View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4768_low_7 (Length: 339)

Name: NF4768_low_7
Description: NF4768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4768_low_7
NF4768_low_7
[»] chr4 (42 HSPs)
chr4 (1-213)||(50639724-50639939)
chr4 (212-331)||(30607133-30607252)
chr4 (213-331)||(34423160-34423278)
chr4 (211-331)||(48181821-48181941)
chr4 (211-331)||(25439066-25439185)
chr4 (212-331)||(21020031-21020150)
chr4 (212-331)||(40314214-40314332)
chr4 (212-331)||(40324290-40324408)
chr4 (214-331)||(23019001-23019117)
chr4 (215-335)||(468216-468335)
chr4 (211-335)||(33268190-33268311)
chr4 (215-306)||(21021193-21021284)
chr4 (213-335)||(21075156-21075276)
chr4 (212-306)||(34422050-34422144)
chr4 (213-306)||(30606024-30606117)
chr4 (212-308)||(48183148-48183243)
chr4 (213-306)||(25437929-25438022)
chr4 (265-335)||(46080479-46080549)
chr4 (213-331)||(48508288-48508405)
chr4 (233-330)||(10671445-10671540)
chr4 (233-330)||(10885085-10885180)
chr4 (214-290)||(4499769-4499845)
chr4 (211-290)||(4493688-4493767)
chr4 (211-313)||(46079138-46079239)
chr4 (213-295)||(40315359-40315440)
chr4 (213-295)||(40325434-40325515)
chr4 (211-292)||(21077104-21077185)
chr4 (217-330)||(46577024-46577134)
chr4 (234-334)||(2711993-2712091)
chr4 (276-331)||(21464047-21464102)
chr4 (218-306)||(23020115-23020203)
chr4 (271-335)||(42251425-42251489)
chr4 (217-331)||(2569061-2569167)
chr4 (214-313)||(53552252-53552352)
chr4 (213-306)||(10670328-10670416)
chr4 (213-306)||(10883967-10884055)
chr4 (212-301)||(1968198-1968284)
chr4 (213-313)||(33269473-33269572)
chr4 (216-313)||(2713268-2713366)
chr4 (215-276)||(13334823-13334884)
chr4 (214-259)||(42250138-42250182)
chr4 (234-302)||(15807676-15807743)
[»] chr3 (31 HSPs)
chr3 (214-331)||(24171728-24171845)
chr3 (212-331)||(28038784-28038900)
chr3 (213-335)||(26167162-26167281)
chr3 (215-306)||(24170599-24170690)
chr3 (213-322)||(5118752-5118859)
chr3 (215-335)||(23495680-23495797)
chr3 (211-323)||(38601334-38601445)
chr3 (212-306)||(28039947-28040038)
chr3 (213-329)||(39274552-39274667)
chr3 (211-306)||(18320918-18321013)
chr3 (213-321)||(5117363-5117469)
chr3 (214-313)||(23494350-23494448)
chr3 (211-297)||(7104640-7104726)
chr3 (276-335)||(29860682-29860741)
chr3 (213-263)||(21959887-21959937)
chr3 (217-322)||(27988345-27988449)
chr3 (211-305)||(49116800-49116894)
chr3 (214-329)||(39273664-39273772)
chr3 (214-289)||(39747155-39747227)
chr3 (213-329)||(50564798-50564910)
chr3 (213-301)||(5117788-5117874)
chr3 (214-308)||(7104546-7104636)
chr3 (212-301)||(27989285-27989374)
chr3 (212-293)||(26165875-26165954)
chr3 (232-289)||(49116408-49116465)
chr3 (212-276)||(5205114-5205178)
chr3 (213-276)||(5205350-5205413)
chr3 (211-313)||(15086219-15086322)
chr3 (213-313)||(46565259-46565353)
chr3 (234-303)||(25166717-25166785)
chr3 (211-276)||(51252280-51252345)
[»] chr8 (21 HSPs)
chr8 (213-331)||(38983221-38983339)
chr8 (213-331)||(39014318-39014436)
chr8 (213-327)||(44057140-44057254)
chr8 (211-330)||(20165804-20165922)
chr8 (212-331)||(9555842-9555958)
chr8 (213-331)||(26170335-26170453)
chr8 (213-331)||(43827103-43827220)
chr8 (213-331)||(37483326-37483444)
chr8 (214-335)||(43323790-43323908)
chr8 (213-306)||(38982109-38982202)
chr8 (213-306)||(39013206-39013299)
chr8 (213-335)||(3777125-3777246)
chr8 (212-306)||(26169196-26169290)
chr8 (214-306)||(4081836-4081929)
chr8 (214-306)||(4085985-4086078)
chr8 (213-306)||(20164623-20164715)
chr8 (215-336)||(33284378-33284497)
chr8 (213-306)||(44058212-44058304)
chr8 (212-313)||(43325013-43325114)
chr8 (214-306)||(9556968-9557059)
chr8 (211-329)||(14530240-14530357)
[»] chr1 (39 HSPs)
chr1 (214-331)||(49763642-49763759)
chr1 (213-331)||(16830994-16831112)
chr1 (213-331)||(20160360-20160478)
chr1 (213-331)||(46624603-46624721)
chr1 (214-325)||(27361384-27361495)
chr1 (211-335)||(50961353-50961475)
chr1 (214-330)||(21813778-21813894)
chr1 (214-335)||(27904215-27904335)
chr1 (211-335)||(48643276-48643399)
chr1 (214-306)||(27362115-27362207)
chr1 (211-306)||(46625757-46625852)
chr1 (214-306)||(16829854-16829946)
chr1 (212-306)||(20159220-20159312)
chr1 (212-329)||(6668249-6668366)
chr1 (212-330)||(22058695-22058814)
chr1 (214-331)||(7377355-7377471)
chr1 (213-313)||(27902952-27903053)
chr1 (213-306)||(49762584-49762676)
chr1 (276-335)||(36631029-36631088)
chr1 (213-330)||(38174064-38174177)
chr1 (213-297)||(7378414-7378496)
chr1 (282-335)||(10375400-10375453)
chr1 (232-329)||(9774981-9775075)
chr1 (212-306)||(17865642-17865736)
chr1 (211-297)||(22059767-22059850)
chr1 (232-313)||(50962633-50962715)
chr1 (213-260)||(17864836-17864883)
chr1 (211-274)||(21796112-21796175)
chr1 (215-329)||(32976786-32976897)
chr1 (212-295)||(36632236-36632315)
chr1 (211-329)||(6667322-6667441)
chr1 (212-313)||(10374132-10374234)
chr1 (212-301)||(22315143-22315232)
chr1 (212-312)||(45459210-45459310)
chr1 (213-260)||(38132677-38132723)
chr1 (213-242)||(1826464-1826493)
chr1 (211-260)||(32975570-32975619)
chr1 (233-310)||(49664341-49664417)
chr1 (215-306)||(48642062-48642150)
[»] chr7 (41 HSPs)
chr7 (213-331)||(27251060-27251178)
chr7 (212-331)||(39050582-39050700)
chr7 (211-330)||(44378644-44378762)
chr7 (211-330)||(44387511-44387629)
chr7 (221-335)||(11847037-11847152)
chr7 (213-335)||(37747361-37747481)
chr7 (214-331)||(7469185-7469301)
chr7 (213-331)||(44523467-44523582)
chr7 (214-331)||(28241758-28241874)
chr7 (214-335)||(32040953-32041072)
chr7 (212-328)||(15993715-15993829)
chr7 (211-306)||(27249965-27250060)
chr7 (217-335)||(35359226-35359345)
chr7 (213-306)||(44377461-44377554)
chr7 (213-306)||(44386328-44386421)
chr7 (212-325)||(48989277-48989387)
chr7 (211-306)||(28240664-28240758)
chr7 (214-306)||(7468064-7468155)
chr7 (216-306)||(39049940-39050031)
chr7 (212-313)||(15992327-15992428)
chr7 (239-330)||(11652421-11652511)
chr7 (211-290)||(34461123-34461202)
chr7 (211-280)||(29675637-29675706)
chr7 (271-331)||(23152057-23152117)
chr7 (239-335)||(36710380-36710476)
chr7 (212-313)||(39174262-39174361)
chr7 (215-289)||(34459195-34459268)
chr7 (214-295)||(11651340-11651419)
chr7 (271-327)||(21521468-21521524)
chr7 (214-301)||(30917388-30917472)
chr7 (213-290)||(26906460-26906537)
chr7 (239-330)||(30467487-30467576)
chr7 (211-313)||(32042928-32043028)
chr7 (211-297)||(21520441-21520524)
chr7 (216-313)||(35357455-35357551)
chr7 (213-275)||(20041132-20041194)
chr7 (212-254)||(30465092-30465134)
chr7 (282-335)||(6907198-6907251)
chr7 (237-301)||(8490816-8490877)
chr7 (232-297)||(37746075-37746139)
chr7 (214-274)||(28394999-28395057)
[»] chr6 (24 HSPs)
chr6 (214-331)||(28188112-28188228)
chr6 (211-335)||(2403671-2403793)
chr6 (213-325)||(34491150-34491265)
chr6 (213-331)||(28562774-28562891)
chr6 (211-306)||(28189216-28189311)
chr6 (213-335)||(19635791-19635914)
chr6 (212-335)||(17183318-17183438)
chr6 (213-315)||(24672558-24672661)
chr6 (235-336)||(29056792-29056889)
chr6 (212-294)||(19634500-19634581)
chr6 (213-289)||(20400140-20400216)
chr6 (233-331)||(3587639-3587735)
chr6 (213-296)||(17139766-17139846)
chr6 (212-331)||(18867192-18867308)
chr6 (211-297)||(18325538-18325622)
chr6 (214-295)||(2405024-2405104)
chr6 (276-335)||(28744817-28744875)
chr6 (213-306)||(34492382-34492474)
chr6 (297-335)||(17141135-17141173)
chr6 (213-313)||(17184522-17184621)
chr6 (271-321)||(18586281-18586331)
chr6 (212-313)||(24234327-24234429)
chr6 (234-322)||(21069534-21069623)
chr6 (211-279)||(9305618-9305686)
[»] chr5 (24 HSPs)
chr5 (214-331)||(40728214-40728331)
chr5 (214-330)||(3370128-3370244)
chr5 (213-331)||(7122448-7122565)
chr5 (214-335)||(15839239-15839361)
chr5 (214-331)||(3859759-3859875)
chr5 (211-331)||(31795817-31795935)
chr5 (212-306)||(3371293-3371386)
chr5 (212-306)||(7121318-7121411)
chr5 (217-335)||(25642666-25642782)
chr5 (213-329)||(14212382-14212498)
chr5 (212-306)||(21789547-21789640)
chr5 (237-331)||(21796553-21796645)
chr5 (237-329)||(21716819-21716909)
chr5 (233-331)||(42536162-42536256)
chr5 (211-331)||(7006291-7006407)
chr5 (233-306)||(40721689-40721761)
chr5 (237-301)||(7216588-7216651)
chr5 (212-335)||(30668857-30668972)
chr5 (212-306)||(21715631-21715724)
chr5 (212-313)||(15616457-15616559)
chr5 (213-297)||(42537042-42537124)
chr5 (232-329)||(294312-294407)
chr5 (271-329)||(7216278-7216336)
chr5 (211-301)||(15399608-15399698)
[»] chr2 (14 HSPs)
chr2 (214-331)||(15249481-15249597)
chr2 (213-306)||(15248388-15248481)
chr2 (265-335)||(5203720-5203789)
chr2 (236-330)||(18748742-18748836)
chr2 (213-313)||(5202728-5202828)
chr2 (212-331)||(42744049-42744167)
chr2 (237-331)||(43235912-43236002)
chr2 (211-329)||(29099699-29099815)
chr2 (212-297)||(18695344-18695430)
chr2 (215-335)||(9891657-9891774)
chr2 (263-335)||(18860221-18860292)
chr2 (215-313)||(25979588-25979684)
chr2 (212-297)||(18859071-18859154)
chr2 (265-301)||(35791045-35791081)
[»] scaffold0012 (2 HSPs)
scaffold0012 (216-331)||(54449-54562)
scaffold0012 (214-295)||(53372-53452)
[»] scaffold0265 (1 HSPs)
scaffold0265 (214-330)||(18915-19031)
[»] scaffold0013 (2 HSPs)
scaffold0013 (214-335)||(99613-99733)
scaffold0013 (213-297)||(100883-100967)
[»] scaffold0087 (1 HSPs)
scaffold0087 (215-335)||(42090-42211)
[»] scaffold0862 (2 HSPs)
scaffold0862 (213-335)||(2087-2207)
scaffold0862 (211-295)||(681-764)
[»] scaffold0300 (1 HSPs)
scaffold0300 (213-315)||(15735-15838)
[»] scaffold0230 (2 HSPs)
scaffold0230 (211-297)||(18733-18817)
scaffold0230 (271-321)||(6211-6261)
[»] scaffold0141 (1 HSPs)
scaffold0141 (234-302)||(11110-11177)


Alignment Details
Target: chr4 (Bit Score: 124; Significance: 9e-64; HSPs: 42)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 50639724 - 50639939
Alignment:
Q  1 tcaacttaagaaaattaccttatttatacacataatgctgctttcatccatttaatttacggagtttttaaaggggaaagagcgagggannnnnnnnnnn 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||  |||||||| ||||||               
T  50639724 tcaacttaagaaaattaccttatttgtacacataatgctgctttcatccatttaatttagggagtttttaaattggaaagagtgagggatacttttttat 50639823  T
Q  101 nnnnnnn---gttgtgaaaagtgagggaattattttttgacaaaagtgagggaattgttatttacatccataattacttatacacacttccttttccaaa 197  Q
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50639824 tttattttttgttgtgaaaagtgagggaattattttttgacaaaagtgagggaattgttatttacatccataattacttatacacacttccttttccaaa 50639923  T
Q  198 atatcaatttgggaaa 213  Q
    ||||||| ||||||||    
T  50639924 atatcaaattgggaaa 50639939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 212 - 331
Target Start/End: Complemental strand, 30607252 - 30607133
Alignment:
Q  212 aagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattc 311  Q
    |||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  30607252 aagggttaatatgtctttacccccctgtaatttgggcgagttccggttttcccccctgtaaaaaaaaaagtttagattccaaccctgtaaaataagattc 30607153  T
Q  312 tttcattttagcccctgacc 331  Q
    ||| ||||||||||||||||    
T  30607152 tttgattttagcccctgacc 30607133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 213 - 331
Target Start/End: Complemental strand, 34423278 - 34423160
Alignment:
Q  213 agggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattct 312  Q
    ||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  34423278 agggttaatatgtctttacccccctgtaatttgggcgagttccggttttcccccctgtaaaaaaaaaagtttagattccaaccctgtaaaataagattct 34423179  T
Q  313 ttcattttagcccctgacc 331  Q
    || ||||||||||||||||    
T  34423178 ttgattttagcccctgacc 34423160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 211 - 331
Target Start/End: Original strand, 48181821 - 48181941
Alignment:
Q  211 aaagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagatt 310  Q
    ||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||| ||||| |||||||||||||||||||||||||||||||||||    
T  48181821 aaagggttaatatgtctttacccccctgtaatttgggcgagttccggttttcccccctataaaaaaaaaagtttagattccaaccctgtaaaataagatt 48181920  T
Q  311 ctttcattttagcccctgacc 331  Q
    |||| ||||||||||||||||    
T  48181921 ctttgattttagcccctgacc 48181941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 211 - 331
Target Start/End: Complemental strand, 25439185 - 25439066
Alignment:
Q  211 aaagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagatt 310  Q
    ||||||||||||||| ||||||||| |||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  25439185 aaagggttaatatgtctttacccccttgtaatttgggcgagttccggttttcccccctgtaaaa-aaaaagtttagattccaaccctgtaaaataagatt 25439087  T
Q  311 ctttcattttagcccctgacc 331  Q
    |||| ||||||||||||||||    
T  25439086 ctttgattttagcccctgacc 25439066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 212 - 331
Target Start/End: Original strand, 21020031 - 21020150
Alignment:
Q  212 aagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattc 311  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||  |||||||||||||||||||||    
T  21020031 aagggttaatatgtttttacccccctgtaattagggcgagttctggttttcccccctgtaaaaaaaaaagtttagatgacaaccctgtaaaataagattc 21020130  T
Q  312 tttcattttagcccctgacc 331  Q
    |||  |||||||||||||||    
T  21020131 tttggttttagcccctgacc 21020150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 212 - 331
Target Start/End: Original strand, 40314214 - 40314332
Alignment:
Q  212 aagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattc 311  Q
    |||||||||||||| |||||| || |||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  40314214 aagggttaatatgtctttacctcc-tgtaatttgggcgagttccggttttcccccctgtaaaaaaaaaagtttagattccaaccctgtaaaataagattc 40314312  T
Q  312 tttcattttagcccctgacc 331  Q
    ||| ||||||||||||||||    
T  40314313 tttgattttagcccctgacc 40314332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 212 - 331
Target Start/End: Original strand, 40324290 - 40324408
Alignment:
Q  212 aagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattc 311  Q
    |||||||||||||| |||||| || |||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  40324290 aagggttaatatgtctttacctcc-tgtaatttgggcgagttccggttttcccccctgtaaaaaaaaaagtttagattccaaccctgtaaaataagattc 40324388  T
Q  312 tttcattttagcccctgacc 331  Q
    ||| ||||||||||||||||    
T  40324389 tttgattttagcccctgacc 40324408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 214 - 331
Target Start/End: Original strand, 23019001 - 23019117
Alignment:
Q  214 gggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattctt 313  Q
    ||||||||||||||||| |||| |||||||||||||||||  | |||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  23019001 gggttaatatgtttttatcccc-tgtaatttgggcgagtttcgattttcccccctgtaaaaaaaaaagtttagattccaaccctgtaaaataagattatt 23019099  T
Q  314 tcattttagcccctgacc 331  Q
    | ||||||||||||||||    
T  23019100 tgattttagcccctgacc 23019117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 215 - 335
Target Start/End: Original strand, 468216 - 468335
Alignment:
Q  215 ggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattcttt 314  Q
    |||||||| || |||||||||||||||||| ||||||||| ||||| || |||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  468216 ggttaataggtatttacccccctgtaatttaggcgagttccggtttacccccctgtaaaa-aaaaagtttagattccaaccctgaaaaataagattcttt 468314  T
Q  315 cattttagcccctgacctatg 335  Q
     ||||||||||||||| ||||    
T  468315 gattttagcccctgacttatg 468335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 211 - 335
Target Start/End: Original strand, 33268190 - 33268311
Alignment:
Q  211 aaagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagatt 310  Q
    ||||| ||||||||| ||||||| ||| |||||| ||||||||  ||||| ||  ||||||||| |||||||||||||||||||||||||||||||||||    
T  33268190 aaaggtttaatatgtatttaccctcctataatttaggcgagtttcggtttacc--cctgtaaaa-aaaaagtttagattccaaccctgtaaaataagatt 33268286  T
Q  311 ctttcattttagcccctgacctatg 335  Q
    |||| ||||||||||||||||||||    
