View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4769_high_1 (Length: 399)
Name: NF4769_high_1
Description: NF4769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4769_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 18 - 383
Target Start/End: Original strand, 13460929 - 13461294
Alignment:
| Q |
18 |
taaacagaatcacaccacaaaataattgctcttggtgatgttgaaatgctatcaacatattatgttagttacgaccacagcaacgtacttaaatatcaaa |
117 |
Q |
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| T |
13460929 |
taaacagaatcacaccacaaaataattgctcttggtgatgttgaaatgctatcaacatattatgttagttacgaccacagcaacgtacttaaatatcaaa |
13461028 |
T |
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| Q |
118 |
atatcatatcattcattaaactttcaccacaaagaggtttataacaccatgatgatatgatgttagtacttacatccaaaaaactaaaacaaagttgtct |
217 |
Q |
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| T |
13461029 |
atatcatatcattcattaaactttcaccacaaagaggtttataacaccatgatgatatgatgttagtacttacatccaaaaaactagaacaaagttgtct |
13461128 |
T |
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| Q |
218 |
aaaattggttcatgataatattcatcatacgatgtaacaaattacatccaaaaaagtagaataaaaggttgtctaaatgaggttcatgatgataaccata |
317 |
Q |
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| T |
13461129 |
aaaattggttcatgataatattcaccatacgatgtaacaaattacatccaaaaaagtagaataaaaggttgtctaaatgaggttcatgatgataaccata |
13461228 |
T |
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| Q |
318 |
atatgtaaccaattacatccnnnnnnncaacaaaaataaatttaatccatcattgtgtcaatttga |
383 |
Q |
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| T |
13461229 |
atatgtaaccaattacatccaaaaaaacaacaaaaataaatttaatccatcattgtgtcaatttga |
13461294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 6e-53; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 123 - 275
Target Start/End: Complemental strand, 42793345 - 42793192
Alignment:
| Q |
123 |
atatcattcattaaactttcaccacaaagaggtttataacaccatgatgatatgatgttagtacttacatccaaaaaa-ctaaaacaaagttgtctaaaa |
221 |
Q |
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|||| ||||||||||||||||||||||||||||| |||| | ||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
42793345 |
atattattcattaaactttcaccacaaagaggttcataatatcatgatgatattatgttactacttacatccaaaaaaactaaaacaaagttgtctaaaa |
42793246 |
T |
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| Q |
222 |
ttggttcatgataatattcatcatacgatgtaacaaattacatccaaaaaagta |
275 |
Q |
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| T |
42793245 |
ttgattcatgataatattcaccatatgatgcaacaaattacatccaaaaaagta |
42793192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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