View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4769-Insertion-5 (Length: 621)
Name: NF4769-Insertion-5
Description: NF4769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4769-Insertion-5 |
 | |
|
| [»] scaffold1683 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 520; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 10 - 620
Target Start/End: Complemental strand, 39771043 - 39770437
Alignment:
| Q |
10 |
atcaaacacatgtggttatattaaattatttttatttgatgtctagtatttgtgcgagtacttcatagaatttgttgtatatataaactaattaaaaatt |
109 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39771043 |
atcaaacacatgtggttatattcaattatttttatttgatgtctaatatttgtgcgagtacttcatagaatttgttgtatatataaactaattaaaaatt |
39770944 |
T |
|
| Q |
110 |
gaaatgcagagtcaagggcgatagcacaatatattgatcatgagtatgctgataaggggactaagttaacaagcagtgactccaaaaagatggcaataat |
209 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
39770943 |
gaaatgcagagtcaagggcgataacacaatatattgatcatgagtatgctgataaggggactaagttaacaagcagtgactccaagaagatggcaataat |
39770844 |
T |
|
| Q |
210 |
gagtgtgtggtctgaagtggaaagcctacactacgatcaagtagcatcaatacttgtttgggaattggggataaagactttatttggaattcctttggat |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39770843 |
gagtgtgtggtctgaagtggaaagcctacactacgatcaagtagcatcaatacttgtttgggaattggggataaagactttatttggaattcctttggat |
39770744 |
T |
|
| Q |
310 |
tcaaatgttgttgaagagaatgaagccaagttggatatcattcttgatgtgtatgagaaaagattgtctaaatctaaatacttgggaggtgactctttca |
409 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39770743 |
tcaaatgttgtggaagagaatgaagccaagttggatatcattcttgatgtgtatgagaaaagattgtctaaatctaaatacttgggaggtgactctttca |
39770644 |
T |
|
| Q |
410 |
ccttggtggatctgcatcatttaccctcccttcattacttgatgaagtcacatagcaagaaattgtttgaatcaagaccatatgttagtgcttgggtagc |
509 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
39770643 |
ccttggtggatctgcatcacttaccctccctttattacttgatgaagtcacagagcaagaaattgtttgaatcaagaccttatgttagtgcttgggtggc |
39770544 |
T |
|
| Q |
510 |
tgatatcactgcaagaccagcttggtctaaagtccttgccatgatacctaattaaaacnnnnnnnnnnnnnnggatatttgggtgttgttttatggttta |
609 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
39770543 |
tgatatcactgcaagaccagcttggtctaaagtccttgccatgatacctaattaagac----cttttttttgggatatttgggtgttgttttatggttta |
39770448 |
T |
|
| Q |
610 |
agcaacttttt |
620 |
Q |
| |
|
||||||||||| |
|
|
| T |
39770447 |
agcaacttttt |
39770437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 95 - 564
Target Start/End: Complemental strand, 39756037 - 39755568
Alignment:
| Q |
95 |
aactaattaaaaattgaaatgcagagtcaagggcgatagcacaatatattgatcatgagtatgctgataaggggactaagttaacaagcagtgactccaa |
194 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||| ||| ||||||||||| |||| |||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
39756037 |
aactgattataaattgaaatgcagagtcaagggccataacacaatatattaatcacgagtatgctgataaggggaccaagctaacaagcagtgactccaa |
39755938 |
T |
|
| Q |
195 |
aaagatggcaataatgagtgtgtggtctgaagtggaaagcctacactacgatcaagtagcatcaatacttgtttgggaattggggataaagactttattt |
294 |
Q |
| |
|
||| ||||||||||| | ||||||||||||||||| |||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
39755937 |
gaagttggcaataatgggggtgtggtctgaagtggagagccatcactttgatcaagtagcatcaaaacttgtttgggaattggggataaagactttattt |
39755838 |
T |
|
| Q |
295 |
ggaattcctttggattcaaatgttgttgaagagaatgaagccaagttggatatcattcttgatgtgtatgagaaaagattgtctaaatctaaatacttgg |
394 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | || |||||||| | |
|
|
| T |
39755837 |
ggaattcctttggatccaaaaattgttgaagagaatgaagccaagttggatagtattcttgatgtgtatgagaaaagattgtctgagtccaaatactttg |
39755738 |
T |
|
| Q |
395 |
gaggtgactctttcaccttggtggatctgcatcatttaccctcccttcattacttgatgaagtcacatagcaagaaattgtttgaatcaagaccatatgt |
494 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||| |||||||| | |||||||||||||| |||| |
|
|
| T |
39755737 |
gaggtgactctttcaccttggtggatttgcatcatttaccttctcttcattacttgatgaagtcacaaagcaagaagctttttgaatcaagacctcatgt |