T  33268287 ctttgattttagcccctgacctatg 33268311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 215 - 306
Target Start/End: Complemental strand, 21021284 - 21021193
Alignment:
Q  215 ggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataa 306  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||| |||||||||||||||||||||| ||| ||||    
T  21021284 ggttaatatgtttttacccccctgtaatttgggcgagttccggtttacccccctgtaaaaaaaaaagtttagattccaaccctataatataa 21021193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 213 - 335
Target Start/End: Original strand, 21075156 - 21075276
Alignment:
Q  213 agggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattct 312  Q
    ||||||||||||| ||||||||| |||||||| ||||||||| |||||  | |||||||||| |||||||||||||||||||| ||||||||||||||||    
T  21075156 agggttaatatgtatttaccccc-tgtaatttaggcgagttccggtttatc-ccctgtaaaaaaaaaagtttagattccaaccttgtaaaataagattct 21075253  T
Q  313 ttcattttagcccctgacctatg 335  Q
    || ||||||| | ||||||||||    
T  21075254 ttgattttagtcgctgacctatg 21075276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 212 - 306
Target Start/End: Original strand, 34422050 - 34422144
Alignment:
Q  212 aagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataa 306  Q
    |||||||||||||| |||||||||||||||||||||||||||  |||||||| |||||||||| |||||||||||||||||||||| ||| ||||    
T  34422050 aagggttaatatgtctttacccccctgtaatttgggcgagtttcggttttcccccctgtaaaaaaaaaagtttagattccaaccctataatataa 34422144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 213 - 306
Target Start/End: Original strand, 30606024 - 30606117
Alignment:
Q  213 agggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataa 306  Q
    ||||||||||||| |||||||||||||||||||||||||||  |||||||| |||||||||| |||||||||||||||||||||| ||| ||||    
T  30606024 agggttaatatgtctttacccccctgtaatttgggcgagtttcggttttcccccctgtaaaaaaaaaagtttagattccaaccctataatataa 30606117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 212 - 308
Target Start/End: Complemental strand, 48183243 - 48183148
Alignment:
Q  212 aagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataaga 308  Q
    |||||||||||||| ||||||||| |||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||| ||| ||||||    
T  48183243 aagggttaatatgtctttaccccc-tgtaatttgggcgagttccggttttcccccctgtaaaaaaaaaagtttagattccaaccctataatataaga 48183148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 213 - 306
Target Start/End: Original strand, 25437929 - 25438022
Alignment:
Q  213 agggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataa 306  Q
    ||||||||||||| |||||||||||||||||||| ||||||| |||||| | |||||||||| |||||||||||||||||||||| ||| ||||    
T  25437929 agggttaatatgtctttacccccctgtaatttggacgagttccggtttttccccctgtaaaaaaaaaagtttagattccaaccctataatataa 25438022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 265 - 335
Target Start/End: Complemental strand, 46080549 - 46080479
Alignment:
Q  265 ccctgtaaaataaaaagtttagattccaaccctgtaaaataagattctttcattttagcccctgacctatg 335  Q
    |||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  46080549 ccctgtaaaagaaaaagtttagattccaaccctctaaaataagattctttgattttagcccctgacctatg 46080479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 213 - 331
Target Start/End: Original strand, 48508288 - 48508405
Alignment:
Q  213 agggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattct 312  Q
    ||||||||||||| ||||||| ||| |||||| ||||||||| ||||| || || ||||||| |||||||||| |||  || ||||||||||||||||||    
T  48508288 agggttaatatgtctttaccctcctataattttggcgagttccggtttacc-ccatgtaaaaaaaaaagtttatattttaatcctgtaaaataagattct 48508386  T
Q  313 ttcattttagcccctgacc 331  Q
    || ||||||||||||||||    
T  48508387 ttgattttagcccctgacc 48508405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 233 - 330
Target Start/End: Complemental strand, 10671540 - 10671445
Alignment:
Q  233 cccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattctttcattttagcccctgac 330  Q
    |||| ||||||||||||||||  ||||| || |||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  10671540 cccccgtaatttgggcgagtttcggtttccc-ccctgtaaaa-aaaaagtttagatttcaaccctgtaaaataagattctttgattttagcccctgac 10671445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 233 - 330
Target Start/End: Complemental strand, 10885180 - 10885085
Alignment:
Q  233 cccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattctttcattttagcccctgac 330  Q
    |||| ||||||||||||||||  ||||| || |||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  10885180 cccccgtaatttgggcgagtttcggtttccc-ccctgtaaaa-aaaaagtttagatttcaaccctgtaaaataagattctttgattttagcccctgac 10885085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 214 - 290
Target Start/End: Complemental strand, 4499845 - 4499769
Alignment:
Q  214 gggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattc 290  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||| || ||||||||||||    
T  4499845 gggttaatatgtctttacccccctgtaatttgggcgagttccggttttcccccctgtaaaaaaataagtttagattc 4499769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 211 - 290
Target Start/End: Original strand, 4493688 - 4493767
Alignment:
Q  211 aaagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattc 290  Q
    ||||||||||||||| |||||||||||||||||||||||||||| |||||| | |||||||||| || ||||||||||||    
T  4493688 aaagggttaatatgtctttacccccctgtaatttgggcgagttccggtttttccccctgtaaaaaaataagtttagattc 4493767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 211 - 313
Target Start/End: Original strand, 46079138 - 46079239
Alignment:
Q  211 aaagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaat-aagat 309  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||| || ||||||||||  ||||||||||||||||||||| ||| || |||||    
T  46079138 aaagggttaatatgttttta-ccccctgtaatttgggcgagttccggtttacc-ccctgtaaaaataaaagtttagattccaaccctataatatgaagat 46079235  T
Q  310 tctt 313  Q
    ||||    
T  46079236 tctt 46079239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 213 - 295
Target Start/End: Complemental strand, 40315440 - 40315359
Alignment:
Q  213 agggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaacc 295  Q
    |||| |||||||| |||||||||||||||||||||||||||| |||||||| |||||||||| ||||| ||||||||||||||    
T  40315440 agggataatatgtctttacccccctgtaatttgggcgagttccggttttcccccctgtaaaa-aaaaaatttagattccaacc 40315359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 213 - 295
Target Start/End: Complemental strand, 40325515 - 40325434
Alignment:
Q  213 agggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaacc 295  Q
    |||| |||||||| |||||||||||||||||||||||||||| |||||||| |||||||||| ||||| ||||||||||||||    
T  40325515 agggataatatgtctttacccccctgtaatttgggcgagttccggttttcccccctgtaaaa-aaaaaatttagattccaacc 40325434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 211 - 292
Target Start/End: Complemental strand, 21077185 - 21077104
Alignment:
Q  211 aaagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattcca 292  Q
    ||||||||||||||| |||||||||||||||||||||||||||| ||||| |  ||||||||||  ||||||||||||||||    
T  21077185 aaagggttaatatgtatttacccccctgtaatttgggcgagttccggtttactcccctgtaaaaataaaagtttagattcca 21077104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 217 - 330
Target Start/End: Complemental strand, 46577134 - 46577024
Alignment:
Q  217 ttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattctttca 316  Q
    ||||||||| ||||||||| |||||||||| | ||||| |||||| | | |||||||| |||||||||||||||||||||||||| ||||||||||||      
T  46577134 ttaatatgtctttaccccc-tgtaatttggacaagttccggtttttc-ctctgtaaaa-aaaaagtttagattccaaccctgtaacataagattctttgg 46577038  T
Q  317 ttttagcccctgac 330  Q
    ||||||||||||||    
T  46577037 ttttagcccctgac 46577024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 234 - 334
Target Start/End: Original strand, 2711993 - 2712091
Alignment:
Q  234 ccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattctttcattttagcccctgaccta 333  Q
    ||||||||||| ||||||||| |||||    |||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  2711993 ccctgtaatttaggcgagttccggtttattcccctgtaaaa-aaaaagtttcgattccaaccctgtaaaataagattctttgattttag-ccctgaccta 2712090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 276 - 331
Target Start/End: Complemental strand, 21464102 - 21464047
Alignment:
Q  276 aaaaagtttagattccaaccctgtaaaataagattctttcattttagcccctgacc 331  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  21464102 aaaaagtttagattccaaccctgtaaaataagattctttgattttagcccctgacc 21464047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 218 - 306
Target Start/End: Complemental strand, 23020203 - 23020115
Alignment:
Q  218 taatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgt-aaaataaaaagtttagattccaaccctgtaaaataa 306  Q
    |||||||| ||||||||| |||||||||||||||||| |||||||| || ||| |||| |||||||||||||||||||||| ||| ||||    
T  23020203 taatatgtctttaccccc-tgtaatttgggcgagttccggttttcccccttgtaaaaaaaaaaagtttagattccaaccctataatataa 23020115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 271 - 335
Target Start/End: Complemental strand, 42251489 - 42251425
Alignment:
Q  271 aaaataaaaagtttagattccaaccctgtaaaataagattctttcattttagcccctgacctatg 335  Q
    |||| |||| ||||||||||||| | |||||||||||||||||||||||||||||||||| ||||    
T  42251489 aaaaaaaaaggtttagattccaatcttgtaaaataagattctttcattttagcccctgacttatg 42251425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 217 - 331
Target Start/End: Complemental strand, 2569167 - 2569061
Alignment:
Q  217 ttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattctttca 316  Q
    ||||||||| ||||||||  |||||||||||||||||| | ||| ||||| ||||||| |||||    ||||||||||||| ||||||| |||||||| |    
T  2569167 ttaatatgtctttacccc--tgtaatttgggcgagttccgatttacctcc-tgtaaaaaaaaaa----agattccaaccctataaaata-gattctttta 2569076  T
Q  317 ttttagcccctgacc 331  Q
    |||||||||||||||    
T  2569075 ttttagcccctgacc 2569061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 214 - 313
Target Start/End: Complemental strand, 53552352 - 53552252
Alignment:
Q  214 gggttaatatgtttttaccc-ccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaat-aagattc 311  Q
    |||||||||||| ||||||  ||||||||||||||||||||| ||||| || ||||||||||  ||||||||||||| ||||||| ||| || |||||||    
T  53552352 gggttaatatgtctttaccttccctgtaatttgggcgagttccggtttacc-ccctgtaaaaataaaagtttagatttcaaccctataatatgaagattc 53552254  T
Q  312 tt 313  Q
    ||    
T  53552253 tt 53552252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 306
Target Start/End: Original strand, 10670328 - 10670416
Alignment:
Q  213 agggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataa 306  Q
    ||||||||||||| |||||| || |||||||||||||||||| ||||| || ||||| ||||   |||||||||||||||||||| ||| ||||    
T  10670328 agggttaatatgtctttacctcc-tgtaatttgggcgagttccggtttacc-ccctgaaaaa---aaagtttagattccaaccctataatataa 10670416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 306
Target Start/End: Original strand, 10883967 - 10884055
Alignment:
Q  213 agggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataa 306  Q
    ||||||||||||| |||||| || |||||||||||||||||| ||||| || ||||| ||||   |||||||||||||||||||| ||| ||||    
T  10883967 agggttaatatgtctttacctcc-tgtaatttgggcgagttccggtttacc-ccctgaaaaa---aaagtttagattccaaccctataatataa 10884055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 301
Target Start/End: Complemental strand, 1968284 - 1968198
Alignment:
Q  212 aagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaa 301  Q
    |||||||||||||| ||||||| | |||||||||| ||||||| | ||| |  |||||||||| ||||||||||||||| |||| |||||    
T  1968284 aagggttaatatgtctttaccctcttgtaatttggacgagttccgatttac--ccctgtaaaa-aaaaagtttagattctaaccatgtaa 1968198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 213 - 313
Target Start/End: Complemental strand, 33269572 - 33269473
Alignment:
Q  213 agggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaat-aagattc 311  Q
    ||||||||||||| |||| |||| | |||||||| ||||||| ||||| || ||||||||||  ||||||||||||| ||||||| ||| || |||||||    
T  33269572 agggttaatatgtctttatcccc-tataatttggacgagttccggtttacc-ccctgtaaaaataaaagtttagatttcaaccctataatatgaagattc 33269475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 313
Target Start/End: Complemental strand, 2713366 - 2713268
Alignment:
Q  216 gttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaat-aagattctt 313  Q
    |||||||||| ||||| || |||||||||||||||||||  |||| |  |  |||||||  |||||||||||||| |||||| ||| || |||||||||    
T  2713366 gttaatatgtctttacacctctgtaatttgggcgagttccagtttacacctttgtaaaaataaaagtttagattctaaccctataatatgaagattctt 2713268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 276
Target Start/End: Original strand, 13334823 - 13334884
Alignment:
Q  215 ggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaata 276  Q
    |||||||| || |||||||||||||||| | ||  | |||||||||||| ||||||||||||    
T  13334823 ggttaataggtctttacccccctgtaatataggtcatttctggttttcccccctgtaaaata 13334884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 259
Target Start/End: Original strand, 42250138 - 42250182
Alignment:
Q  214 gggttaatatgtttttacccccctgtaatttgggcgagttctggtt 259  Q
    |||||||||||| |||||||| ||||||||||||||||||| ||||    
T  42250138 gggttaatatgtatttacccc-ctgtaatttgggcgagttccggtt 42250182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 302
Target Start/End: Original strand, 15807676 - 15807743
Alignment:
Q  234 ccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaa 302  Q
    ||||||||||||||||| || || ||||| ||||||||||| ||||| |||| ||| || |||||||||    
T  15807676 ccctgtaatttgggcgaattttgattttcgtccctgtaaaaaaaaaaattta-attacatccctgtaaa 15807743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 214 - 331
Target Start/End: Complemental strand, 24171845 - 24171728
Alignment:
Q  214 gggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattctt 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  24171845 gggttaatatgtttttacccccctgtaatttgggcgagttctggttttcccccctgtaaaaaaaaaagtttagattccaaccctgtaaaataagattctt 24171746  T
Q  314 tcattttagcccctgacc 331  Q
    |  |||||||||||||||    
T  24171745 tggttttagcccctgacc 24171728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 212 - 331
Target Start/End: Original strand, 28038784 - 28038900
Alignment:
Q  212 aagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattc 311  Q
    |||||||||||||| ||||||||  |||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  28038784 aagggttaatatgtctttacccc--tgtaatttgggcgagtttcggttttcctccctgtaaaa-aaaaagtttagattccaaccctgtaaaataagattc 28038880  T
Q  312 tttcattttagcccctgacc 331  Q
    ||| ||||||||||||||||    
T  28038881 tttgattttagcccctgacc 28038900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 213 - 335
Target Start/End: Complemental strand, 26167281 - 26167162
Alignment:
Q  213 agggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattct 312  Q
    ||||||||||||| ||||||||| |||||||| ||||| ||| ||||| || |||||||||| ||||||||||||||||||||||||||||||| |||||    
T  26167281 agggttaatatgtctttaccccc-tgtaatttaggcgaattccggtttacc-ccctgtaaaa-aaaaagtttagattccaaccctgtaaaataaaattct 26167185  T
Q  313 ttcattttagcccctgacctatg 335  Q
    || ||||||||||||||||||||    
T  26167184 ttgattttagcccctgacctatg 26167162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 215 - 306
Target Start/End: Original strand, 24170599 - 24170690
Alignment:
Q  215 ggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataa 306  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||| |||||||||||||||||||||| ||| ||||    
T  24170599 ggttaatatgtttttacccccctgtaatttgggcgagttccggtttacccccctgtaaaaaaaaaagtttagattccaaccctataatataa 24170690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 213 - 322
Target Start/End: Complemental strand, 5118859 - 5118752
Alignment:
Q  213 agggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattct 312  Q
