View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4769-Insertion-2 (Length: 1036)
Name: NF4769-Insertion-2
Description: NF4769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4769-Insertion-2 |
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Alignment Details
Target: chr3 (Bit Score: 613; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 8 - 704
Target Start/End: Original strand, 12048845 - 12049544
Alignment:
| Q |
8 |
caatcaacccatgaacatgaaaaagcggaagaacaatcaccgtcgaatccaactcactgagccggtaaaccgattcaatgtttcgaaccgatgaaactaa |
107 |
Q |
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| T |
12048845 |
caatcaacccatgaacatgaaaaagcggaagaacaatcaccgtcgaatccaactcactgagccggtaaaccgattcaatgtttcgaaccgatgaaactaa |
12048944 |
T |
|
| Q |
108 |
attgtgttgactcagtgggacccccttaggccgacttgtggtacctgatgtgtgaagaaaaagtgccacgtcggatggttcgttaattagttccgaaacc |
207 |
Q |
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| T |
12048945 |
attgtgttgactcagtgggacccccttaggccgacttgtggtacctgatgtgtgaagaaaaagtgccacgtcggatggttcgttaattagttccgaaacc |
12049044 |
T |
|
| Q |
208 |
gagttcgctgactcagtttggttcagcgaaattgaaagttttgtttcttcttcggttttattgaagcaaacggaaccgagtggaatgttgagctttgtag |
307 |
Q |
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| T |
12049045 |
gagttcgctgactcagtttggttcagcgaaattgaaagttttgtttcttcttcggttttattgaagcaaaccgaaccgagtggaatgttgagctttgtag |
12049144 |
T |
|
| Q |
308 |
ctgcggtttgagcagggttgttgccttctaatggtgttacgagaagctttgattctgagtcggagagataaaactcgaattcttctgatgtgtatgctgc |
407 |
Q |
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| T |
12049145 |
ctgcggtttgagcaggattgttgccttctaatggtgttaagagaagctttgattctgagtctgaaagataaaactcgaattcttctgatgtgtatgctgc |
12049244 |
T |
|
| Q |
408 |
gtttaatggtgttgccgtggctcggactcgaatcacggcaaggaacatgataacatactga---aacaataaaattataagattataccaaattttctgt |
504 |
Q |
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| T |
12049245 |
gtttaatggtgctgccgtggctcgaactcgaatcacggcaaggaacatgataacatactgaaacaacaacaaaattataagattataccaaattttttgt |
12049344 |
T |
|
| Q |
505 |
gattgtatcacaaatttctcgcaacacaattggattaaaattaatttaaaaactaacgtctaaaatgagtattattgttggagattgaatttctacaaca |
604 |
Q |
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| T |
12049345 |
gattgtatcacaaatttctcgcaacacaattcgatcaaaattaatttaaaaacgaacgtctaaaatgagtattattgttggagattgaatttctacaaca |
12049444 |
T |
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| Q |
605 |
ataatactatttata---taacattttgatataaaaacaaattattatttttacaattgatttatgctgtatctttgtgggtaatgtattttaaatgttg |
701 |
Q |
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| T |
12049445 |
ataatactatttatattttaacattttgatataaaaacaa---attatttttacaattgatttatgctgtatctttgtgggtaatgtattttaaatgttg |
12049541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 786 - 1018
Target Start/End: Original strand, 12049626 - 12049859
Alignment:
| Q |
786 |
cctcgatggtgttggggaaggtgagagcgacgacatcgttgggtttgattccagcggagatgagatgattagctgcagattcgactaattcatggagttg |
885 |
Q |
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| T |
12049626 |
cctcgatggtgttggggaaggtgagagcgacgacatcgttgggtttgattccagcggagatgagatgattagctgcagattcgactaattcatggagttg |
12049725 |
T |
|
| Q |
886 |
ggaatgggtgaggtcgaattttccggcgacagagatggcacgacgggaggggaatttttcagcgacggattggagtaatccggtgaagg-tgtagcggtt |
984 |
Q |
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| T |
12049726 |
ggaatgggtgaggtcgaattttccggcgacggagatggcacgacgggaggggaatttttcagcgacggattggagtaatccggtgagggttgtagcggtt |
12049825 |
T |
|
| Q |
985 |
cccattgctgttttgggatgaagaagatgtttgt |
1018 |
Q |
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||||||||||||| ||||||||||||||||||| |
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| T |
12049826 |
tccattgctgtttttggatgaagaagatgtttgt |
12049859 |
T |
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