View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4769-Insertion-3 (Length: 1010)
Name: NF4769-Insertion-3
Description: NF4769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4769-Insertion-3 |
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Alignment Details
Target: chr8 (Bit Score: 896; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 896; E-Value: 0
Query Start/End: Original strand, 8 - 1004
Target Start/End: Complemental strand, 36867680 - 36866681
Alignment:
| Q |
8 |
tccactctataaggaacagtcataattacacccaacaaatagtaacttaacaccataaaaggttagaaacctcttagatacccacttgtttaattattgc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36867680 |
tccactctataaggaacagtcataattacacccaacaaatagtaacttaacaccataaaaggttagaaacctcttagatacccacttgtttaattattgc |
36867581 |
T |
|
| Q |
108 |
atcttttttcccttaatcttccaattatataaatctttcaatctccatcaactttacttcaactccactctcttttccctacctttcaattccatcatgt |
207 |
Q |
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|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36867580 |
atcttttttcccgtaatcttccaattatataaatctatcaatctccatcaactttacttcaactccactctcttttccctacctttcaattccatcatgt |
36867481 |
T |
|
| Q |
208 |
cttctaattcatgcacaaactcttcttcaatcaatggattctataccttccttactcaaggactaaatgttcttcaccaatccttgatcctctcacataa |
307 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36867480 |
cttctaattcatgcacaaactcttcttcaatcaatggattctataccttccttactcaaggactaaatgttcttcaccaatccttgatcctctcacataa |
36867381 |
T |
|
| Q |
308 |
cttcatgtctatccaattcatttctgaggtgctttcatatctacaatcctttcattctcagttaacacttttggtacaaaacctttgtttaccaattggg |
407 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36867380 |
cttcatgtctatccaattcatttctgaggtgctttcatctctacaatcctttcattctcagttaacacttttggtacaaaacctttgtttaccaattgga |
36867281 |
T |
|
| Q |
408 |
gggaaatggttggatgaatacatggatgaaagctcaaggctttgggatatttgtcatgtacttaaatcttccatttctggaattgagaactattcttcag |
507 |
Q |
| |
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| T |
36867280 |
gggaaatggttggatgaatacatggatgaaagctcaaggctttgggatatttgtcatgtacttaaatcttccatttctggaattgagaactattcttcag |
36867181 |
T |
|
| Q |
508 |
ctggctctaatattgctacctcgttggatgtattccatcatttgactccagaggtttcacatcaggttggtatactttcacacaaaacctcttgaaaaga |
607 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36867180 |
ctggctctaatattgctacctcgttggatgtattccatcatttgactccagaggtttcacatcaggttggtatactttcacacaaaacctcttgaaaaga |
36867081 |
T |
|
| Q |
608 |
aggtttacaattgcaattttagtcgcgccatcaaggttactgatgtcaaatatcataatgtgaccgtgattgcgactttgatttagaatctttttgcggg |
707 |
Q |
| |
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||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36867080 |
aggtttacaattgtaattttagtcgcgccgtcaaggtttctgatgtcaaatatcataatgtgaccgtgattgcgactttgatttagaatctttttgcggg |
36866981 |
T |
|
| Q |
708 |
gatttggattgtctgaagacaacaatcccatgcattcatgcggtcaacatatcgacagttattggattgagatcaaacagttcatatttcaatgcaaatt |
807 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36866980 |
gatttggtttgtctgaagacaacaatcccatgcattcatgcggtcaacatatcgacagttattggattgagatcaaacagttcatatttcaatgcaaatt |
36866881 |
T |
|
| Q |
808 |
tgattcnnnnnnnaatctaaaataccaatcctcgaaatatggatcgttcaatctcgaccaacgccaattgataaactgaccggattgtgactttggtcaa |
907 |
Q |
| |
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| T |
36866880 |
tgatt-tttttttaatctaaaataccaattctcgaaatatggatcgttcaatctcgaccaacaccaattgataaactgaccggattgtgactttggtcaa |
36866782 |
T |
|
| Q |
908 |
tccaaatcccttttttagaagtat-aaattatgctccaaagttctgtcaaaagcttttgttttttg-tac-aattctttt-aaagctttatgtattggaa |
1003 |
Q |
| |
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||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||| |
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| T |
36866781 |
tccaaatcccttttttagaggtataaaattatgctccaaagttctgtcaaaagcttttgttttttgttacaaattcttttaaaagctttatgtattggaa |
36866682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 5e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 298 - 501
Target Start/End: Complemental strand, 642336 - 642133
Alignment:
| Q |
298 |
tctcacataacttcatgtctatccaattcatttctgaggtgctttcatatctacaatcctttcattctcagttaacacttttggtacaaaacctttgttt |
397 |
Q |
| |
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|||| ||||| ||||||||| |||||||| |||| | || | |||| |||||||||||| ||||| || | || |||||||| | || ||| | || |
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| T |
642336 |
tctctcataatttcatgtctttccaattcctttcacaagttatctcatctctacaatccttccattcccaactcacccttttggtccgcaagcttaggtt |
642237 |
T |
|
| Q |
398 |
accaattggggggaaatggttggatgaatacatggatgaaagctcaaggctttgggatatttgtcatgtacttaaatcttccatttctggaattgagaac |
497 |
Q |
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| T |
642236 |
acctgttggaggaaaatggcttgatgaatacatggatgaaagctcaagactttgggattcttgccatgtactcaaatctgccatttctggaattgataac |
642137 |
T |
|
| Q |
498 |
tatt |
501 |
Q |
| |
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|||| |
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|
| T |
642136 |
tatt |
642133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 411 - 493
Target Start/End: Complemental strand, 33137845 - 33137763
Alignment:
| Q |
411 |
aaatggttggatgaatacatggatgaaagctcaaggctttgggatatttgtcatgtacttaaatcttccatttctggaattga |
493 |
Q |
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|||||| | |||||||||||||||||||| || | ||||||||| ||||||||| ||||| ||| |||||| |||||||| |
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| T |
33137845 |
aaatggcttgatgaatacatggatgaaagttctaagctttgggaagcttgtcatgttcttaagtctggcatttcaggaattga |
33137763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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