    ||||||||||||||||||||| |||||||||| || |||||| ||||| || |||||||||| ||||||||||||||||||||||||||  |||||||||    
T  5118859 agggttaatatgtttttaccctcctgtaatttaggtgagttccggtttacc-ccctgtaaaa-aaaaagtttagattccaaccctgtaatttaagattct 5118762  T
Q  313 ttcattttag 322  Q
    ||||||||||    
T  5118761 ttcattttag 5118752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 215 - 335
Target Start/End: Complemental strand, 23495797 - 23495680
Alignment:
Q  215 ggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattcttt 314  Q
    ||||||||||| ||||||||| |||||||| ||||||||  ||||| || |||||||||| |||||| |||||||||||||||||||||||||||| |||    
T  23495797 ggttaatatgtatttaccccc-tgtaatttaggcgagtttcggtttacc-ccctgtaaaa-aaaaagattagattccaaccctgtaaaataagattattt 23495701  T
Q  315 cattttagcccctgacctatg 335  Q
     | ||||||||||||||||||    
T  23495700 gactttagcccctgacctatg 23495680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 211 - 323
Target Start/End: Original strand, 38601334 - 38601445
Alignment:
Q  211 aaagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagatt 310  Q
    ||||||||||||||| ||||| ||||| |||||| | ||||||| ||||| || ||||||||||  |||||||||||||||||||||||||||||||||     
T  38601334 aaagggttaatatgtctttacacccctataatttcgacgagttccggtttacc-ccctgtaaaaataaaagtttagattccaaccctgtaaaataagatc 38601432  T
Q  311 ctttcattttagc 323  Q
    |||| ||||||||    
T  38601433 ctttgattttagc 38601445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 212 - 306
Target Start/End: Complemental strand, 28040038 - 28039947
Alignment:
Q  212 aagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataa 306  Q
    |||||||||||||| ||||||||| |||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||| ||| ||||    
T  28040038 aagggttaatatgtctttaccccc-tgtaatttgggcgagttccggttttcc-ccctgtaaaa-aaaaagtttagattccaaccctataatataa 28039947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 213 - 329
Target Start/End: Complemental strand, 39274667 - 39274552
Alignment:
Q  213 agggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattct 312  Q
    ||||||||||||| ||||  ||| |||||||||||||||||| ||||| || | |||||||| |||||||||||||||||||| |||||  |||||||||    
T  39274667 agggttaatatgtctttagtccc-tgtaatttgggcgagttccggtttacccctctgtaaaaaaaaaagtttagattccaaccgtgtaatttaagattct 39274569  T
Q  313 ttcattttagcccctga 329  Q
    ||| || ||| ||||||    
T  39274568 ttcgttctagaccctga 39274552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 211 - 306
Target Start/End: Complemental strand, 18321013 - 18320918
Alignment:
Q  211 aaagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataa 306  Q
    ||||||||||||||| ||||| |||||| ||||||||||||||| |||||  | ||||||||||  ||||||||||||||||||||| ||| ||||    
T  18321013 aaagggttaatatgtctttactcccctgcaatttgggcgagttccggtttaaccccctgtaaaaataaaagtttagattccaaccctataatataa 18320918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 213 - 321
Target Start/End: Original strand, 5117363 - 5117469
Alignment:
Q  213 agggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattct 312  Q
    ||||||||||||| ||||||||| ||||||||||| ||||||  |||| || || ||||||| ||||||||||||||||||||||||||  ||| |||||    
T  5117363 agggttaatatgtctttaccccc-tgtaatttgggtgagttccagtttacccccttgtaaaa-aaaaagtttagattccaaccctgtaatttaaaattct 5117460  T
Q  313 ttcatttta 321  Q
    ||| |||||    
T  5117461 ttcgtttta 5117469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 214 - 313
Target Start/End: Original strand, 23494350 - 23494448
Alignment:
Q  214 gggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaat-aagattct 312  Q
    |||||||||||| ||||||||| |||||||||||||||||  ||||| ||||| |||||||  ||||||||||||||||||||| ||| || ||||||||    
T  23494350 gggttaatatgtctttaccccc-tgtaatttgggcgagtttcggtttacctcc-tgtaaaaataaaagtttagattccaaccctttaatatgaagattct 23494447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 211 - 297
Target Start/End: Complemental strand, 7104726 - 7104640
Alignment:
Q  211 aaagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgt-aaaataaaaagtttagattccaaccct 297  Q
    ||||||||||||||| ||||| ||| |||||||||| | ||||| |||||||| |||||| |||| ||||||||||||||||||||||    
T  7104726 aaagggttaatatgtctttacaccc-tgtaatttggacaagttccggttttcccccctgtaaaaaaaaaaagtttagattccaaccct 7104640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 276 - 335
Target Start/End: Complemental strand, 29860741 - 29860682
Alignment:
Q  276 aaaaagtttagattccaaccctgtaaaataagattctttcattttagcccctgacctatg 335  Q
    |||||||||||||||||| |||||||||||||||||||| |||||| || ||||||||||    
T  29860741 aaaaagtttagattccaatcctgtaaaataagattctttgattttaacctctgacctatg 29860682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 213 - 263
Target Start/End: Original strand, 21959887 - 21959937
Alignment:
Q  213 agggttaatatgtttttacccccctgtaatttgggcgagttctggttttcc 263  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  21959887 agggttaatatgtttttacccccctgtaatttgagcgagttccggttttcc 21959937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 217 - 322
Target Start/End: Original strand, 27988345 - 27988449
Alignment:
Q  217 ttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattctttca 316  Q
    ||||||||| ||||  ||| ||||||||||  |||||| | ||| || |||||||||| ||||| ||||||||||||||||||||  ||||||||||||     
T  27988345 ttaatatgtctttattcccatgtaatttggatgagttccgatttacc-ccctgtaaaaaaaaaaatttagattccaaccctgtaatttaagattctttcg 27988443  T
Q  317 ttttag 322  Q
    ||||||    
T  27988444 ttttag 27988449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 211 - 305
Target Start/End: Complemental strand, 49116894 - 49116800
Alignment:
Q  211 aaagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaag--tttagattccaaccctgtaaaata 305  Q
    ||||||||||||||| ||||||||| ||||||||| |||||||| ||||| || |||||||||| |||||   ||||||||||||| ||||||||||    
T  49116894 aaagggttaatatgtctttaccccc-tgtaatttgagcgagttccggtttacc-ccctgtaaaaaaaaaaaaatttagattccaactctgtaaaata 49116800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 329
Target Start/End: Original strand, 39273664 - 39273772
Alignment:
Q  214 gggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattctt 313  Q
    |||||||||||||||||  |||||||||||||||||| |||  |||| ||| ||||||||| ||  |||||||||| |||||||||      ||||||||    
T  39273664 gggttaatatgtttttagtcccctgtaatttgggcgaattccagtttacct-cctgtaaaaaaatcagtttagatttcaaccctgt------agattctt 39273756  T
Q  314 tcattttagcccctga 329  Q
    ||||||||| ||||||    
T  39273757 tcattttagaccctga 39273772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 289
Target Start/End: Complemental strand, 39747227 - 39747155
Alignment:
Q  214 gggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagatt 289  Q
    |||||||||| ||||||||||  ||||||||||||||||||||||||  |||||||||||| | ||||||||||||    
T  39747227 gggttaatatatttttacccc--tgtaatttgggcgagttctggtttatctccctgtaaaa-acaaagtttagatt 39747155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 213 - 329
Target Start/End: Complemental strand, 50564910 - 50564798
Alignment:
Q  213 agggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattct 312  Q
    ||||||||||||| ||||||||| ||| |||| ||||||||  ||||| ||||  |||||||  |||||||| ||||||||| || |||  |||||||||    
T  50564910 agggttaatatgtctttacccccttgtcatttaggcgagtttcggtttacctc--tgtaaaa--aaaagtttggattccaactctataatttaagattct 50564815  T
Q  313 ttcattttagcccctga 329  Q
    ||| |||||| ||||||    
T  50564814 ttcgttttagaccctga 50564798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 213 - 301
Target Start/End: Original strand, 5117788 - 5117874
Alignment:
Q  213 agggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaa 301  Q
    ||||||||||||| |||||||| ||||||||| ||||||||| || ||| ||| |||||||| || ||||||||||| ||||| |||||    
T  5117788 agggttaatatgtctttacccc-ctgtaatttaggcgagttccgg-tttactctctgtaaaaaaataagtttagatttcaaccttgtaa 5117874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 214 - 308
Target Start/End: Original strand, 7104546 - 7104636
Alignment:
Q  214 gggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataaga 308  Q
    |||||||||||| ||||||||  |||||||||||||||||| ||||  ||  ||||||||| ||| | |||||||| ||||| ||||||||||||    
T  7104546 gggttaatatgtctttacccc--tgtaatttgggcgagttccggttaccc--cctgtaaaaaaaataatttagatttcaaccttgtaaaataaga 7104636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 301
Target Start/End: Complemental strand, 27989374 - 27989285
Alignment:
Q  212 aagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgt-aaaataaaaagtttagattccaaccctgtaa 301  Q
    ||||||||||||||||||||| || ||||||||  |||||||||||| | || || ||| |||| |||||||||||||| ||||| |||||    
T  27989374 aagggttaatatgtttttacctccttgtaatttaagcgagttctggtctacc-ccatgtaaaaaaaaaaagtttagatttcaaccttgtaa 27989285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 212 - 293
Target Start/End: Original strand, 26165875 - 26165954
Alignment:
Q  212 aagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaa 293  Q
    |||||||||||||| |||| |||||| |||||||||||||||| | ||| ||| |||||||||  ||| |||||||||||||    
T  26165875 aagggttaatatgtcttta-ccccctataatttgggcgagttccgatttacct-cctgtaaaaataaatgtttagattccaa 26165954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 232 - 289
Target Start/End: Original strand, 49116408 - 49116465
Alignment:
Q  232 ccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagatt 289  Q
    ||||||||||||| ||||||||| ||||| |  |||||||||| ||||||||||||||    
T  49116408 ccccctgtaatttaggcgagttccggtttacacccctgtaaaaaaaaaagtttagatt 49116465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 276
Target Start/End: Original strand, 5205114 - 5205178
Alignment:
Q  212 aagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaata 276  Q
    ||||||||||| ||||||||||||||||||| | ||  | ||| |||||||| ||||||||||||    
T  5205114 aagggttaataggtttttacccccctgtaatataggtcatttccggttttcccccctgtaaaata 5205178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 213 - 276
Target Start/End: Complemental strand, 5205413 - 5205350
Alignment:
Q  213 agggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaata 276  Q
    |||||||||| ||||||||||||||||||| | ||  | ||| |||||||| ||||||||||||    
T  5205413 agggttaataggtttttacccccctgtaatataggtcatttccggttttcccccctgtaaaata 5205350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 211 - 313
Target Start/End: Original strand, 15086219 - 15086322
Alignment:
Q  211 aaagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaat-aagat 309  Q
    |||||||||||| || |||||||||||||||| | ||  | || ||||||| | |||||||||| ||||  ||||||||||  || |||||||| |||||    
T  15086219 aaagggttaataggtctttacccccctgtaatatagggcacttttggttttgccccctgtaaaaaaaaatatttagattccgtccttgtaaaatgaagat 15086318  T
Q  310 tctt 313  Q
    ||||    
T  15086319 tctt 15086322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 213 - 313
Target Start/End: Original strand, 46565259 - 46565353
Alignment:
Q  213 agggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattct 312  Q
    ||||||||||||||||||||||  | ||||||||| |||||| | ||| ||  ||||||||| ||||   |||||||||||||||||||  |||||||||    
T  46565259 agggttaatatgtttttacccct-tataatttgggtgagttccgatttacc--cctgtaaaaaaaaa---ttagattccaaccctgtaatttaagattct 46565352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 303
Target Start/End: Complemental strand, 25166785 - 25166717
Alignment:
Q  234 ccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaa 303  Q
    ||||||||||||||||| || || ||||| ||||||||||| ||||| |||| ||| || ||||||||||    
T  25166785 ccctgtaatttgggcgaattttgattttcgtccctgtaaaaaaaaaatttta-attacatccctgtaaaa 25166717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 276
Target Start/End: Complemental strand, 51252345 - 51252280
Alignment:
Q  211 aaagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaata 276  Q
    |||||||||||| || |||| ||||||||||| | ||  | |||||||||||| ||||||||||||    
T  51252345 aaagggttaataggtctttatccccctgtaatataggtcatttctggttttcccccctgtaaaata 51252280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 8e-49; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 213 - 331
Target Start/End: Complemental strand, 38983339 - 38983221
Alignment:
Q  213 agggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattct 312  Q
    ||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  38983339 agggttaatatgtctttacccccctgtaatttgggcgagttccggttttcccccctgtaaaaaaaaaagtttagattccaaccctgtaaaataagattct 38983240  T
Q  313 ttcattttagcccctgacc 331  Q
    || ||||||||||||||||    
T  38983239 ttgattttagcccctgacc 38983221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 213 - 331
Target Start/End: Complemental strand, 39014436 - 39014318
Alignment:
Q  213 agggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattct 312  Q
    ||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  39014436 agggttaatatgtctttacccccctgtaatttgggcgagttccggttttcccccctgtaaaaaaaaaagtttagattccaaccctgtaaaataagattct 39014337  T
Q  313 ttcattttagcccctgacc 331  Q
    || ||||||||||||||||    
T  39014336 ttgattttagcccctgacc 39014318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 213 - 327
Target Start/End: Original strand, 44057140 - 44057254
Alignment:
Q  213 agggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattct 312  Q
    ||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  44057140 agggttaatatgtatttacccccctgtaatttgggcgagttccggttttcccccctgtaaaaaaaaaagtttagattccaaccctgtaaaataagattct 44057239  T
Q  313 ttcattttagcccct 327  Q
    || ||||||||||||    
T  44057240 ttgattttagcccct 44057254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 211 - 330
Target Start/End: Complemental strand, 20165922 - 20165804
Alignment:
Q  211 aaagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagatt 310  Q
    ||||||||||||||| ||||||||||| |||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||| |||| ||||||||    
T  20165922 aaagggttaatatgtatttacccccctctaatttgggcgagttccggttttcc-ccctgtaaaaaaaaaagtttagattccaaccccgtaacataagatt 20165824  T
Q  311 ctttcattttagcccctgac 330  Q
    |||| |||||||||||||||    
T  20165823 ctttgattttagcccctgac 20165804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 212 - 331
Target Start/End: Original strand, 9555842 - 9555958
Alignment:
Q  212 aagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattc 311  Q
    |||||||||||||| ||||||||| |||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||    
T  9555842 aagggttaatatgtctttaccccc-tgtaatttgggcgagttccggttttcc-ccctgtaaaa-aaaaagtttagattccaaccctgtaaaataaaattc 9555938  T
Q  312 tttcattttagcccctgacc 331  Q
    ||| ||||||||||||||||    
T  9555939 tttgattttagcccctgacc 9555958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 213 - 331
Target Start/End: Complemental strand, 26170453 - 26170335
Alignment:
Q  213 agggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccc-tgtaaaataaaaagtttagattccaaccctgtaaaataagattc 311  Q
    ||||||||||||| ||||||||| |||||||| ||||||||| |||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  26170453 agggttaatatgtctttaccccc-tgtaatttaggcgagttccggttttccccccctgtaaaaaaaaaagtttagattccaaccctgtaaaataagattc 26170355  T
Q  312 tttcattttagcccctgacc 331  Q
    ||| |||| |||||||||||    
T  26170354 tttgatttaagcccctgacc 26170335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 213 - 331
Target Start/End: Original strand, 43827103 - 43827220
Alignment:
Q  213 agggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattct 312  Q
    ||||||||||||| |||| ||||||||||||||||| ||||| | |||  | |||||||||| |||||||||||||||||||||| ||||||||||||||    
T  43827103 agggttaatatgtctttatccccctgtaatttgggcaagttccgatttaaccccctgtaaaa-aaaaagtttagattccaaccctataaaataagattct 43827201  T
Q  313 ttcattttagcccctgacc 331  Q
    || ||||||||||||||||    
T  43827202 ttgattttagcccctgacc 43827220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 213 - 331
