View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4769_high_2 (Length: 344)

Name: NF4769_high_2
Description: NF4769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4769_high_2
NF4769_high_2
[»] chr6 (34 HSPs)
chr6 (197-337)||(26059545-26059678)
chr6 (197-337)||(26079515-26079648)
chr6 (150-337)||(25486852-25487042)
chr6 (150-337)||(26146450-26146640)
chr6 (270-337)||(25986741-25986808)
chr6 (20-185)||(26638820-26638985)
chr6 (20-185)||(26744786-26744951)
chr6 (238-336)||(27661938-27662036)
chr6 (284-337)||(25514427-25514480)
chr6 (247-321)||(27423901-27423975)
chr6 (41-196)||(26851998-26852165)
chr6 (250-339)||(27079030-27079119)
chr6 (120-196)||(27715139-27715218)
chr6 (281-339)||(27715034-27715092)
chr6 (19-116)||(26805937-26806034)
chr6 (120-196)||(27682437-27682516)
chr6 (41-116)||(26649963-26650038)
chr6 (41-116)||(26755931-26756006)
chr6 (120-190)||(28782487-28782560)
chr6 (120-190)||(28789861-28789934)
chr6 (120-184)||(28795879-28795946)
chr6 (256-331)||(25077802-25077877)
chr6 (119-190)||(26626659-26626733)
chr6 (119-190)||(26732636-26732710)
chr6 (150-202)||(27078815-27078867)
chr6 (85-115)||(26827377-26827407)
chr6 (247-289)||(27703284-27703326)
chr6 (62-107)||(26827315-26827360)
chr6 (119-191)||(26953130-26953205)
chr6 (150-198)||(25548451-25548499)
chr6 (19-55)||(26626538-26626574)
chr6 (19-55)||(26732515-26732551)
chr6 (41-105)||(26962610-26962674)
chr6 (40-122)||(27078695-27078774)
[»] chr4 (6 HSPs)
chr4 (19-190)||(18720714-18720885)
chr4 (18-190)||(18676184-18676356)
chr4 (19-190)||(18652126-18652297)
chr4 (19-190)||(18686224-18686395)
chr4 (19-190)||(18728150-18728321)
chr4 (19-185)||(18696035-18696201)
[»] scaffold0003 (1 HSPs)
scaffold0003 (247-321)||(63388-63462)
[»] scaffold0349 (2 HSPs)
scaffold0349 (120-196)||(16726-16805)
scaffold0349 (281-339)||(16852-16910)
[»] chr8 (2 HSPs)
chr8 (250-308)||(29270329-29270387)
chr8 (120-196)||(29270443-29270522)
[»] chr1 (2 HSPs)
chr1 (91-141)||(26139508-26139555)
chr1 (64-139)||(28124220-28124289)
[»] scaffold0419 (1 HSPs)
scaffold0419 (120-190)||(11005-11078)
[»] scaffold0277 (2 HSPs)
scaffold0277 (120-190)||(10265-10338)
scaffold0277 (120-184)||(1311-1378)


Alignment Details
Target: chr6 (Bit Score: 98; Significance: 3e-48; HSPs: 34)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 197 - 337
Target Start/End: Original strand, 26059545 - 26059678
Alignment:
Q  197 ggatgagattgaaatattaagcagaagagtacaagatgaaagaaagatatatgtggggtacattcctcggtttaggtccatcataaagttaaccgtcttc 296  Q
    ||||||||||||||||||||||||    | ||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26059545 ggatgagattgaaatattaagcagt---gcacaagatgaaagaaagat----gtggggtacattcctcggtttaggtccatcataaagttaaccgtcttc 26059637  T
Q  297 ttgttattctctcaatctcaacattgcaggtttgtcctttg 337  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  26059638 ttgttattctctcaatctcaacattgcaggtttgtgctttg 26059678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 197 - 337
Target Start/End: Original strand, 26079515 - 26079648
Alignment:
Q  197 ggatgagattgaaatattaagcagaagagtacaagatgaaagaaagatatatgtggggtacattcctcggtttaggtccatcataaagttaaccgtcttc 296  Q
    ||||||||||||||||||||||||    | ||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26079515 ggatgagattgaaatattaagcagt---gcacaagatgaaagaaagat----gtggggtacattcctcggtttaggtccatcataaagttaaccgtcttc 26079607  T
Q  297 ttgttattctctcaatctcaacattgcaggtttgtcctttg 337  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  26079608 ttgttattctctcaatctcaacattgcaggtttgtgctttg 26079648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 150 - 337
Target Start/End: Original strand, 25486852 - 25487042
Alignment:
Q  150 aaaaagcaaagatttatggaagtgggagtttcagaggcagaggaggagga----------tgagattgaaatattaagcagaagagtacaagatgaaaga 239  Q
    ||||||||||||||  ||||||||||||||||||||  || |||||||||          |||||||||||||||||||||    |  ||||||||||||    
