View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4769-Insertion-4 (Length: 667)
Name: NF4769-Insertion-4
Description: NF4769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4769-Insertion-4 |
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Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 8 - 502
Target Start/End: Complemental strand, 33822990 - 33822480
Alignment:
| Q |
8 |
caattctggatgctagtcttaatagcagtttagctagtggtaatataaaattgattctatcatatcctaacnnnnnnngaacttcaatccaagtcataat |
107 |
Q |
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| T |
33822990 |
caattctggatgctagtctttatagcagtttagctagtggtaatataaaatt---------atatcctaacaaaaaaagaacttcaatccaagtcataat |
33822900 |
T |
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| Q |
108 |
catgtttgataacagataaaagagaatatctacagctcctatacagtgagttttttatactcagtttatagactcataattgtggattagtttaacataa |
207 |
Q |
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| T |
33822899 |
catgtttgataacagataaaagagaatatctacagctcctatacagtgagttttttatactcagtttatagactcataattgtggattagtttaacataa |
33822800 |
T |
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| Q |
208 |
ctacaggtcaaactttttgtataaagaaagagtgatgcataacgtgatatactttttgaaaaacacatgcaaacaaggcttttacagcagtggtggaatc |
307 |
Q |
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| T |
33822799 |
ctacaggtcaaactttttgtataaagaaagagtgatgcataacgtgatatactttttgaaaaacacatgcaaacaaggcttttacagcagtggtggaatc |
33822700 |
T |
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| Q |
308 |
taaaacatcaaacatgcataccatgacaaaaactgaaaccaatgcatgcgagctaaagactttgtgtaaatattatagccagcatgtgtgcagtgctgca |
407 |
Q |
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| T |
33822699 |
tataacatcaaacatgcataccatgacaaaaattgaaaccaatgcatgcgagctaaagactttgtgtaaatattatagctagcatgtgtgcagtgctgca |
33822600 |
T |
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| Q |
408 |
agaaaaacaccatta--------------atttagaattattaacaaaatttgtagttcaggtt-----------caacttcaaatttcttttgttgctt |
482 |
Q |
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| T |
33822599 |
agaaaaacaccattaatttgacagctttaatttagaattattaacaaaatttgtagttcaggttcaactcatctgcaacttcaaatttcttttgttgctt |
33822500 |
T |
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| Q |
483 |
cagtttacctgtcattgcag |
502 |
Q |
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| T |
33822499 |
cagtttacctgtcattgcag |
33822480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 547 - 667
Target Start/End: Complemental strand, 33822423 - 33822303
Alignment:
| Q |
547 |
gttaatattattgtcgtgtgaagagatatgtttcagttgttgaaagcctatagggcatgcaagtgattatctcttcataattaactcaattattagatga |
646 |
Q |
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| T |
33822423 |
gttaatattattgtcgtgtgaagagatatgtttcagttgttgaaagcctatagggcatgcaagtgattatctcttcataattaactcaattattagatga |
33822324 |
T |
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| Q |
647 |
tgatgatataatctagtccca |
667 |
Q |
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| T |
33822323 |
tgatgatataatctagtccca |
33822303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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