Target Start/End: Complemental strand, 37483444 - 37483326
Alignment:
Q  213 agggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaa--gtttagattccaaccctgtaaaataagatt 310  Q
    ||||||||||||| ||||||||| |||||||||| ||||||||||||| || |||||||||| |||||  ||||||||||||||||||||||||||||||    
T  37483444 agggttaatatgtctttaccccc-tgtaatttggacgagttctggtttacc-ccctgtaaaaaaaaaaaagtttagattccaaccctgtaaaataagatt 37483347  T
Q  311 ctttcattttagcccctgacc 331  Q
     ||| ||||||||||||||||    
T  37483346 atttgattttagcccctgacc 37483326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 214 - 335
Target Start/End: Original strand, 43323790 - 43323908
Alignment:
Q  214 gggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattctt 313  Q
    |||||||||||| ||||||||| |||||||| ||||||||| ||||| || |||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  43323790 gggttaatatgtatttaccccc-tgtaatttaggcgagttccggtttacc-ccctgtaaaaaaaaaagtttagattccaaccctgtaaaataagattatt 43323887  T
Q  314 tcattttagcccctgacctatg 335  Q
    | ||||||| ||||||||||||    
T  43323888 tgattttag-ccctgacctatg 43323908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 213 - 306
Target Start/End: Original strand, 38982109 - 38982202
Alignment:
Q  213 agggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataa 306  Q
    ||||||||||||| |||||||||||||||||||||||||||  |||||||| |||||||||| |||||||||||||||||||||| ||| ||||    
T  38982109 agggttaatatgtctttacccccctgtaatttgggcgagtttcggttttcccccctgtaaaaaaaaaagtttagattccaaccctataatataa 38982202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 213 - 306
Target Start/End: Original strand, 39013206 - 39013299
Alignment:
Q  213 agggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataa 306  Q
    ||||||||||||| |||||||||||||||||||||||||||  |||||||| |||||||||| |||||||||||||||||||||| ||| ||||    
T  39013206 agggttaatatgtctttacccccctgtaatttgggcgagtttcggttttcccccctgtaaaaaaaaaagtttagattccaaccctataatataa 39013299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 213 - 335
Target Start/End: Original strand, 3777125 - 3777246
Alignment:
Q  213 agggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctc-cctgtaaaataaaaagtttagattccaaccctgtaaaataagattc 311  Q
    ||||||||||||| ||||||||  |||||||| | ||||||| ||||| || | ||| ||||| ||||||||||||||||||||||||||| ||||||||    
T  3777125 agggttaatatgtatttacccc--tgtaatttagacgagttccggtttacccctcctataaaaaaaaaagtttagattccaaccctgtaaattaagattc 3777222  T
Q  312 tttcattttagcccctgacctatg 335  Q
    ||| ||||||||||||||||||||    
T  3777223 tttgattttagcccctgacctatg 3777246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 212 - 306
Target Start/End: Original strand, 26169196 - 26169290
Alignment:
Q  212 aagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataa 306  Q
    |||||||||||||| ||||  |||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||| ||| ||||    
T  26169196 aagggttaatatgtctttattcccctgtaatttgggcgagttccggttttcccccctgtaaaaaaaaaagtttagattccaaccctataatataa 26169290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 214 - 306
Target Start/End: Complemental strand, 4081929 - 4081836
Alignment:
Q  214 gggttaatatgtttttaccccc-ctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataa 306  Q
    |||||||||||| ||||||||| ||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||| ||| ||||    
T  4081929 gggttaatatgtctttaccccctctgtaatttgggcgagttccggttttcccccctgtaaaaaaaaaagtttagattccaaccctataatataa 4081836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 214 - 306
Target Start/End: Complemental strand, 4086078 - 4085985
Alignment:
Q  214 gggttaatatgtttttaccccc-ctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataa 306  Q
    |||||||||||| ||||||||| ||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||| ||| ||||    
T  4086078 gggttaatatgtctttaccccctctgtaatttgggcgagttccggttttcccccctgtaaaaaaaaaagtttagattccaaccctataatataa 4085985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 213 - 306
Target Start/End: Original strand, 20164623 - 20164715
Alignment:
Q  213 agggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataa 306  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||||| || |||||||||| |||||||||||||| ||||||| ||| ||||    
T  20164623 agggttaatatgtctttacccccctgtaatttgggcgagttccggtttacccccctgtaaaa-aaaaagtttagatttcaaccctataatataa 20164715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 215 - 336
Target Start/End: Original strand, 33284378 - 33284497
Alignment:
Q  215 ggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagt-ttagattccaaccctgtaaaataagattctt 313  Q
    ||||||||||| ||||||||  |||||||||||||||||  ||||| || | |||||||| |||||   ||||||||||||| ||| |||||||||||||    
T  33284378 ggttaatatgtctttacccc--tgtaatttgggcgagtttcggtttacc-ctctgtaaaaaaaaaaaaattagattccaaccatgtgaaataagattctt 33284474  T
Q  314 tcattttagcccctgacctatgc 336  Q
    | |||||||||||||||||||||    
T  33284475 tgattttagcccctgacctatgc 33284497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 213 - 306
Target Start/End: Complemental strand, 44058304 - 44058212
Alignment:
Q  213 agggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataa 306  Q
    ||||||||||||| |||||| || |||||||||||||||||| ||||| |  |||||||||| |||||||||||||||||||||| ||| ||||    
T  44058304 agggttaatatgtctttacctcc-tgtaatttgggcgagttccggtttcctcccctgtaaaaaaaaaagtttagattccaaccctataatataa 44058212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 212 - 313
Target Start/End: Complemental strand, 43325114 - 43325013
Alignment:
Q  212 aagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaat-aagatt 310  Q
    |||||||||||||| ||||||||| ||||||||| | |||||| ||||| ||  |||||||||  ||||||||||||||||||||| ||| || ||||||    
T  43325114 aagggttaatatgtctttaccccc-tgtaatttgagtgagttccggtttacccacctgtaaaaataaaagtttagattccaaccctataatatgaagatt 43325016  T
Q  311 ctt 313  Q
    |||    
T  43325015 ctt 43325013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 214 - 306
Target Start/End: Complemental strand, 9557059 - 9556968
Alignment:
Q  214 gggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgt-aaaataaaaagtttagattccaaccctgtaaaataa 306  Q
    |||||||||||| |||| |||  |||||||||| ||||||  ||||||||||||||| |||| ||||| |||||||||||||||| ||| ||||    
T  9557059 gggttaatatgtctttatccc--tgtaatttggacgagtttcggttttcctccctgtaaaaaaaaaaaatttagattccaaccctataatataa 9556968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 329
Target Start/End: Complemental strand, 14530357 - 14530240
Alignment:
Q  211 aaagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagatt 310  Q
    ||||||||||||| | ||||||  | |||||||||||||||||  ||||| |  | ||||||||  ||||||||| |||||||| || |||  ||| |||    
T  14530357 aaagggttaatatatctttaccgtc-tgtaatttgggcgagtttcggtttacacctctgtaaaaataaaagtttacattccaactctataatttaatatt 14530259  T
Q  311 ctttcattttagcccctga 329  Q
    ||||| |||||| ||||||    
T  14530258 ctttcgttttagaccctga 14530240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 3e-48; HSPs: 39)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 214 - 331
Target Start/End: Complemental strand, 49763759 - 49763642
Alignment:
Q  214 gggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattctt 313  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  49763759 gggttaatatgtctttacccccctgtaatttgggcgagttccggttttcccccctgtaaaaaaaaaagtttagattccaaccctgtaaaataagattctt 49763660  T
Q  314 tcattttagcccctgacc 331  Q
    | ||||||||||||||||    
T  49763659 tgattttagcccctgacc 49763642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 213 - 331
Target Start/End: Complemental strand, 16831112 - 16830994
Alignment:
Q  213 agggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattct 312  Q
    ||||||||||||| ||||||||| |||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  16831112 agggttaatatgtctttacccccttgtaatttgggcgagttccggttttcccccctgtaaaaaaaaaagtttagattccaaccctgtaaaataagattct 16831013  T
Q  313 ttcattttagcccctgacc 331  Q
    || ||||||||||||||||    
T  16831012 ttgattttagcccctgacc 16830994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 213 - 331
Target Start/End: Complemental strand, 20160478 - 20160360
Alignment:
Q  213 agggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattct 312  Q
    ||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||    
T  20160478 agggttaatatgtctttacccccctgtaatttgggcgagttccggttttcccccctgtaaaaaaaaaagtttagattccaaccttgtaaaataagattct 20160379  T
Q  313 ttcattttagcccctgacc 331  Q
    || ||||||||||||||||    
T  20160378 ttgattttagcccctgacc 20160360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 213 - 331
Target Start/End: Original strand, 46624603 - 46624721
Alignment:
Q  213 agggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattct 312  Q
    ||||||||||||| |||||||||||||||||||||||||||  |||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||    
T  46624603 agggttaatatgtctttacccccctgtaatttgggcgagtttcggttttcccccctataaaaaaaaaagtttagattccaaccctgtaaaataagattct 46624702  T
Q  313 ttcattttagcccctgacc 331  Q
    || ||||||||||||||||    
T  46624703 ttgattttagcccctgacc 46624721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 214 - 325
Target Start/End: Original strand, 27361384 - 27361495
Alignment:
Q  214 gggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattctt 313  Q
    |||||||||||| ||||| |||||||||||||||||||||| | |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  27361384 gggttaatatgtctttactcccctgtaatttgggcgagttccgattttcccccctgtaaaaaaaaaagtttagattccaaccctgtaaaataagattctt 27361483  T
Q  314 tcattttagccc 325  Q
    | ||||||||||    
T  27361484 tgattttagccc 27361495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 211 - 335
Target Start/End: Original strand, 50961353 - 50961475
Alignment:
Q  211 aaagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagatt 310  Q
    ||||||||||||||| ||||||||| |||||||| || |||||| ||||| || |||||||||| |||||||||||||||||||||||||||||||||||    
T  50961353 aaagggttaatatgtatttaccccc-tgtaatttaggggagttccggtttacc-ccctgtaaaaaaaaaagtttagattccaaccctgtaaaataagatt 50961450  T
Q  311 ctttcattttagcccctgacctatg 335  Q
    |||| ||||||||||||||||||||    
T  50961451 ctttaattttagcccctgacctatg 50961475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 214 - 330
Target Start/End: Complemental strand, 21813894 - 21813778
Alignment:
Q  214 gggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattctt 313  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||| ||| ||||| |||||||| | ||||||||| |||||||||||    
T  21813894 gggttaatatgtctttacccccctgtaatttgggcgagttccggttttcctccgtgtgaaaaaaaaaatttagatttctaccctgtaacataagattctt 21813795  T
Q  314 tcattttagcccctgac 330  Q
    | |||||||||||||||    
T  21813794 tgattttagcccctgac 21813778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 214 - 335
Target Start/End: Complemental strand, 27904335 - 27904215
Alignment:
Q  214 gggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattctt 313  Q
    |||||||||||| |||||||||||||||||| || |||||| | ||| || |||||||||| |||||||||| ||||||||||| |||||||||||||||    
T  27904335 gggttaatatgtatttacccccctgtaatttaggtgagttccgatttacc-ccctgtaaaaaaaaaagtttaaattccaaccctataaaataagattctt 27904237  T
Q  314 tcattttagcccctgacctatg 335  Q
    | ||||||||||||||||||||    
T  27904236 tgattttagcccctgacctatg 27904215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 211 - 335
Target Start/End: Complemental strand, 48643399 - 48643276
Alignment:
Q  211 aaagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaa-gtttagattccaaccctgtaaaataagat 309  Q
    ||||||||||||||| ||||||||| |||||||| ||||||||| ||||| || |||||||||| ||||| |||||||||||||||||||||||||||||    
T  48643399 aaagggttaatatgtatttaccccc-tgtaatttaggcgagttccggtttacc-ccctgtaaaaaaaaaaagtttagattccaaccctgtaaaataagat 48643302  T
Q  310 tctttcattttagcccctgacctatg 335  Q
    ||||| ||||||||||||||| ||||    
T  48643301 tctttgattttagcccctgacttatg 48643276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 214 - 306
Target Start/End: Complemental strand, 27362207 - 27362115
Alignment:
Q  214 gggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataa 306  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||| ||| ||||    
T  27362207 gggttaatatgtctttacccccctgtaatttgggcgagttccggttttcccccctgtaaaaaaaaaagtttagattccaaccctataatataa 27362115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 211 - 306
Target Start/End: Complemental strand, 46625852 - 46625757
Alignment:
Q  211 aaagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataa 306  Q
    ||||||||||||||| |||||||||||||||||||||||||||| | |||||| |||||||||| |||||||||||||||||||||| ||| ||||    
T  46625852 aaagggttaatatgtctttacccccctgtaatttgggcgagttccgattttcccccctgtaaaaaaaaaagtttagattccaaccctataatataa 46625757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 214 - 306
Target Start/End: Original strand, 16829854 - 16829946
Alignment:
Q  214 gggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataa 306  Q
    |||||||||||| |||||| ||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||| ||| ||||    
T  16829854 gggttaatatgtctttacctccctgtaatttgggcgagttccggttttcccccctgtaaaaaaaaaagtttagattccaaccctataatataa 16829946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 212 - 306
Target Start/End: Original strand, 20159220 - 20159312
Alignment:
Q  212 aagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataa 306  Q
    |||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||| ||| ||||    
T  20159220 aagggttaatatgtctttacccccctgtaatttgggcgagttccggttttcc-ccctgtaaaa-aaaaagtttagattccaaccctataatataa 20159312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 212 - 329
Target Start/End: Complemental strand, 6668366 - 6668249
Alignment:
Q  212 aagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattc 311  Q
    |||||||||||||| |||| || |||||||||||||||||||| ||||| || || ||||||| |||||  |||||||||||||||||||  ||||||||    
T  6668366 aagggttaatatgtctttagccacctgtaatttgggcgagttccggtttacccccttgtaaaaaaaaaaacttagattccaaccctgtaatttaagattc 6668267  T
Q  312 tttcattttagcccctga 329  Q
    |||| |||||| ||||||    
T  6668266 tttcgttttagaccctga 6668249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 212 - 330
Target Start/End: Original strand, 22058695 - 22058814
Alignment:
Q  212 aagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaag---tttagattccaaccctgtaaaataaga 308  Q
    |||||||||||||| ||||||||| |||||||||||||||||  ||||| || || ||||||| |||||    |||||||||||||||||||||||||||    
T  22058695 aagggttaatatgtctttaccccc-tgtaatttgggcgagtttcggtttacc-ccttgtaaaaaaaaaatatatttagattccaaccctgtaaaataaga 22058792  T
Q  309 ttctttcattttagcccctgac 330  Q
    |||||| |||||||||||||||    
T  22058793 ttctttgattttagcccctgac 22058814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 214 - 331
Target Start/End: Original strand, 7377355 - 7377471
Alignment:
Q  214 gggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattctt 313  Q
    |||||||||||| |||  |||||| ||||||  ||||||||  ||||  |||| ||||||| |||||||||||||||||||||| |||||||||||||||    
T  7377355 gggttaatatgtcttttaccccctttaatttaagcgagttccagtttatctcc-tgtaaaaaaaaaagtttagattccaaccctataaaataagattctt 7377453  T
Q  314 tcattttagcccctgacc 331  Q
    | ||||||||||||||||    
T  7377454 tgattttagcccctgacc 7377471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 213 - 313
Target Start/End: Original strand, 27902952 - 27903053
Alignment:
Q  213 agggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaat-aagattc 311  Q
    ||||||||||||| ||||||||||| |||||||||||||||| ||||| || ||||||||||  ||||||||||||||||||||| ||| || |||||||    
T  27902952 agggttaatatgtctttacccccctttaatttgggcgagttccggtttacccccctgtaaaaataaaagtttagattccaaccctataatatgaagattc 27903051  T
Q  312 tt 313  Q
    ||    
T  27903052 tt 27903053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 213 - 306