T  25486852 aaaaagcaaagattggtggaagtgggagtttcagagaaaggggaggaggaggaggagggatgagattgaaatattaagcagt---gcgcaagatgaaaga 25486948  T
Q  240 aagatatatgtggggtacattcctcggtttaggtccatcataaagttaaccgtcttcttgttattctctcaatctcaacattgcaggtttgtcctttg 337  Q
    |||||    || ||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  25486949 aagat----gttgggtacattccttagtctaggtccatcataaagttaaccgtcttcttgttattctctcaatctcaacattgcaggtttgtgctttg 25487042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 150 - 337
Target Start/End: Original strand, 26146450 - 26146640
Alignment:
Q  150 aaaaagcaaagatttatggaagtgggagtttcagaggcagaggaggagga----------tgagattgaaatattaagcagaagagtacaagatgaaaga 239  Q
    ||||||||||||||  ||||||||||||||||||||  || |||||||||          |||||||||||||||||||||    |  ||||||||||||    
T  26146450 aaaaagcaaagattggtggaagtgggagtttcagagaaaggggaggaggaggaggagggatgagattgaaatattaagcagt---gcgcaagatgaaaga 26146546  T
Q  240 aagatatatgtggggtacattcctcggtttaggtccatcataaagttaaccgtcttcttgttattctctcaatctcaacattgcaggtttgtcctttg 337  Q
    |||||    || ||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26146547 aagat----gttgggtacattccttagtctaggtccatcataaagttaaccgtcttcttgttattctctcaatctcaacattgcaggtttgtgctttg 26146640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 270 - 337
Target Start/End: Original strand, 25986741 - 25986808
Alignment:
Q  270 aggtccatcataaagttaaccgtcttcttgttattctctcaatctcaacattgcaggtttgtcctttg 337  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  25986741 aggtccatcataaagttaaccgtcttcttgttattctctcaatctcaacattgcaggtttgtgctttg 25986808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 20 - 185
Target Start/End: Original strand, 26638820 - 26638985
Alignment:
Q  20 aatgggaatccatgtgttaagggagaaaagcaacacgaagtgggatgtaagattcaccgatcctaatagtagaaagagaaaattagatgaatatcttctc 119  Q
    |||||||||||| || |||| |||||||||||||||| ||  |||||| | ||||||| ||||| ||| ||||||||||||||||||||||||   |||     
T  26638820 aatgggaatccacgttttaaaggagaaaagcaacacggaggaggatgtgatattcaccaatccttataatagaaagagaaaattagatgaata---tctg 26638916  T
Q  120 aatacttcattatcacaatttcag---cccctgaaaaagcaaagatttatggaagtgggagtttcagag 185  Q
    ||| ||||||||||||||||| ||   ||  ||||||||||||||||  | | ||||||||||| ||||    
T  26638917 aatgcttcattatcacaatttgagtctcctttgaaaaagcaaagattggtaggagtgggagttttagag 26638985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 20 - 185
Target Start/End: Original strand, 26744786 - 26744951
Alignment:
Q  20 aatgggaatccatgtgttaagggagaaaagcaacacgaagtgggatgtaagattcaccgatcctaatagtagaaagagaaaattagatgaatatcttctc 119  Q
    |||||||||||| || |||| |||||||||||||||| ||  |||||| | ||||||| ||||| ||| ||||||||||||||||||||||||   |||     
T  26744786 aatgggaatccacgttttaaaggagaaaagcaacacggaggaggatgtgatattcaccaatccttataatagaaagagaaaattagatgaata---tctg 26744882  T
Q  120 aatacttcattatcacaatttcag---cccctgaaaaagcaaagatttatggaagtgggagtttcagag 185  Q
    ||| ||||||||||||||||| ||   ||  ||||||||||||||||  | | ||||||||||| ||||    
T  26744883 aatgcttcattatcacaatttgagtctcctttgaaaaagcaaagattggtaggagtgggagttttagag 26744951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 238 - 336
Target Start/End: Complemental strand, 27662036 - 27661938
Alignment:
Q  238 gaaagatatatgtggggtacattcctcggtttaggtccatcataaagttaaccgtcttcttgttattctctcaatctcaacattgcaggtttgtccttt 336  Q
    |||||| ||||||||||||||||||| | |  |||| |  |||||||||||||||||| ||||||| |||||||||||||| |||||||||||| ||||    
T  27662036 gaaagaaatatgtggggtacattccttgatccaggtgcgccataaagttaaccgtcttgttgttatcctctcaatctcaactttgcaggtttgtgcttt 27661938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 284 - 337
Target Start/End: Original strand, 25514427 - 25514480
Alignment:
