtcatgaaatgactaataatgttagaatccaaggatttcagtttttcaaaatgat |
9019286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 367
Target Start/End: Original strand, 9028330 - 9028688
Alignment:
| Q |
18 |
gcacagatattaattaccgagaactagtgaagaaggaaaatat---gatgtatatatcttagttagaaa------ttataaagaaagaagaagaattaag |
108 |
Q |
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| T |
9028330 |
gcacagatattaattacagagaacaagggaagaaggaaaatataaagatacatatatcttagttagaaggagagcttaaaaagaaagaagaagaattgag |
9028429 |
T |
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| Q |
109 |
tgctatgaaaaagaatcacaagaataacaaaggattagttgcaactatacatatgaatttgacctcaagactcaagtggcagtgagggtgctgcacctcg |
208 |
Q |
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| T |
9028430 |
tgctatgaaaaagaatcacaagattaaaaaaggattagttgcaactatacatatgaatttgacctcaagactcaagtggcagtgagggtgctgcacctcg |
9028529 |
T |
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| Q |
209 |
ttcttctacttaggcaactgtttattagatgttaaaataaaaaatgcacaagacacggtaaatgatagcatcacatttatgagtatattgtgtagtgtgc |
308 |
Q |
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| T |
9028530 |
ttcttctacttaggcaactgtttattagatgttaaaataaaaaatgcacaagacacggtaaatgatagcatcacatttatgagtatattgtgtagtgtgc |
9028629 |
T |
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| Q |
309 |
ctaagtcatgaaatgactaataatgttagaatccaaggatttcagtttttcaaaatgat |
367 |
Q |
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| T |
9028630 |
ctaagtcatgaaatgactaataatgttagaatcgaaggatttcagtttttcaaaatgat |
9028688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 8993648 - 8993869
Alignment:
| Q |
18 |
gcacagatattaattaccgagaactagtgaagaaggaaaatatgatgt---atatatcttagttagaaa------ttataaagaaagaagaagaattaag |
108 |
Q |
| |
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||||||||||||||||| ||||| || ||| ||||||||||||| | ||||||||||||||||| | | |||||||||||||||||| || |
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| T |
8993648 |
gcacagatattaattacaaagaacaagcgaataaggaaaatatgaagatacatatatcttagttagaaggagagctgaaaaagaaagaagaagaattgag |
8993747 |
T |
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| Q |
109 |
tgctatgaaaaagaatcacaagaataacaaaggattagttgcaactatacatatgaatttgacctcaagactcaagtggcagtgagggtgctgcacctcg |
208 |
Q |
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| ||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||| ||||||| |
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| T |
8993748 |
ttctatgaaaaagaatcacaatattaacaaaggattagttgcaactatgcatatgaatttgacctcaagactcaaatggaagtgagggtgctccacctcg |
8993847 |
T |
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| Q |
209 |
ttcttctacttaggcaactgtt |
230 |
Q |
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|||||||||||||||||||||| |
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| T |
8993848 |
ttcttctacttaggcaactgtt |
8993869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 260 - 367
Target Start/End: Original strand, 8993924 - 8994031
Alignment:
| Q |
260 |
gacacggtaaatgatagcatcacatttatgagtatattgtgtagtgtgcctaagtcatgaaatgactaataatgttagaatccaaggatttcagtttttc |
359 |
Q |
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|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
8993924 |
gacacgataaatgatagcgtcacatttatgagtatattgtgtagtgtgcctaagtcatgaaatgactaataatgttagaatcgaaggatttcagtttttc |
8994023 |
T |
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| Q |
360 |
aaaatgat |
367 |
Q |
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|||||||| |
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| T |
8994024 |
aaaatgat |
8994031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 19 - 232
Target Start/End: Original strand, 9014401 - 9014616
Alignment:
| Q |
19 |
cacagatattaattaccgagaactagtgaagaaggaaaatatga---tgtatatatcttagttagaaa------ttataaagaaagaagaagaattaagt |
109 |
Q |
| |
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|||||||||||||||| |||| |||||| | ||||||||||| || ||||||||||||||||| ||| |||||||||||||||||| ||| |