Target Start/End: Original strand, 49762584 - 49762676
Alignment:
Q  213 agggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataa 306  Q
    ||||||||||||| |||||||| ||||||||||||||||||| |||||||| | |||||||| |||||||||||||||||||||| ||| ||||    
T  49762584 agggttaatatgtctttacccc-ctgtaatttgggcgagttccggttttccccgctgtaaaaaaaaaagtttagattccaaccctataatataa 49762676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 276 - 335
Target Start/End: Original strand, 36631029 - 36631088
Alignment:
Q  276 aaaaagtttagattccaaccctgtaaaataagattctttcattttagcccctgacctatg 335  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  36631029 aaaaagtttagattccaaccctgtaaaataagattctttgattttagcccctgacctatg 36631088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 213 - 330
Target Start/End: Original strand, 38174064 - 38174177
Alignment:
Q  213 agggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattct 312  Q
    ||||||||||||| |||||| || ||||| |||||||||||| ||||| || ||||||||||  ||||||||||||| ||||||| ||||||||||||||    
T  38174064 agggttaatatgtctttacctcc-tgtaacttgggcgagttccggtttacc-ccctgtaaaa--aaaagtttagatttcaaccctataaaataagattct 38174159  T
Q  313 ttcattttagcccctgac 330  Q
    || |||||| ||||||||    
T  38174160 ttgattttaacccctgac 38174177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 213 - 297
Target Start/End: Complemental strand, 7378496 - 7378414
Alignment:
Q  213 agggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccct 297  Q
    ||||||||||||| ||||||||||| |||||||| ||||||||||||| |  |||||||||| |||||||||||||| |||||||    
T  7378496 agggttaatatgtatttacccccctctaatttggacgagttctggtttac--ccctgtaaaaaaaaaagtttagatttcaaccct 7378414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 282 - 335
Target Start/End: Complemental strand, 10375453 - 10375400
Alignment:
Q  282 tttagattccaaccctgtaaaataagattctttcattttagcccctgacctatg 335  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  10375453 tttagattccaaccctgtaaaataagattctttgattttagcccctgacctatg 10375400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 232 - 329
Target Start/End: Original strand, 9774981 - 9775075
Alignment:
Q  232 ccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattctttcattttagcccctga 329  Q
    |||||||||||||||| |||||| ||||| ||||| |||| ||  |||||||||||||||||||||||||  |||||||||||| |||||| ||||||    
T  9774981 ccccctgtaatttgggtgagttccggtttacctcc-tgtacaa--aaaagtttagattccaaccctgtaatttaagattctttcgttttagaccctga 9775075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 212 - 306
Target Start/End: Complemental strand, 17865736 - 17865642
Alignment:
Q  212 aagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaa-agtttagattccaaccctgtaaaataa 306  Q
    |||||||||||||| ||||| |||||||||||||||||||||| ||||| || |||||||||| ||||  |||||||||| |||| || |||||||    
T  17865736 aagggttaatatgtatttactcccctgtaatttgggcgagttccggtttacc-ccctgtaaaaaaaaattgtttagattctaaccttgaaaaataa 17865642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 211 - 297
Target Start/End: Complemental strand, 22059850 - 22059767
Alignment:
Q  211 aaagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccct 297  Q
    ||||||||||||||| ||||||||| ||||||||||| |||||| | ||| || |||||||||| ||||||||||||||||||||||    
T  22059850 aaagggttaatatgtctttaccccc-tgtaatttgggtgagttccgatttacc-ccctgtaaaa-aaaaagtttagattccaaccct 22059767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 232 - 313
Target Start/End: Complemental strand, 50962715 - 50962633
Alignment:
Q  232 ccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaat-aagattctt 313  Q
    |||||||||||||||||||| || ||||| || ||||||||||  ||||||||||||||||||||| ||| || |||||||||    
T  50962715 ccccctgtaatttgggcgagatccggtttacccccctgtaaaaataaaagtttagattccaaccctataatatgaagattctt 50962633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 213 - 260
Target Start/End: Original strand, 17864836 - 17864883
Alignment:
Q  213 agggttaatatgtttttacccccctgtaatttgggcgagttctggttt 260  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  17864836 agggttaatatgtctttacacccctgtaatttgggcgagttctggttt 17864883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 274
Target Start/End: Original strand, 21796112 - 21796175
Alignment:
Q  211 aaagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaa 274  Q
    ||||||||||||||| ||||||| |||||||||||||||| ||| ||||| || ||||||||||    
T  21796112 aaagggttaatatgtctttaccctcctgtaatttgggcgaattccggtttacccccctgtaaaa 21796175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 329
Target Start/End: Complemental strand, 32976897 - 32976786
Alignment:
Q  215 ggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattcttt 314  Q
    ||||||||||| |||||| ||  ||||||||||||||||| |||||   ||||| |||||  |||||||| |||| |||||  |||||||||||||||||    
T  32976897 ggttaatatgtctttaccacctcgtaatttgggcgagttccggtttaa-tccctataaaa--aaaagtttcgatttcaaccacgtaaaataagattcttt 32976801  T
Q  315 cattttagcccctga 329  Q
     |||||| |||||||    
T  32976800 gattttaacccctga 32976786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 295
Target Start/End: Complemental strand, 36632315 - 36632236
Alignment:
Q  212 aagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaacc 295  Q
    |||||||||||||| |||||||   |||||||||||||||||| || ||| |||||| |||||  |||||||||||||||||||    
T  36632315 aagggttaatatgtctttaccc---tgtaatttgggcgagttccgg-tttactccctataaaaataaaagtttagattccaacc 36632236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 211 - 329
Target Start/End: Original strand, 6667322 - 6667441
Alignment:
Q  211 aaagggttaa-tatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaat-aaga 308  Q
    |||||||||| ||||| |||| |||  |||||||  |||||||||  |||| || |||||||||| |||||||||||||||||||| |||||  | ||||    
T  6667322 aaagggttaaatatgtctttagccctatgtaattcaggcgagttccagtttacc-ccctgtaaaaaaaaaagtttagattccaaccttgtaatttgaaga 6667420  T
Q  309 ttctttcattttagcccctga 329  Q
    || ||||||||||| ||||||    
T  6667421 ttatttcattttagaccctga 6667441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 313
Target Start/End: Original strand, 10374132 - 10374234
Alignment:
Q  212 aagggttaatatgtttttacccccctgtaatttgggcgagttctggttt-tcctccctgtaaaataaaaagtttagattccaaccctgtaaaat-aagat 309  Q
    |||||||||||||| |||| |||| ||||||||||||||||||||||||  || ||||||||||   |||||||||||| ||| ||| ||| || |||||    
T  10374132 aagggttaatatgtctttaacccc-tgtaatttgggcgagttctggtttaccccccctgtaaaaatgaaagtttagatttcaatcctataatatgaagat 10374230  T
Q  310 tctt 313  Q
    ||||    
T  10374231 tctt 10374234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 301
Target Start/End: Original strand, 22315143 - 22315232
Alignment:
Q  212 aagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaa-agtttagattccaaccctgtaa 301  Q
    |||||||||||| | ||||| |||||||||| |  |||| |||||| ||| |||||||||||| ||||  |||||||||||||||||||||    
T  22315143 aagggttaatatatgtttactcccctgtaatattagcgatttctgg-tttactccctgtaaaaaaaaattgtttagattccaaccctgtaa 22315232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 212 - 312
Target Start/End: Original strand, 45459210 - 45459310
Alignment:
Q  212 aagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaat-aagatt 310  Q
    |||||||||||||| |||||||| |||||||| || ||||||| ||||| |  |||| ||||| |||  ||||||||||||||| || ||||| ||||||    
T  45459210 aagggttaatatgtctttacccc-ctgtaattgggacgagttccggtttacacccctttaaaaaaaattgtttagattccaaccttgaaaaatgaagatt 45459308  T
Q  311 ct 312  Q
    ||    
T  45459309 ct 45459310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 213 - 260
Target Start/End: Complemental strand, 38132723 - 38132677
Alignment:
Q  213 agggttaatatgtttttacccccctgtaatttgggcgagttctggttt 260  Q
    ||||||||||||| ||||||||| |||||||||||||||||| |||||    
T  38132723 agggttaatatgtctttaccccc-tgtaatttgggcgagttccggttt 38132677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 242
Target Start/End: Complemental strand, 1826493 - 1826464
Alignment:
Q  213 agggttaatatgtttttacccccctgtaat 242  Q
    ||||||||||||||||||||||||||||||    
T  1826493 agggttaatatgtttttacccccctgtaat 1826464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 32975570 - 32975619
Alignment:
Q  211 aaagggttaatatgtttttacccccctgtaatttgggcgagttctggttt 260  Q
    ||||||||||||||| ||||| ||| ||||||||| |||||||| |||||    
T  32975570 aaagggttaatatgtctttacacccttgtaatttgagcgagttccggttt 32975619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 310
Target Start/End: Complemental strand, 49664417 - 49664341
Alignment:
Q  233 cccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagatt 310  Q
    ||||||||||||||| ||||||  |||| || | || |||||  |||||||||||||||||||||||||  |||||||    
T  49664417 cccctgtaatttgggtgagttccagtttacc-ctctataaaaataaaagtttagattccaaccctgtaatttaagatt 49664341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 306
Target Start/End: Original strand, 48642062 - 48642150
Alignment:
Q  215 ggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataa 306  Q
    ||||||||||| ||||||||  |||||||||  ||||||  ||||| || |||| |||||  ||||||||||||||||||||| ||| ||||    
T  48642062 ggttaatatgtctttacccc--tgtaatttgatcgagtttcggtttacc-ccctataaaaataaaagtttagattccaaccctataatataa 48642150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 41)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 213 - 331
Target Start/End: Complemental strand, 27251178 - 27251060
Alignment:
Q  213 agggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattct 312  Q
    ||||||||||||| ||||||||||| |||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  27251178 agggttaatatgtctttacccccctataatttgggcgagttccggttttcccccctgtaaaaaaaaaagtttagattccaaccctgtaaaataagattct 27251079  T
Q  313 ttcattttagcccctgacc 331  Q
    || ||||||||||||||||    
T  27251078 ttgattttagcccctgacc 27251060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 212 - 331
Target Start/End: Complemental strand, 39050700 - 39050582
Alignment:
Q  212 aagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattc 311  Q
    |||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||| |||||||||||||||||    
T  39050700 aagggttaatatgtctttacccccctgtaatttgggcgagttccggttttcc-ccctgtaaaaaaaaaagtttagattccaatcctgtaaaataagattc 39050602  T
Q  312 tttcattttagcccctgacc 331  Q
    ||| ||||||||||||||||    
T  39050601 tttgattttagcccctgacc 39050582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 211 - 330
Target Start/End: Complemental strand, 44378762 - 44378644
Alignment:
Q  211 aaagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagatt 310  Q
    ||||||||||||||| ||||||||||| |||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||| |||| ||||||||    
T  44378762 aaagggttaatatgtatttacccccctctaatttgggcgagttccggttttcc-ccctgtaaaaaaaaaagtttagattccaaccccgtaacataagatt 44378664  T
Q  311 ctttcattttagcccctgac 330  Q
    |||| |||||||||||||||    
T  44378663 ctttgattttagcccctgac 44378644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 211 - 330
Target Start/End: Complemental strand, 44387629 - 44387511
Alignment:
Q  211 aaagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagatt 310  Q
    ||||||||||||||| ||||||||||| |||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||| |||| ||||||||    
T  44387629 aaagggttaatatgtatttacccccctctaatttgggcgagttccggttttcc-ccctgtaaaaaaaaaagtttagattccaaccccgtaacataagatt 44387531  T
Q  311 ctttcattttagcccctgac 330  Q
    |||| |||||||||||||||    
T  44387530 ctttgattttagcccctgac 44387511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 221 - 335
Target Start/End: Complemental strand, 11847152 - 11847037
Alignment:
Q  221 tatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaa-gtttagattccaaccctgtaaaataagattctttcattt 319  Q
    ||||| |||||||||||||||||| ||||||||| ||||| || |||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||    
T  11847152 tatgtatttacccccctgtaatttaggcgagttccggtttacccccctgtaaaaaaaaaaagtttagattccaaccctgtaaaataagattctttgattt 11847053  T
Q  320 tagcccctgacctatg 335  Q
    ||||||||||||||||    
T  11847052 tagcccctgacctatg 11847037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 213 - 335
Target Start/End: Complemental strand, 37747481 - 37747361
Alignment:
Q  213 agggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattct 312  Q
    ||||||||||||| ||||||||| |||||||| ||||||||| ||||| |||||| |||||| ||||||||||||||||||||||||||||||||||| |    
T  37747481 agggttaatatgtatttaccccc-tgtaatttaggcgagttccggtttacctcccagtaaaa-aaaaagtttagattccaaccctgtaaaataagattat 37747384  T
Q  313 ttcattttagcccctgacctatg 335  Q
    || ||||||||||||||||||||    
T  37747383 ttgattttagcccctgacctatg 37747361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 214 - 331
Target Start/End: Complemental strand, 7469301 - 7469185
Alignment:
Q  214 gggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattctt 313  Q
    |||||||||||||||||||||| |||||||||| |||||||  ||||| | |||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  7469301 gggttaatatgtttttaccccc-tgtaatttggacgagttccagtttttccccctataaaaaaaaaagtttagattccaaccctgtaaaataagattctt 7469203  T
Q  314 tcattttagcccctgacc 331  Q
    | ||||||||||||||||    
T  7469202 tgattttagcccctgacc 7469185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 213 - 331
Target Start/End: Complemental strand, 44523582 - 44523467
Alignment:
Q  213 agggttaatatgtttttacccccctgtaatttgggcgagttctggtttt-cctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattc 311  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||   ||||| ||||||||||||||||||||||||||||||||||||    
T  44523582 agggttaatatgtctttaccccc-tgtaatttgggcgagttctggtttttcctcc---taaaaaaaaaagtttagattccaaccctgtaaaataagattc 44523487  T
Q  312 tttcattttagcccctgacc 331  Q
    ||| ||||||||||||||||    
T  44523486 tttaattttagcccctgacc 44523467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 214 - 331
Target Start/End: Complemental strand, 28241874 - 28241758
Alignment:
Q  214 gggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattctt 313  Q
    |||||||||  | ||||||| |||||||||||||| | ||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  28241874 gggttaatacatctttaccctcctgtaatttgggcaaattccggttttcc-ccctgtaaaaaaaaaagtttagattccaaccctgtaaaataagattctt 28241776  T
Q  314 tcattttagcccctgacc 331  Q
    | ||||||||||||||||    
T  28241775 tgattttagcccctgacc 28241758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 214 - 335
Target Start/End: Original strand, 32040953 - 32041072
Alignment:
Q  214 gggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattctt 313  Q
    |||||||||||| ||||||||| |||||||| ||||||||| ||||| || |||||||||| ||||||||||||||| ||  ||||||||||||||||||    
T  32040953 gggttaatatgtatttaccccc-tgtaatttaggcgagttccggtttacc-ccctgtaaaaaaaaaagtttagattcaaattctgtaaaataagattctt 32041050  T
Q  314 tcattttagcccctgacctatg 335  Q
    | ||||||||||||||||||||    
T  32041051 tgattttagcccctgacctatg 32041072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 212 - 328
Target Start/End: Complemental strand, 15993829 - 15993715
Alignment:
Q  212 aagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattc 311  Q
    |||||||||||||| ||||||||| |||||||| ||||||||| ||||| || |||||||||| |||| |||||||||||||||||||||||||  ||||    
T  15993829 aagggttaatatgtatttaccccc-tgtaatttaggcgagttccggtttacc-ccctgtaaaaaaaaatgtttagattccaaccctgtaaaatacaattc 15993732  T
Q  312 tttcattttagcccctg 328  Q
    ||| |||||||||||||    
T  15993731 tttgattttagcccctg 15993715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 211 - 306
Target Start/End: Original strand, 27249965 - 27250060
Alignment:
Q  211 aaagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataa 306  Q
    |||||| |||||||| |||||||| ||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||| ||| ||||    
T  27249965 aaagggataatatgtctttaccccgctgtaatttgggcgagttccggttttcccccctgtaaaaaaaaaagtttagattccaaccctataatataa 27250060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 217 - 335