39755638 |
T |
|
| Q |
495 |
tagtgcttgggtagctgatatcactgcaagaccagcttggtctaaagtccttgccatgatacctaattaa |
564 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
39755637 |
tagtgcttgggtggctgatatcactgcaagaccagcttggtctgaagtccttgccatgatacctaattaa |
39755568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 95 - 564
Target Start/End: Complemental strand, 39761391 - 39760922
Alignment:
| Q |
95 |
aactaattaaaaattgaaatgcagagtcaagggcgatagcacaatatattgatcatgagtatgctgataaggggactaagttaacaagcagtgactccaa |
194 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||| ||| ||||||||||| |||| |||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
39761391 |
aactgattataaattgaaatgcagagtcaagggccataacacaatatattaatcacgagtatgctgataaggggaccaagctaacaagcagtgactccaa |
39761292 |
T |
|
| Q |
195 |
aaagatggcaataatgagtgtgtggtctgaagtggaaagcctacactacgatcaagtagcatcaatacttgtttgggaattggggataaagactttattt |
294 |
Q |
| |
|
||| ||||||||||| | ||||||||||||||||| |||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
39761291 |
gaagttggcaataatgggggtgtggtctgaagtggagagccatcactttgatcaagtagcatcaaaacttgtttgggaattggggataaagactttattt |
39761192 |
T |
|
| Q |
295 |
ggaattcctttggattcaaatgttgttgaagagaatgaagccaagttggatatcattcttgatgtgtatgagaaaagattgtctaaatctaaatacttgg |
394 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | || |||||||| | |
|
|
| T |
39761191 |
ggaattcctttggatccaaaaattgttgaagagaatgaagccaagttggatagtattcttgatgtgtatgagaaaagattgtctgagtccaaatactttg |
39761092 |
T |
|
| Q |
395 |
gaggtgactctttcaccttggtggatctgcatcatttaccctcccttcattacttgatgaagtcacatagcaagaaattgtttgaatcaagaccatatgt |
494 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||| |||||||| | |||||||||||||| |||| |
|
|
| T |
39761091 |
gaggtgactctttcaccttggtggatttgcatcatttaccttctcttcattacttgatgaagtcacaaagcaagaagctttttgaatcaagacctcatgt |
39760992 |
T |
|
| Q |
495 |
tagtgcttgggtagctgatatcactgcaagaccagcttggtctaaagtccttgccatgatacctaattaa |
564 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
39760991 |
tagtgcttgggtggctgatatcactgcaagaccagcttggtctgaagtccttgccatgatacctaattaa |
39760922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 359 - 564
Target Start/End: Complemental strand, 41527544 - 41527339
Alignment:
| Q |
359 |
tgtatgagaaaagattgtctaaatctaaatacttgggaggtgactctttcaccttggtggatctgcatcatttaccctcccttcattacttgatgaagtc |
458 |
Q |
| |
|
||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
41527544 |
tgtatgagaaaagattgtccgagtccaaatacttgggaggtgactctttcaccttggtggatttgcatcacttaccctcccttcattacttgatgaagtc |
41527445 |
T |
|
| Q |
459 |
acatagcaagaaattgtttgaatcaagaccatatgttagtgcttgggtagctgatatcactgcaagaccagcttggtctaaagtccttgccatgatacct |
558 |
Q |
| |
|
||| ||||||||| ||||||||||| |||| ||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41527444 |
acaaagcaagaaagtgtttgaatcacgaccttatgttattgcttgggtggctgatatcactggaagaccagcttggtctaaagtccttgccatgatacct |
41527345 |
T |
|
| Q |
559 |
aattaa |
564 |
Q |
| |
|
|||||| |
|
|
| T |
41527344 |
aattaa |
41527339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1683 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: scaffold1683
Description:
Target: scaffold1683; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 359 - 496
Target Start/End: Complemental strand, 232 - 95
Alignment:
| Q |
359 |
tgtatgagaaaagattgtctaaatctaaatacttgggaggtgactctttcaccttggtggatctgcatcatttaccctcccttcattacttgatgaagtc |
458 |
Q |
| |
|
||||||||| ||||||||| | || ||||||||||||||||||| |||||||||||||||| ||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
232 |
tgtatgagataagattgtccgagtccaaatacttgggaggtgactgtttcaccttggtggatttgcatcacttaccatcccttcattacttgatgaagtc |
133 |
T |
|
| Q |
459 |
acatagcaagaaattgtttgaatcaagaccatatgtta |
496 |
Q |
| |
|
||| ||||||||| ||||||||||| | || ||||||| |
|
|
| T |
132 |
acaaagcaagaaagtgtttgaatcacgtccttatgtta |
95 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University