View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4769-Insertion-6 (Length: 350)
Name: NF4769-Insertion-6
Description: NF4769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4769-Insertion-6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 141; Significance: 7e-74; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 8 - 245
Target Start/End: Original strand, 39147976 - 39148211
Alignment:
| Q |
8 |
gataattatacaaatgttgttttttaatgttacaatgtgaccattacacaaattacaagataaaattctactttaaacttcttatcaaatgaactaagaa |
107 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39147976 |
gataattatataaatattgttttttaatgttacaatgtgaccattacataaattacaagataaaattctactttaaacttcttatcaaatgaactaagaa |
39148075 |
T |
|
| Q |
108 |
tacttgttagcattnnnnnnnnnnnnnnnnngatgtaactcgaaattgttttgcaacttactagccgatcgagtatatacacactcgaaaagagactcga |
207 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
39148076 |
tactggttagcatt--aaaaaaaaaaaaaaagatgtaactcgaaattgttttgcaacttactagccgatcaagtatatacacactcgaaaagagactcga |
39148173 |
T |
|
| Q |
208 |
gtcctatatgctccnnnnnnnctctagcattggtttgt |
245 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |
|
|
| T |
39148174 |
gtcctatatgctccaaaaaaactctagcattggtttgt |
39148211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 269 - 350
Target Start/End: Original strand, 39148256 - 39148337
Alignment:
| Q |
269 |
aattatgagggcttctgaacgagtactaatgagcttttaagttttataattagtctaacttaatgaacttgaaagtcatgtg |
350 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
39148256 |
aattatgaggacttctgaacgagtactaatgagcttttaggttttataatcagtctaacttaatgaacttgaaagtcatgtg |
39148337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 98
Target Start/End: Original strand, 34600827 - 34600899
Alignment:
| Q |
27 |
ttttttaatgttacaatgtgaccattacacaaattacaagataaaat-tctactttaaacttcttatcaaatg |
98 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||| ||| ||||||| | | ||||||||||||||||||||| |
|
|
| T |
34600827 |
ttttttgatgttacaatgtgttgattacacaaatcccaaaataaaatatttgctttaaacttcttatcaaatg |
34600899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 95
Target Start/End: Complemental strand, 32615901 - 32615828
Alignment:
| Q |
23 |
gttgttttttaatgttacaatgtgaccattacacaaattacaagataaaa-ttctactttaaacttcttatcaa |
95 |
Q |
| |
|
|||||||||||||||| ||||||| | ||||| |||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
32615901 |
gttgttttttaatgtttcaatgtgttgaatacacgaattccaagataaaatttctactttaaacttcttatcaa |
32615828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 94
Target Start/End: Original strand, 13521756 - 13521824
Alignment:
| Q |
27 |
ttttttaatgttacaatgtgaccattacacaaattacaagataaaatt-ctactttaaacttcttatca |
94 |
Q |
| |
|
|||||||||||| ||||||| | |||||||||| ||| |||||||| |||||||||||||||||||| |
|
|
| T |
13521756 |
ttttttaatgtttcaatgtgtagaatacacaaatttcaaaataaaatttctactttaaacttcttatca |
13521824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 94
Target Start/End: Original strand, 13611291 - 13611359
Alignment:
| Q |
27 |
ttttttaatgttacaatgtgaccattacacaaattacaagataaaatt-ctactttaaacttcttatca |
94 |
Q |
| |
|
|||||||||||| ||||||| | |||||||||| ||| |||||||| |||||||||||||||||||| |
|
|
| T |
13611291 |
ttttttaatgtttcaatgtgtagaatacacaaatttcaaaataaaatttctactttaaacttcttatca |
13611359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 95
Target Start/End: Complemental strand, 29912175 - 29912131
Alignment:
| Q |
52 |
tacacaaattacaagataaaatt-ctactttaaacttcttatcaa |
95 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
29912175 |
tacacaaattttaagataaaatttctactttaaacttcttatcaa |
29912131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 98
Target Start/End: Complemental strand, 5389137 - 5389108
Alignment:
| Q |
69 |
aaaattctactttaaacttcttatcaaatg |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
5389137 |
aaaattctactttaaacttcttatcaaatg |
5389108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University