Target Start/End: Complemental strand, 35359345 - 35359226
Alignment:
Q  217 ttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaag--tttagattccaaccctgtaaaataagattcttt 314  Q
    ||||||||| |||||||| || |||||| ||||||||| |||||  | ||||||||||  |||||  |||||||||||||||||||||||||||||||||    
T  35359345 ttaatatgtatttacccctct-taatttaggcgagttccggtttatccccctgtaaaaacaaaagagtttagattccaaccctgtaaaataagattcttt 35359247  T
Q  315 cattttagcccctgacctatg 335  Q
     ||||||||||||||||||||    
T  35359246 gattttagcccctgacctatg 35359226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 213 - 306
Target Start/End: Original strand, 44377461 - 44377554
Alignment:
Q  213 agggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataa 306  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||||| || |||||||||| |||||||||||||| ||||||| ||| ||||    
T  44377461 agggttaatatgtctttacccccctgtaatttgggcgagttccggtttacccccctgtaaaaaaaaaagtttagatttcaaccctataatataa 44377554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 213 - 306
Target Start/End: Original strand, 44386328 - 44386421
Alignment:
Q  213 agggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataa 306  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||||| || |||||||||| |||||||||||||| ||||||| ||| ||||    
T  44386328 agggttaatatgtctttacccccctgtaatttgggcgagttccggtttacccccctgtaaaaaaaaaagtttagatttcaaccctataatataa 44386421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 212 - 325
Target Start/End: Original strand, 48989277 - 48989387
Alignment:
Q  212 aagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattc 311  Q
    |||||||||||||| ||||||||| |||||||||||||| ||  ||||| || |||||||||| |||||||||||||||||||||||||||||||||||     
T  48989277 aagggttaatatgtctttaccccc-tgtaatttgggcgactttcggtttacc-ccctgtaaaa-aaaaagtttagattccaaccctgtaaaataagattt 48989373  T
Q  312 tttcattttagccc 325  Q
    ||| ||||||||||    
T  48989374 tttgattttagccc 48989387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 211 - 306
Target Start/End: Original strand, 28240664 - 28240758
Alignment:
Q  211 aaagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataa 306  Q
    ||||||||||||||| |||||||| ||||||||||||||||||| |||||||| | |||||||| |||||||||||||||||||||| ||| ||||    
T  28240664 aaagggttaatatgtctttacccc-ctgtaatttgggcgagttccggttttcccctctgtaaaaaaaaaagtttagattccaaccctataatataa 28240758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 214 - 306
Target Start/End: Original strand, 7468064 - 7468155
Alignment:
Q  214 gggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataa 306  Q
    |||||||||||| |||||||| ||||||||||||||||||| |||||| | |||||||||| |||||||||||||||||||||| ||| ||||    
T  7468064 gggttaatatgtctttacccc-ctgtaatttgggcgagttccggtttttccccctgtaaaaaaaaaagtttagattccaaccctataatataa 7468155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 216 - 306
Target Start/End: Original strand, 39049940 - 39050031
Alignment:
Q  216 gttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgt-aaaataaaaagtttagattccaaccctgtaaaataa 306  Q
    |||||||||| |||||||||||||||||| ||||||||| |||||||| |||||| |||| |||||||||||||||||||||| ||| ||||    
T  39049940 gttaatatgtctttacccccctgtaattttggcgagttccggttttcccccctgtaaaaaaaaaaagtttagattccaaccctataatataa 39050031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 212 - 313
Target Start/End: Original strand, 15992327 - 15992428
Alignment:
Q  212 aagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaat-aagatt 310  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||||| || ||||||||||  ||||||||||||| ||||||| ||| || ||||||    
T  15992327 aagggttaatatgtctttacccccctgtaatttgggcgagttccggtttacc-ccctgtaaaaataaaagtttagatttcaaccctataatatgaagatt 15992425  T
Q  311 ctt 313  Q
    |||    
T  15992426 ctt 15992428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 239 - 330
Target Start/End: Complemental strand, 11652511 - 11652421
Alignment:
Q  239 taatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattctttcattttagcccctgac 330  Q
    |||||||||||||||| ||||| || || ||||||| |||||  |||||||||||||||||||||||||||| ||| |||||||||||||||    
T  11652511 taatttgggcgagttccggtttaccgcc-tgtaaaaaaaaaaaattagattccaaccctgtaaaataagattatttgattttagcccctgac 11652421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 211 - 290
Target Start/End: Complemental strand, 34461202 - 34461123
Alignment:
Q  211 aaagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattc 290  Q
    ||||||||||||||| ||||||  |||||||||||||||||||| |||||||| |||||||||| || ||||||||||||    
T  34461202 aaagggttaatatgtctttaccttcctgtaatttgggcgagttccggttttcccccctgtaaaaaaataagtttagattc 34461123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 211 - 280
Target Start/End: Complemental strand, 29675706 - 29675637
Alignment:
Q  211 aaagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaa 280  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||||||||  |||||||||| |||||    
T  29675706 aaagggttaatatgtttttaccctcctgtaatttgggcgaattctggttttctcccctgtaaaaaaaaaa 29675637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 271 - 331
Target Start/End: Complemental strand, 23152117 - 23152057
Alignment:
Q  271 aaaataaaaagtttagattccaaccctgtaaaataagattctttcattttagcccctgacc 331  Q
    |||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  23152117 aaaaaaaaaagtttagattacaaccctgtaaaataagattctttgattttagcccctgacc 23152057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 239 - 335
Target Start/End: Complemental strand, 36710476 - 36710380
Alignment:
Q  239 taatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattctttcattttagcccctgacctatg 335  Q
    |||||||||||||||| || || |  |||||||||| | |||||||||||| ||||||||| |||||||||| ||| |||||||||||||| |||||    
T  36710476 taatttgggcgagttccggattactcccctgtaaaaaataaagtttagatttcaaccctgtcaaataagattatttgattttagcccctgatctatg 36710380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 212 - 313
Target Start/End: Original strand, 39174262 - 39174361
Alignment:
Q  212 aagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaat-aagatt 310  Q
    |||||||||||||| ||||||| | |||||||||||||||||||||||| |  ||||||||||  ||||||||||||||||| ||| ||| || ||||||    
T  39174262 aagggttaatatgtctttacccac-tgtaatttgggcgagttctggtttac--ccctgtaaaaataaaagtttagattccaatcctataatatgaagatt 39174358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 215 - 289
Target Start/End: Original strand, 34459195 - 34459268
Alignment:
Q  215 ggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagatt 289  Q
    ||||||||||| |||||||||||||||||||||||||||  |||||| | |||||||||| || |||||||||||    
T  34459195 ggttaatatgtctttacccccctgtaatttgggcgagtttcggtttttc-ccctgtaaaaaaataagtttagatt 34459268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 214 - 295
Target Start/End: Original strand, 11651340 - 11651419
Alignment:
Q  214 gggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaacc 295  Q
    |||||||||||| |||||||| ||||||||||||||||||| ||||| || |||||||||| || ||||||||||| |||||    
T  11651340 gggttaatatgtctttacccc-ctgtaatttgggcgagttccggtttacc-ccctgtaaaaaaagaagtttagatttcaacc 11651419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 271 - 327
Target Start/End: Complemental strand, 21521524 - 21521468
Alignment:
Q  271 aaaataaaaagtttagattccaaccctgtaaaataagattctttcattttagcccct 327  Q
    |||| |||| ||||||||||||| |||||||||||||||||||| ||||||||||||    
T  21521524 aaaaaaaaatgtttagattccaatcctgtaaaataagattctttgattttagcccct 21521468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 301
Target Start/End: Complemental strand, 30917472 - 30917388
Alignment:
Q  214 gggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaa 301  Q
    |||||||||||||||| || ||||||||||||||||||||  | ||| || |||||||||| |||| |||||||||||||||||||||    
T  30917472 gggttaatatgttttt-cctccctgtaatttgggcgagtttcgatttacc-ccctgtaaaa-aaaaggtttagattccaaccctgtaa 30917388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 213 - 290
Target Start/End: Complemental strand, 26906537 - 26906460
Alignment:
Q  213 agggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgt-aaaataaaaagtttagattc 290  Q
    ||||||||||||| |||| ||||||||||||||||||||||| | |||||| | |||| |||| |||||||||||||||    
T  26906537 agggttaatatgtctttatccccctgtaatttgggcgagttccgattttcc-ctctgtaaaaaaaaaaagtttagattc 26906460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 239 - 330
Target Start/End: Complemental strand, 30467576 - 30467487
Alignment:
Q  239 taatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattctttcattttagcccctgac 330  Q
    |||||||| ||||||  ||||| || ||||||||||  ||||||||||||| ||||| | |||||||||||||||| ||||||  |||||||    
T  30467576 taatttggacgagtttcggtttaccaccctgtaaaa--aaaagtttagattacaaccttataaaataagattctttgattttaatccctgac 30467487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 211 - 313
Target Start/End: Complemental strand, 32043028 - 32042928
Alignment:
Q  211 aaagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaat-aagat 309  Q
    ||||||||||||||| ||||||||| |||||||||| ||||||  ||||| ||  |||||||||  ||||||||||||| ||||||| ||| || |||||    
T  32043028 aaagggttaatatgtctttaccccc-tgtaatttggacgagtttcggtttacc--cctgtaaaaataaaagtttagatttcaaccctataatatgaagat 32042932  T
Q  310 tctt 313  Q
    ||||    
T  32042931 tctt 32042928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 297
Target Start/End: Original strand, 21520441 - 21520524
Alignment:
Q  211 aaagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccct 297  Q
    |||||||||||||| ||||| ||||||||||||| ||||||||| || || || |||||||||| ||| |||||||| |||||||||    
T  21520441 aaagggttaatatgatttta-ccccctgtaatttaggcgagttccggcttacc-ccctgtaaaa-aaacagtttagagtccaaccct 21520524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 313
Target Start/End: Original strand, 35357455 - 35357551
Alignment:
Q  216 gttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaat-aagattctt 313  Q
    |||||||||| ||||||||| | |||||||| ||||||| ||||| || ||||||||||  |||||||||||||| |||||| ||| || |||||||||    
T  35357455 gttaatatgtctttaccccc-tataatttggacgagttccggtttacc-ccctgtaaaaataaaagtttagattctaaccctataatatgaagattctt 35357551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 275
Target Start/End: Complemental strand, 20041194 - 20041132
Alignment:
Q  213 agggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaat 275  Q
    |||||||||| ||||||||||||||||||| | ||  | ||| |||||||| |||||||||||    
T  20041194 agggttaataggtttttacccccctgtaatataggtcatttccggttttccaccctgtaaaat 20041132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 254
Target Start/End: Original strand, 30465092 - 30465134
Alignment:
Q  212 aagggttaatatgtttttacccccctgtaatttgggcgagttc 254  Q
    |||| ||||||||| ||||| ||||||||||||||||||||||    
T  30465092 aaggtttaatatgtctttacacccctgtaatttgggcgagttc 30465134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 335
Target Start/End: Complemental strand, 6907251 - 6907198
Alignment:
Q  282 tttagattccaaccctgtaaaataagattctttcattttagcccctgacctatg 335  Q
    |||| ||||||||||| |||||||||||||||| ||||||  || |||||||||    
T  6907251 tttaaattccaaccctataaaataagattctttgattttaatccatgacctatg 6907198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 301
Target Start/End: Complemental strand, 8490877 - 8490816
Alignment:
Q  237 tgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaa 301  Q
    |||||||||||||||||| ||||| | |||||  ||||  |||||||||||||||||||||||||    
T  8490877 tgtaatttgggcgagttccggtttac-tccctagaaaa--aaaagtttagattccaaccctgtaa 8490816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 297
Target Start/End: Original strand, 37746075 - 37746139
Alignment:
Q  232 ccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccct 297  Q
    ||||||||||||||| | ||||| |||||  | ||||||||||  |||||||||||||||||||||    
T  37746075 ccccctgtaatttggacaagttccggtttatc-ccctgtaaaaataaaagtttagattccaaccct 37746139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 274
Target Start/End: Complemental strand, 28395057 - 28394999
Alignment:
Q  214 gggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaa 274  Q
    ||||||||| || |||||||||| ||||||||||||||||| ||||| || ||||||||||    
T  28395057 gggttaatacgtatttacccccc-gtaatttgggcgagttccggtttacc-ccctgtaaaa 28394999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 94; Significance: 8e-46; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 214 - 331
Target Start/End: Original strand, 28188112 - 28188228
Alignment:
Q  214 gggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattctt 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| | ||    
T  28188112 gggttaatatgtttttacccccctgtaatttgggcgagttctggttttcccccctgtaaaa-aaaaagtttagattccaaccctgtaaaataagactatt 28188210  T
Q  314 tcattttagcccctgacc 331  Q
    || |||||||||||||||    
T  28188211 tcgttttagcccctgacc 28188228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 211 - 335
Target Start/End: Original strand, 2403671 - 2403793
Alignment:
Q  211 aaagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagatt 310  Q
    ||||||||||||||| |||||||||||||||||| ||||||||| ||||| || |||| |||||  ||||||||||||||||||||||||||||||||||    
T  2403671 aaagggttaatatgtatttacccccctgtaatttaggcgagttccggtttacccccctataaaa--aaaagtttagattccaaccctgtaaaataagatt 2403768  T
Q  311 ctttcattttagcccctgacctatg 335  Q
    |||| ||||||||| ||||||||||    
T  2403769 ctttgattttagccgctgacctatg 2403793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 213 - 325
Target Start/End: Original strand, 34491150 - 34491265
Alignment:
Q  213 agggttaatatgtttttacccccctgtaatttgggcgagttctggtttt-cctccctgtaaaataaaaa--gtttagattccaaccctgtaaaataagat 309  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||| |||||  |||||||||||||||||||||||||||||    
T  34491150 agggttaatatgtttttacccccctgtaatttgggcgagttttggttttccccccctgtaaaaaaaaaaaggtttagattccaaccctgtaaaataagat 34491249  T
Q  310 tctttcattttagccc 325  Q
    |||||  |||||||||    
T  34491250 tctttggttttagccc 34491265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 213 - 331
Target Start/End: Original strand, 28562774 - 28562891
Alignment:
Q  213 agggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaa-agtttagattccaaccctgtaaaataagattc 311  Q
    |||||||||||||||||| || |||||||||||||||||||||||||| ||  ||||||||| |||| ||||||||| ||||||||||||||||||||||    
T  28562774 agggttaatatgtttttatccacctgtaatttgggcgagttctggtttccc--cctgtaaaaaaaaaaagtttagataccaaccctgtaaaataagattc 28562871  T
Q  312 tttcattttagcccctgacc 331  Q
    |||  |||||||| ||||||    
T  28562872 tttggttttagcctctgacc 28562891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 211 - 306
Target Start/End: Complemental strand, 28189311 - 28189216
Alignment:
Q  211 aaagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataa 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||| || |||||||||| |||||||||||||||||||||| ||| ||||    
T  28189311 aaagggttaatatgtttttacccccctgtaatttgggcgagttccagtttacccccctgtaaaaaaaaaagtttagattccaaccctataatataa 28189216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 213 - 335
Target Start/End: Complemental strand, 19635914 - 19635791
Alignment:
Q  213 agggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaa--gtttagattccaaccctgtaaaataagatt 310  Q
    ||||||||||||| ||||||| | |||||||| ||||||||  ||||| ||||||||||||| |||||  ||||| ||||||||||||||||||||||||    
T  19635914 agggttaatatgtatttaccctc-tgtaatttaggcgagtttcggtttacctccctgtaaaagaaaaaaagtttaaattccaaccctgtaaaataagatt 19635816  T
Q  311 ctttcattttagcccctgacctatg 335  Q
    |||| |||||||||||||| |||||    
T  19635815 ctttgattttagcccctgatctatg 19635791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 212 - 335
Target Start/End: Original strand, 17183318 - 17183438
Alignment:
Q  212 aagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattc 311  Q
