View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4769-Insertion-1 (Length: 1070)
Name: NF4769-Insertion-1
Description: NF4769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4769-Insertion-1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 354; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 674 - 1062
Target Start/End: Original strand, 27771086 - 27771474
Alignment:
| Q |
674 |
ttccttgcctttttcctctatcaattttacctagtgaaaatcttccattagaaaacgatctcttcattgcaattggactcataacacaatgcaacactct |
773 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27771086 |
ttccttgcctttttcctctatcaattttaccaagtgaaaatcttccattagaaaacgatctcttcattgcaattggactcataacacaatgcaacactct |
27771185 |
T |
|
| Q |
774 |
tcttttgtaccttgatttactactttctccttgtgatatctttgatgaactaacatccattgaacatccttcttcacaagaatcatcttcatcttcattc |
873 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27771186 |
tcttttgtaccttgatttactactttctccttgtgatatctttgatgaactaacatccattgaacatccttcttcacaagaatcatcttcatcttcattc |
27771285 |
T |
|
| Q |
874 |
atattcaacacatcaccaattgaaaaaccattttgaaatgaatgatccatagacactgaccttccgatcgattcacaaacttcgtctctaatttcgatta |
973 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27771286 |
atattcaacacatcaccaattgaaaaaccattttgaaatgaatgatccatagacactgaccttccgatcgattcacaaacttcgtctctaatttcgatta |
27771385 |
T |
|
| Q |
974 |
ttctttctcttccttgcaaattacacaaatcactaaaagcgcgcaatgaaggcgcctttgaatcaacttctactatgatg-atcattgct |
1062 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||| ||||||||| || ||||||||| |
|
|
| T |
27771386 |
ttctttctcttccttgcaaattacacaaatcactaaaagcgcgcaatgatggcgccttcgactcaac-tctactatgttgcatcattgct |
27771474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 289; E-Value: 1e-161
Query Start/End: Original strand, 150 - 506
Target Start/End: Original strand, 27770549 - 27770908
Alignment:
| Q |
150 |
tctggtgtcatgtctacacttaatagtgtacaatattgagataggatgtcgaatattgttatgtccaattaataaatgtgaagttcttaattcaaaaatg |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
27770549 |
tctggtgtcatgtctacacttaatagtgtacaatattgagataggatgtcgaatattgt-atgtccaattaataaatgtgaagtttttaattcaaaaatg |
27770647 |
T |
|
| Q |
250 |
aattcttacagttaagatatgtatctgcattcacgcac----tgaatgcattggtgaatggtgggagttaaatttgataggacactttataaaaatgcaa |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
27770648 |
aattcttacagttaagatatgtatctgcattcacgcacgcactgaa-gcattggtgaatggtgagagttaaatttgataggacacttttcaaaaatgcaa |
27770746 |
T |
|
| Q |
346 |
atttaaactttcttgt-aaaatctaaattaccaaacttaatatctaaaccgcccaactatcaactatatcttgaataaatgaattcaagatatccttcct |
444 |
Q |
| |
|
|||| || |||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27770747 |
attttaattttctttttaaaatctaaattaccaaacttattatctaaaccgcccaactatcaactatatcttgaataaatgaattcaagatatccttcct |
27770846 |
T |
|
| Q |
445 |
gcaaagaatcttgatcccattaattcagggatccaaattgcataaataacatatacatattt |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27770847 |
gcaaagaatcttgatcccattaattcagggatccaaattgcataaataacatatacatattt |
27770908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 27770394 - 27770512
Alignment:
| Q |
20 |
ccctcactccctctctctcaca--cactcaaaggatagaggatctaattcctaatgtttttcatatgcaagttttgtcacatacaccatatatttattcg |
117 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27770394 |
ccctccctccctctctctcacacacactcaaaggatagaggatccaattcctaatgtttttcatatgcaagttttgtcacatacaccatatatttattcg |
27770493 |
T |
|
| Q |
118 |
attttcgagttttatattg |
136 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
27770494 |
attttcgagttttatattg |
27770512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 574 - 625
Target Start/End: Original strand, 27770987 - 27771038
Alignment:
| Q |
574 |
ttatgcaatcttcacacaaaaaattggtctatctctcttcttaatatatcat |
625 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
27770987 |
ttatgcaatcttcacacaaaaaattggtctgtctctcttcttaatatatcat |
27771038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 710 - 767
Target Start/End: Original strand, 12617286 - 12617343
Alignment:
| Q |
710 |
aaaatcttccattagaaaacgatctcttcattgcaattggactcataacacaatgcaa |
767 |
Q |
| |
|
||||||||||| | ||||| ||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
12617286 |
aaaatcttccacttgaaaatgatctcttcattgcaattggacttagcacacaatgcaa |
12617343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University