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| T |
9014401 |
cacagatattaattacaaagaataagtgaacagggaaaatatgaagatgcatatatcttagttagaaggagagcttaaaaagaaagaagaagaattgagt |
9014500 |
T |
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| Q |
110 |
gctatgaaaaagaatcacaagaataacaaaggattagttgcaactatacatatgaatttgacctcaagactcaagtggcagtgagggtgctgcacctcgt |
209 |
Q |
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|||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| | |
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| T |
9014501 |
gctatggaaaagaatcataagaataacaaaggattagttgcaactatagatatgaatttgac-------ctcaagtggcagtgagggtgctgcacctatt |
9014593 |
T |
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| Q |
210 |
tcttctacttaggcaactgttta |
232 |
Q |
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||||||||||| ||||||||||| |
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| T |
9014594 |
tcttctacttaagcaactgttta |
9014616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 19 - 131
Target Start/End: Original strand, 9017850 - 9017971
Alignment:
| Q |
19 |
cacagatattaattaccgagaactagtgaagaaggaaaatatga---tgtatatatcttagttagaaa------ttataaagaaagaagaagaattaagt |
109 |
Q |
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|||||| ||||||||| |||||| ||||||||||||||||||| || |||| |||||||||||| ||| ||||||||||||||||||||| |
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| T |
9017850 |
cacagagattaattacagagaacatgtgaagaaggaaaatatgaaaatgcatatgtcttagttagaaggagagcttaagaagaaagaagaagaattaagt |
9017949 |
T |
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| Q |
110 |
gctatgaaaaagaatcacaaga |
131 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
9017950 |
gctatgaaaaagaatcacaaga |
9017971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 135
Target Start/End: Original strand, 8987614 - 8987739
Alignment:
| Q |
19 |
cacagatattaattaccgagaactagtgaagaaggaaaatatgatgt---atatatcttagttagaaa------ttataaagaaagaagaagaattaagt |
109 |
Q |
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|||||||||||||||| ||||| |||||||||| ||||||||| | ||| ||||||||||||| ||| |||||||||||||||| ||||| |
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| T |
8987614 |
cacagatattaattacaaagaacaagtgaagaagaaaaatatgaagatacataaatcttagttagaaggagagcttagaaagaaagaagaagaaataagt |
8987713 |
T |
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| Q |
110 |
gctatgaaaaagaatcacaagaataa |
135 |
Q |
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|||| ||||||||||||||||||||| |
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| T |
8987714 |
gctacgaaaaagaatcacaagaataa |
8987739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 318 - 367
Target Start/End: Original strand, 9014673 - 9014721
Alignment:
| Q |
318 |
gaaatgactaataatgttagaatccaaggatttcagtttttcaaaatgat |
367 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
9014673 |
gaaatgactaataatgttagaatccaaggatttcag-ttttcaaaatgat |
9014721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 292
Target Start/End: Original strand, 9018094 - 9018126
Alignment:
| Q |
260 |
gacacggtaaatgatagcatcacatttatgagt |
292 |
Q |
| |
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|||||| |||||||||||||||||||||||||| |
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| T |
9018094 |
gacacgataaatgatagcatcacatttatgagt |
9018126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 142
Target Start/End: Complemental strand, 45555068 - 45555015
Alignment:
| Q |
89 |
aagaaagaagaagaattaagtgctatgaaaaagaatcacaagaataacaaagga |
142 |
Q |
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|||||||||| |||||||| ||||||| ||||||| | ||||||||||| |||| |
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| T |
45555068 |
aagaaagaagcagaattaaatgctatggaaaagaagctcaagaataacagagga |
45555015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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