    |||| ||||||||| ||||||||| |||||||| ||||||||| | ||| || |||||||||| |||||||||||||||||||| |||||||||||||||    
T  17183318 aaggattaatatgtatttaccccc-tgtaatttaggcgagttccgatttacc-ccctgtaaaa-aaaaagtttagattccaaccttgtaaaataagattc 17183414  T
Q  312 tttcattttagcccctgacctatg 335  Q
    ||| ||||||||| ||||||||||    
T  17183415 tttgattttagccactgacctatg 17183438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 213 - 315
Target Start/End: Original strand, 24672558 - 24672661
Alignment:
Q  213 agggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaat-aagattc 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||   ||||||||||   |||||||| || |||||||    
T  24672558 agggttaatatgtttttacccccctgtaatttgggcgagttctggttttcccccctgtaaaaaaattcgtttagattctgtccctgtaatatgaagattc 24672657  T
Q  312 tttc 315  Q
    ||||    
T  24672658 tttc 24672661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 235 - 336
Target Start/End: Original strand, 29056792 - 29056889
Alignment:
Q  235 cctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattctttcattttagcccctgacctat 334  Q
    |||||||||||| ||||||||||||| ||  |||| ||||  ||||||||||||||||||| |||||||||||||||||| ||||||| |||||||| ||    
T  29056792 cctgtaatttggacgagttctggtttacc--cctgaaaaa--aaaagtttagattccaaccatgtaaaataagattctttgattttagtccctgacccat 29056887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 212 - 294
Target Start/End: Original strand, 19634500 - 19634581
Alignment:
Q  212 aagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaac 294  Q
    ||||||||||||||||||||||||||||||||| ||||||||  ||||| || ||||||||||  ||||||||||||||||||    
T  19634500 aagggttaatatgtttttacccccctgtaatttaggcgagtttcggtttacc-ccctgtaaaaataaaagtttagattccaac 19634581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 213 - 289
Target Start/End: Original strand, 20400140 - 20400216
Alignment:
Q  213 agggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagatt 289  Q
    ||||||||||||| ||||||||| |||||||||||||||||  ||||| || |||||||||| ||||||||||||||    
T  20400140 agggttaatatgtctttacccccttgtaatttgggcgagtttcggtttacccccctgtaaaaaaaaaagtttagatt 20400216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 233 - 331
Target Start/End: Complemental strand, 3587735 - 3587639
Alignment:
Q  233 cccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattctttcattttagcccctgacc 331  Q
    |||||||||||||||| ||||  |||||  | |||||||||| ||||| || ||||| |||||||||||||||||||||||| ||||||||||||||||    
T  3587735 cccctgtaatttgggcaagtttcggtttatc-ccctgtaaaaaaaaaaatt-agatttcaaccctgtaaaataagattctttaattttagcccctgacc 3587639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 213 - 296
Target Start/End: Original strand, 17139766 - 17139846
Alignment:
Q  213 agggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccc 296  Q
    |||||||| |||| ||||||||  |||||||||||||||||| ||||| || |||||||||| |||||||||||||||||||||    
T  17139766 agggttaacatgtctttacccc--tgtaatttgggcgagttccggtttacc-ccctgtaaaaaaaaaagtttagattccaaccc 17139846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 212 - 331
Target Start/End: Complemental strand, 18867308 - 18867192
Alignment:
Q  212 aagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattc 311  Q
    |||||||||||| | ||||||||| |||||||| | ||||||  ||||| || | || ||||| ||| | |||||||||||||||||||||||||||||     
T  18867308 aagggttaatatatctttaccccc-tgtaatttagacgagtttcggtttacc-cgctataaaaaaaata-tttagattccaaccctgtaaaataagatta 18867212  T
Q  312 tttcattttagcccctgacc 331  Q
    ||| ||||||||||||||||    
T  18867211 tttgattttagcccctgacc 18867192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 211 - 297
Target Start/End: Original strand, 18325538 - 18325622
Alignment:
Q  211 aaagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccct 297  Q
    ||||||||||||||| |||||||| ||||||||||||||||||  ||||| || || ||||||| ||||||||||||||| ||||||    
T  18325538 aaagggttaatatgtctttacccc-ctgtaatttgggcgagtttcggtttacc-ccatgtaaaaaaaaaagtttagattcgaaccct 18325622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 214 - 295
Target Start/End: Complemental strand, 2405104 - 2405024
Alignment:
Q  214 gggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaacc 295  Q
    |||||||||||| ||||||| | |||||||| ||||||||| ||||| || ||||||||||  |||||||||||||||||||    
T  2405104 gggttaatatgtctttaccctc-tgtaatttaggcgagttccggtttacccccctgtaaaaataaaagtttagattccaacc 2405024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 276 - 335
Target Start/End: Complemental strand, 28744875 - 28744817
Alignment:
Q  276 aaaaagtttagattccaaccctgtaaaataagattctttcattttagcccctgacctatg 335  Q
    ||||| ||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||    
T  28744875 aaaaaatttagattccaaccctgtaaaataagattatttgattttag-ccctgacctatg 28744817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 213 - 306
Target Start/End: Complemental strand, 34492474 - 34492382
Alignment:
Q  213 agggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgt-aaaataaaaagtttagattccaaccctgtaaaataa 306  Q
    ||||||||||||||||||| ||| |||||||||||||||||| | ||| || |||||| |||| |||||||||||||| ||||||| ||| ||||    
T  34492474 agggttaatatgtttttactccc-tgtaatttgggcgagttccgatttacc-ccctgtaaaaaaaaaaagtttagatttcaaccctataatataa 34492382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 297 - 335
Target Start/End: Complemental strand, 17141173 - 17141135
Alignment:
Q  297 tgtaaaataagattctttcattttagcccctgacctatg 335  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  17141173 tgtaaaataagattctttgattttagcccctgacctatg 17141135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 313
Target Start/End: Complemental strand, 17184621 - 17184522
Alignment:
Q  213 agggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaat-aagattc 311  Q
    |||||||||||||||||||||  | |||||||||||||| || ||||| |  ||| ||||||  ||||||||||||| ||||||| ||| || |||||||    
T  17184621 agggttaatatgtttttacccttcggtaatttgggcgaggtccggtttac--ccccgtaaaaataaaagtttagatttcaaccctataatatgaagattc 17184524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 321
Target Start/End: Complemental strand, 18586331 - 18586281
Alignment:
Q  271 aaaataaaaagtttagattccaaccctgtaaaataagattctttcatttta 321  Q
    |||| |||||||||||||| ||||| |||||||||||||||||| ||||||    
T  18586331 aaaaaaaaaagtttagatttcaaccatgtaaaataagattctttgatttta 18586281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 313
Target Start/End: Original strand, 24234327 - 24234429
Alignment:
Q  212 aagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaat-aagatt 310  Q
    ||||||||||| || |||||||||||||||| | ||  | || ||||||| | |||||||||| ||||| ||||||||||  || |||||||| ||||||    
T  24234327 aagggttaataggtctttacccccctgtaatataggacacttttggttttgccccctgtaaaaaaaaaaatttagattccgtccttgtaaaatgaagatt 24234426  T
Q  311 ctt 313  Q
    |||    
T  24234427 ctt 24234429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 322
Target Start/End: Original strand, 21069534 - 21069623
Alignment:
Q  234 ccctgtaatttgggcgagttctggttttcctccctgtaaaataaaa-agtttagattccaaccctgtaaaataagattctttcattttag 322  Q
    ||||||||| || |||| ||| ||||||  ||||||||||| |||| |||||||||||   |||||||| || |||||||| ||||||||    
T  21069534 ccctgtaatatgagcgaattccggttttagtccctgtaaaaaaaaaaagtttagattctgtccctgtaatatcagattcttccattttag 21069623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 279
Target Start/End: Original strand, 9305618 - 9305686
Alignment:
Q  211 aaagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaa 279  Q
    |||||||||||| | |||||||||||||  |||| || || || |||||| ||||||||||||| ||||    
T  9305618 aaagggttaataggcttttacccccctgctatttaggagacttttggtttacctccctgtaaaaaaaaa 9305686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 8e-46; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 214 - 331
Target Start/End: Complemental strand, 40728331 - 40728214
Alignment:
Q  214 gggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattctt 313  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||    
T  40728331 gggttaatatgtctttacccccctgtaatttgggcgagttccggttttcccccctgtaaaaaaaaaagtttagattccaaccctttaaaataagattctt 40728232  T
Q  314 tcattttagcccctgacc 331  Q
    | ||||||||||||||||    
T  40728231 tgattttagcccctgacc 40728214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 214 - 330
Target Start/End: Original strand, 3370128 - 3370244
Alignment:
Q  214 gggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattctt 313  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||| | |||||||||| |||||||||||||| |||||||||||||||||||||||    
T  3370128 gggttaatatgtctttacccccctgtaatttgggcgagttccggtttttccccctgtaaaaaaaaaagtttagatttcaaccctgtaaaataagattctt 3370227  T
Q  314 tcattttagcccctgac 330  Q
    | |||||||||||||||    
T  3370228 tgattttagcccctgac 3370244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 213 - 331
Target Start/End: Complemental strand, 7122565 - 7122448
Alignment:
Q  213 agggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattct 312  Q
    ||||||||||||| |||||| ||||||||||||||||||||| |||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||    
T  7122565 agggttaatatgtctttacctccctgtaatttgggcgagttccggttttcccccctataaaa-aaaaagtttagattccaaccctgtaaaataagattct 7122467  T
Q  313 ttcattttagcccctgacc 331  Q
    || ||||||||||||||||    
T  7122466 ttgattttagcccctgacc 7122448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 214 - 335
Target Start/End: Complemental strand, 15839361 - 15839239
Alignment:
Q  214 gggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaa-gtttagattccaaccctgtaaaataagattct 312  Q
    |||||||||||| ||||||||||| |||||| ||||||||| ||||| || |||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  15839361 gggttaatatgtatttacccccctttaatttaggcgagttccggtttacccccctgtaaaaaaaaaaagtttagattccaaccctgtaaaataagattct 15839262  T
Q  313 ttcattttagcccctgacctatg 335  Q
    || ||||||||||||||||||||    
T  15839261 ttgattttagcccctgacctatg 15839239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 214 - 331
Target Start/End: Original strand, 3859759 - 3859875
Alignment:
Q  214 gggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattctt 313  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||| || |||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  3859759 gggttaatatgtgtttacccccctgtaatttgggcgagttccggtttacc-ccctgtaaaaaaaaaagtttagattcgaaccctgtaaaataagattctt 3859857  T
Q  314 tcattttagcccctgacc 331  Q
    | |||||||||| |||||    
T  3859858 tgattttagcccatgacc 3859875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 211 - 331
Target Start/End: Original strand, 31795817 - 31795935
Alignment:
Q  211 aaagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaa-agtttagattccaaccctgtaaaataagat 309  Q
    ||||||||| ||||||||||||||  ||||||||||||||||| ||||||| |||  ||||||| |||| ||||||||||||||||||||||||||||||    
T  31795817 aaagggttagtatgtttttacccc--tgtaatttgggcgagttttggtttttctct-tgtaaaaaaaaaaagtttagattccaaccctgtaaaataagat 31795913  T
Q  310 tctttcattttagcccctgacc 331  Q
    |||||  |||||||||||||||    
T  31795914 tctttggttttagcccctgacc 31795935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 212 - 306
Target Start/End: Complemental strand, 3371386 - 3371293
Alignment:
Q  212 aagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataa 306  Q
    |||||||||||||| ||||||||| |||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||| ||| ||||    
T  3371386 aagggttaatatgtctttaccccc-tgtaatttgggcgagttccggttttcccccctgtaaaaaaaaaagtttagattccaaccctataatataa 3371293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 212 - 306
Target Start/End: Original strand, 7121318 - 7121411
Alignment:
Q  212 aagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataa 306  Q
    |||||||||||||| |||||||| ||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||| ||| ||||    
T  7121318 aagggttaatatgtctttacccc-ctgtaatttgggcgagttccggttttcccccctgtaaaaaaaaaagtttagattccaaccctataatataa 7121411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 217 - 335
Target Start/End: Complemental strand, 25642782 - 25642666
Alignment:
Q  217 ttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattctttca 316  Q
    ||||||||| |||||||||||||||||||||||||||| |||||  | |||| ||||| |||| |||||||||||||||| ||||||||||||| ||| |    
T  25642782 ttaatatgtctttacccccctgtaatttgggcgagttccggtttatc-ccctataaaa-aaaacgtttagattccaacccagtaaaataagattttttga 25642685  T
Q  317 ttttagcccctgacctatg 335  Q
    ||||||||||| |||||||    
T  25642684 ttttagcccctcacctatg 25642666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 213 - 329
Target Start/End: Original strand, 14212382 - 14212498
Alignment:
Q  213 agggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattct 312  Q
    ||||||||||||| |||| |||||||||||||||| |||||  |||||  | |||||||||| |||||||||||||||||||| |||||  |||||||||    
T  14212382 agggttaatatgtctttagccccctgtaatttgggtgagtttcggtttagccccctgtaaaaaaaaaagtttagattccaaccttgtaatttaagattct 14212481  T
Q  313 ttcattttagcccctga 329  Q
    ||| |||||| ||||||    
T  14212482 ttcgttttagaccctga 14212498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 212 - 306
Target Start/End: Original strand, 21789547 - 21789640
Alignment:
Q  212 aagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataa 306  Q
    |||||||||||||| |||||||| ||||||||| ||||||||| |||||| | |||||||||| |||||||||||||||||||||||||| ||||    
T  21789547 aagggttaatatgtctttacccc-ctgtaatttaggcgagttccggtttttccccctgtaaaaaaaaaagtttagattccaaccctgtaatataa 21789640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 237 - 331
Target Start/End: Complemental strand, 21796645 - 21796553
Alignment:
Q  237 tgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattctttcattttagcccctgacc 331  Q
    ||||||||||  |||||| |||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  21796645 tgtaatttggaagagttccggtttttc-ccctgtaaaa-aaaaagtttagattccaaccctgtaaaataagattctttgattttagcccctgacc 21796553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 237 - 329
Target Start/End: Complemental strand, 21716909 - 21716819
Alignment:
Q  237 tgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattctttcattttagcccctga 329  Q
    ||||||||||  |||||| |||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  21716909 tgtaatttggaagagttccggttttcc-ccctgaaaaa-aaaaagtttagattccaaccctgtaaaataagattctttgattttagcccctga 21716819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 233 - 331
Target Start/End: Original strand, 42536162 - 42536256
Alignment:
Q  233 cccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattctttcattttagcccctgacc 331  Q
    |||||||||||||| ||||||  |||||| |||| |||||||   ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  42536162 cccctgtaatttggacgagtttcggtttttctcc-tgtaaaa---aaagtttagattccaaccctgtaaaataagattctttgattttagcccctgacc 42536256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 211 - 331
Target Start/End: Complemental strand, 7006407 - 7006291
Alignment:
Q  211 aaagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagatt 310  Q
    ||||||||||||||| ||||||||  |||||||||||||||||||| ||| ||  ||||||||| ||| |  ||||||| ||||||||||||||||||||    
T  7006407 aaagggttaatatgtctttacccc--tgtaatttgggcgagttctgatttacc--cctgtaaaaaaaataaattagatttcaaccctgtaaaataagatt 7006312  T
Q  311 ctttcattttagcccctgacc 331  Q
     ||| |||||||||| |||||    
T  7006311 atttgattttagcccttgacc 7006291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 233 - 306
Target Start/End: Original strand, 40721689 - 40721761
Alignment:
Q  233 cccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataa 306  Q
    |||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||| ||| ||||    
T  40721689 cccctgtaatttgggcgagttccggttttcc-ccctgtaaaaaaaaaagtttagattccaaccctataatataa 40721761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 237 - 301
Target Start/End: Complemental strand, 7216651 - 7216588
Alignment:
Q  237 tgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaa 301  Q
    |||||||||||||||||| ||||| ||||| | ||||||||||||||||||||||||||||||||    
T  7216651 tgtaatttgggcgagttccggtttacctcc-tataaaataaaaagtttagattccaaccctgtaa 7216588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 212 - 335
Target Start/End: Complemental strand, 30668972 - 30668857
Alignment:
Q  212 aagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattc 311  Q
    |||||||||||||| |||| |||  |||||||| ||||||||| ||||| ||| || |||||| |||||||||     |||||| |||||||||||||||    
T  30668972 aagggttaatatgtatttatccc--tgtaatttaggcgagttccggtttaccttccagtaaaa-aaaaagttt-----ccaaccatgtaaaataagattc 30668881  T
Q  312 tttcattttagcccctgacctatg 335  Q
    ||| |||||||||||||| |||||    
T  30668880 tttgattttagcccctgatctatg 30668857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 212 - 306
Target Start/End: Original strand, 21715631 - 21715724
Alignment:
Q  212 aagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataa 306  Q
    |||||||| ||||| ||||||| | |||||||| || |||||| |||||| | |||||||||| ||||| |||||||||||||||||||| ||||    
T  21715631 aagggttactatgtctttaccctc-tgtaatttaggtgagttccggtttttccccctgtaaaaaaaaaaatttagattccaaccctgtaatataa 21715724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 313
Target Start/End: Complemental strand, 15616559 - 15616457
Alignment:
Q  212 aagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaat-aagatt 310  Q
    ||||||||||| || |||||||||||||||| | ||  | || ||||||| | |||||||||| ||||| ||||||||||  || |||||||| ||||||    
T  15616559 aagggttaataggtctttacccccctgtaatataggacacttttggttttgccccctgtaaaaaaaaaaatttagattccgtccttgtaaaatgaagatt 15616460  T
Q  311 ctt 313  Q
    |||    
T  15616459 ctt 15616457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 297
Target Start/End: Complemental strand, 42537124 - 42537042
Alignment:
Q  213 agggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaa-gtttagattccaaccct 297  Q
    ||||||||||||| |||||||   |||||||||||||||||| |||||||   ||||||||| ||||| |||||||||||||||||    
T  42537124 agggttaatatgtctttacccat-tgtaatttgggcgagttccggttttct--cctgtaaaaaaaaaaagtttagattccaaccct 42537042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 232 - 329
Target Start/End: Complemental strand, 294407 - 294312
Alignment:
Q  232 ccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaat-aagattctttcattttagcccctga 329  Q
    |||||||||||||| |||||||  ||||| || ||||||||||  ||||||||||||  |||||||||||  | ||||||||||| |||||| ||||||    
T  294407 ccccctgtaatttgtgcgagtttcggtttacc-ccctgtaaaa--aaaagtttagatctcaaccctgtaatttgaagattctttcgttttagaccctga 294312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 329
Target Start/End: Original strand, 7216278 - 7216336
Alignment:
Q  271 aaaataaaaagtttagattccaaccctgtaaaataagattctttcattttagcccctga 329  Q
    |||| |||||||||||||||||||| |||||  ||| |||||||| |||||| ||||||    
T  7216278 aaaaaaaaaagtttagattccaaccttgtaatttaatattctttcgttttagaccctga 7216336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 301
Target Start/End: Original strand, 15399608 - 15399698
Alignment:
Q  211 aaagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaa 301  Q
    ||||||||||||| | ||||| | |||||||| |  |||| ||||||||| ||||| ||||||| ||   |||||||| ||||||||||||    
T  15399608 aaagggttaatatatgtttactctcctgtaatattagcgatttctggtttacctccatgtaaaaaaatttgtttagatcccaaccctgtaa 15399698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 8e-46; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 214 - 331
Target Start/End: Complemental strand, 15249597 - 15249481
Alignment:
Q  214 gggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattctt 313  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  15249597 gggttaatatgtctttaccccc-tgtaatttgggcgagttctggttttcccccctgtaaaaaaaaaagtttagattccaaccctgtaaaataagattctt 15249499  T
Q  314 tcattttagcccctgacc 331  Q
    | ||||||||||||||||    
T  15249498 tgattttagcccctgacc 15249481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 213 - 306
Target Start/End: Original strand, 15248388 - 15248481
Alignment:
Q  213 agggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataa 306  Q
    |||| |||||||| |||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||| ||| ||||    
T  15248388 agggataatatgtctttacccccctgtaatttgggcgagttccggttttcccccctgtaaaaaaaaaagtttagattccaaccctataatataa 15248481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 265 - 335
Target Start/End: Complemental strand, 5203789 - 5203720
Alignment:
Q  265 ccctgtaaaataaaaagtttagattccaaccctgtaaaataagattctttcattttagcccctgacctatg 335  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  5203789 ccctgtaaaa-aaaaagtttagattccaaccctgtaaaataagattctttgattttagcctctgacctatg 5203720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 236 - 330
Target Start/End: Complemental strand, 18748836 - 18748742
Alignment:
Q  236 ctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattctttcattttagcccctgac 330  Q
    ||||||||||| ||||||| ||||| || || | |||||  |||||||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  18748836 ctgtaatttggacgagttccggtttacccccatctaaaaataaaagtttagattccaaccctgtaaaataagattctttgattttagaccctgac 18748742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 213 - 313
Target Start/End: Original strand, 5202728 - 5202828
Alignment:
Q  213 agggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaat-aagattc 311  Q
    ||||||||||||||||||||||| |||||||||||||||||  ||||| || ||||||||||  ||||||||||||||||||||| ||| || |||||||    
T  5202728 agggttaatatgtttttacccccttgtaatttgggcgagtttcggtttacc-ccctgtaaaaataaaagtttagattccaaccctataatatgaagattc 5202826  T
Q  312 tt 313  Q
    ||    
T  5202827 tt 5202828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 212 - 331
Target Start/End: Complemental strand, 42744167 - 42744049
Alignment:
Q  212 aagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattc 311  Q
    ||||||||||| || ||||||||  |||||||||||||||||  ||||| ||  ||||||||| ||| | |||||||||||||||||||||||||||||     
T  42744167 aagggttaatacgtctttacccca-tgtaatttgggcgagtttcggtttacccacctgtaaaaaaaataatttagattccaaccctgtaaaataagatta 42744069  T
Q  312 tttcattttagcccctgacc 331  Q
    ||| ||||||| || |||||    
T  42744068 tttaattttagtccatgacc 42744049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 237 - 331
Target Start/End: Original strand, 43235912 - 43236002
Alignment:
Q  237 tgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattctttcattttagcccctgacc 331  Q
    |||||||||| ||||||| ||||| ||  ||| |||||  ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  43235912 tgtaatttggacgagttccggtttacc--cctataaaa--aaaagtttagattacaaccctgtaaaataagattctttgattttagcccctgacc 43236002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 211 - 329
Target Start/End: Complemental strand, 29099815 - 29099699
Alignment:
Q  211 aaagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagatt 310  Q
    ||||||||||||||| ||||||  ||||||||||||| |||| | ||| | |   |||| |||| |||||||||||| | |||||||||||  |||||||    
T  29099815 aaagggttaatatgtctttaccttcctgtaatttgggtgagtaccggtatact--cctgcaaaaaaaaaagtttagaattcaaccctgtaatttaagatt 29099718  T
Q  311 ctttcattttagcccctga 329  Q
    |||||||||||| ||||||    
T  29099717 ctttcattttagaccctga 29099699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 212 - 297
Target Start/End: Original strand, 18695344 - 18695430
Alignment:
Q  212 aagggttaatatgtttttacccccc-tgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccct 297  Q
    |||||||||||||| |||||||||| | |||||||||||||||| ||||| || || |||||||  |||||| ||||||||||||||    
T  18695344 aagggttaatatgtctttaccccccctctaatttgggcgagttccggtttacccccttgtaaaaataaaagtatagattccaaccct 18695430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 215 - 335
Target Start/End: Original strand, 9891657 - 9891774
Alignment:
Q  215 ggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattcttt 314  Q
    ||||||||||| ||||||| | |||||||||  ||||||| |||||  |  ||||||||| ||||  |||||||| ||| |||||||||||||||| |||    
T  9891657 ggttaatatgtctttaccctc-tgtaatttgtccgagttccggtttaacctcctgtaaaaaaaaa--tttagatttcaatcctgtaaaataagattattt 9891753  T
Q  315 cattttagcccctgacctatg 335  Q
     |||||| |||||||||||||    
T  9891754 gattttaacccctgacctatg 9891774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 263 - 335
Target Start/End: Complemental strand, 18860292 - 18860221
Alignment:
Q  263 ctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattctttcattttagcccctgacctatg 335  Q
    |||||| ||||| |||| ||||||||||||| | |||||||||||||||||| |||||| |||||||||||||    
T  18860292 ctccctataaaa-aaaacgtttagattccaatcttgtaaaataagattctttgattttaacccctgacctatg 18860221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 313
Target Start/End: Original strand, 25979588 - 25979684
Alignment:
Q  215 ggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaat-aagattctt 313  Q
    ||||||||||| ||||||||| |||||||||||||| ||| ||||| || ||||||||||  ||||||||||| ||||||||| ||| || |||||||||    
T  25979588 ggttaatatgtctttaccccc-tgtaatttgggcga-ttccggtttacc-ccctgtaaaaataaaagtttagaatccaaccctataatatgaagattctt 25979684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 297
Target Start/End: Original strand, 18859071 - 18859154
Alignment:
Q  212 aagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccct 297  Q
    |||||||||||||| || ||||  ||||||||||||||||||  |||||  | |||||||||| ||||| |||||||| |||||||    
T  18859071 aagggttaatatgtcttaacccttctgtaatttgggcgagtttcggtttatc-ccctgtaaaa-aaaaattttagattacaaccct 18859154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 301
Target Start/End: Original strand, 35791045 - 35791081
Alignment:
Q  265 ccctgtaaaataaaaagtttagattccaaccctgtaa 301  Q
    ||||||||||||||  |||||||||||||||||||||    
T  35791045 ccctgtaaaataaattgtttagattccaaccctgtaa 35791081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 84; Significance: 7e-40; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 216 - 331
Target Start/End: Complemental strand, 54562 - 54449
Alignment:
Q  216 gttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattctttc 315  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||     
T  54562 gttaatatgtctttacccccctgtaatttgggcgagttccggttttcc-ccctgtaaaa-aaaaagtttagatttcaaccctgtaaaataagattctttg 54465  T
Q  316 attttagcccctgacc 331  Q
    ||||||||||||||||    
T  54464 attttagcccctgacc 54449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 214 - 295
Target Start/End: Original strand, 53372 - 53452
Alignment:
Q  214 gggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaacc 295  Q
    |||||||||||| |||||||| ||||||||||||||||||  |||||||| |||||||||| ||||||||||||||||||||    
T  53372 gggttaatatgtctttacccc-ctgtaatttgggcgagtttcggttttcccccctgtaaaaaaaaaagtttagattccaacc 53452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0265 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 214 - 330
Target Start/End: Original strand, 18915 - 19031
Alignment:
Q  214 gggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattctt 313  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||| ||| ||||| |||||||| | ||||||||| |||||||||||    
T  18915 gggttaatatgtctttacccccctgtaatttgggcgagttccggttttcctccgtgtgaaaaaaaaaatttagatttctaccctgtaacataagattctt 19014  T
Q  314 tcattttagcccctgac 330  Q
    | |||||||||||||||    
T  19015 tgattttagcccctgac 19031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 214 - 335
Target Start/End: Original strand, 99613 - 99733
Alignment:
Q  214 gggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattctt 313  Q
    |||||||||||| |||||||| ||||||||| |||||||||  |||| || |||| | ||| ||||||||||||||||||||||||||||||||||||||    
T  99613 gggttaatatgtatttacccc-ctgtaatttaggcgagttccagtttacccccctatgaaaaaaaaagtttagattccaaccctgtaaaataagattctt 99711  T
Q  314 tcattttagcccctgacctatg 335  Q
    | |||||||||| |||||||||    
T  99712 tgattttagcccttgacctatg 99733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 213 - 297
Target Start/End: Complemental strand, 100967 - 100883
Alignment:
Q  213 agggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccct 297  Q
    ||||||||||||| |||||||||||||||||| ||||||||| ||||| || ||||||||||  ||||||||||||| |||||||    
T  100967 agggttaatatgtctttacccccctgtaatttaggcgagttccggtttacccccctgtaaaaataaaagtttagatttcaaccct 100883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 215 - 335
Target Start/End: Original strand, 42090 - 42211
Alignment:
Q  215 ggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaa--agtttagattccaaccctgtaaaataagattct 312  Q
    ||||||||||| ||||||||| |||||||| ||||||||| ||||| || | |||||||| ||||  |||||||||||||||||||||||||||||||||    
T  42090 ggttaatatgtatttaccccc-tgtaatttaggcgagttccggtttacccctctgtaaaaaaaaaaaagtttagattccaaccctgtaaaataagattct 42188  T
Q  313 ttcattttagcccctgacctatg 335  Q
    || ||||||| ||||||||||||    
T  42189 ttgattttaggccctgacctatg 42211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0862 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: scaffold0862
Description:

Target: scaffold0862; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 213 - 335
Target Start/End: Complemental strand, 2207 - 2087
Alignment:
Q  213 agggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaataagattct 312  Q
    ||||||||||||| ||||||||| |||||||| |  |||||| ||||| || |||||| ||| |||||||||||||||||||||||||||||||||||||    
T  2207 agggttaatatgtatttaccccc-tgtaatttagaagagttccggtttgcc-ccctgttaaaaaaaaagtttagattccaaccctgtaaaataagattct 2110  T
Q  313 ttcattttagcccctgacctatg 335  Q
    || |||||||||| |||||||||    
T  2109 ttgattttagcccttgacctatg 2087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0862; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 211 - 295
Target Start/End: Original strand, 681 - 764
Alignment:
Q  211 aaagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaacc 295  Q
    ||||||||||||||| |||||| |  ||||||||||| |||||| ||||| || ||| ||||||  |||||||||||||||||||    
T  681 aaagggttaatatgtctttacctct-tgtaatttgggtgagttccggtttaccccccggtaaaaataaaagtttagattccaacc 764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 213 - 315
Target Start/End: Original strand, 15735 - 15838
Alignment:
Q  213 agggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaaat-aagattc 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||   ||||||||||   |||||||| || |||||||    
T  15735 agggttaatatgtttttacccccctgtaatttgggcgagttctggttttcccccctgtaaaaaaattcgtttagattctgtccctgtaatatgaagattc 15834  T
Q  312 tttc 315  Q
    ||||    
T  15835 tttc 15838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 211 - 297
Target Start/End: Complemental strand, 18817 - 18733
Alignment:
Q  211 aaagggttaatatgtttttacccccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccct 297  Q
    ||||||||||||||| ||||||||| |||||||||||||||||  ||||| || || ||||||| ||||||||||||||| ||||||    
T  18817 aaagggttaatatgtctttaccccc-tgtaatttgggcgagtttcggtttacc-ccatgtaaaaaaaaaagtttagattcgaaccct 18733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 321
Target Start/End: Original strand, 6211 - 6261
Alignment:
Q  271 aaaataaaaagtttagattccaaccctgtaaaataagattctttcatttta 321  Q
    |||| |||||||||||||| ||||| |||||||||||||||||| ||||||    
T  6211 aaaaaaaaaagtttagatttcaaccatgtaaaataagattctttgatttta 6261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 302
Target Start/End: Complemental strand, 11177 - 11110
Alignment:
Q  234 ccctgtaatttgggcgagttctggttttcctccctgtaaaataaaaagtttagattccaaccctgtaaa 302  Q
    ||||||||||||||||| || || ||||| ||||||||||| ||||| |||| ||| || |||||||||    
T  11177 ccctgtaatttgggcgaattttgattttcgtccctgtaaaaaaaaaaattta-attacatccctgtaaa 11110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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