Q  284 gttaaccgtcttcttgttattctctcaatctcaacattgcaggtttgtcctttg 337  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  25514427 gttaaccgtcttcttgttattctctcaatctcaacattgcaggtttgtgctttg 25514480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 247 - 321
Target Start/End: Complemental strand, 27423975 - 27423901
Alignment:
Q  247 atgtggggtacattcctcggtttaggtccatcataaagttaaccgtcttcttgttattctctcaatctcaacatt 321  Q
    |||| |||||||||||| ||| ||||| |||||||||||||||||  || |||||||||||||||||||||||||    
T  27423975 atgttgggtacattccttggtctaggttcatcataaagttaaccgctttgttgttattctctcaatctcaacatt 27423901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 41 - 196
Target Start/End: Original strand, 26851998 - 26852165
Alignment:
Q  41 ggagaaaagcaacacgaagtgggatgtaagattcaccgatcctaatagtagaaagagaaaattagatgaatatcttct---------caatacttcatta 131  Q
    ||||||||| |||||| || |||||||   ||||||| |||||  |||||||||||||||| |||||||||||||| |         |||||||||||||    
T  26851998 ggagaaaagtaacacggagggggatgtggtattcaccaatccttctagtagaaagagaaaactagatgaatatcttttcaattatagcaatacttcatta 26852097  T
Q  132 tcacaattt---cagcccctgaaaaagcaaagatttatggaagtgggagtttcagaggcagaggagga 196  Q
    |||||||||   |  || || |||||||||||||| ||||||||  ||||||||||| ||||||||||    
T  26852098 tcacaatttgtgcctcctctaaaaaagcaaagattgatggaagttagagtttcagagacagaggagga 26852165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 250 - 339
Target Start/End: Original strand, 27079030 - 27079119
Alignment:
Q  250 tggggtacattcctcggtttaggtccatcataaagttaaccgtcttcttgttattctctcaatctcaacattgcaggtttgtcctttgct 339  Q
    ||||||||||||||  || ||||| ||| || | |||| || |||| |||||||||||||||||||||||||| |||||||| |||||||    
T  27079030 tggggtacattcctttgtctaggtgcattatgaggttagccatcttgttgttattctctcaatctcaacattgaaggtttgtgctttgct 27079119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 120 - 196
Target Start/End: Complemental strand, 27715218 - 27715139
Alignment:
Q  120 aatacttcattatcacaatttcagcccc---tgaaaaagcaaagatttatggaagtgggagtttcagaggcagaggagga 196  Q
    ||||||||||||||||||||| |||| |   | ||||||||||||||  |||||||||||||||||||| ||||||||||    
T  27715218 aatacttcattatcacaatttgagcctcctctaaaaaagcaaagattggtggaagtgggagtttcagagacagaggagga 27715139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 281 - 339
Target Start/End: Complemental strand, 27715092 - 27715034
Alignment:
Q  281 aaagttaaccgtcttcttgttattctctcaatctcaacattgcaggtttgtcctttgct 339  Q
    |||||||| |||||||||||||||||||||||||||| | | ||||||||| |||||||    
T  27715092 aaagttaatcgtcttcttgttattctctcaatctcaagaatacaggtttgtgctttgct 27715034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 26805937 - 26806034
Alignment:
Q  19 aaatgggaatccatgtgttaagggagaaaagcaacacgaagtgggatgtaagattcaccgatcctaatagtagaaagagaaaattagatgaatatctt 116  Q
    |||| |||||||| ||||||| |||||||||||||||| ||  | ||||   ||||||| ||||| ||| |||||||| ||||| |||||||||||||    
T  26805937 aaatcggaatccacgtgttaatggagaaaagcaacacggaggagaatgtggtattcaccaatccttatattagaaagacaaaatcagatgaatatctt 26806034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 196
Target Start/End: Original strand, 27682437 - 27682516
Alignment:
Q  120 aatacttcattatcacaatttcagcccc---tgaaaaagcaaagatttatggaagtgggagtttcagaggcagaggagga 196  Q
    ||||||||||||||||||||| |||| |   | ||||||||||||||  ||||||| |||||||||||| ||||||||||    
T  27682437 aatacttcattatcacaatttgagcctcctctaaaaaagcaaagattggtggaagttggagtttcagagacagaggagga 27682516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 116
Target Start/End: Original strand, 26649963 - 26650038
Alignment:
Q  41 ggagaaaagcaacacgaagtgggatgtaagattcaccgatcctaatagtagaaagagaaaattagatgaatatctt 116  Q
    |||||||||||||| | || |||| || ||||||||  ||||| ||||||||||||||||| | ||||||||||||    
T  26649963 ggagaaaagcaacaaggagggggaagtgagattcactaatccttatagtagaaagagaaaacttgatgaatatctt 26650038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 116
Target Start/End: Original strand, 26755931 - 26756006
Alignment:
Q  41 ggagaaaagcaacacgaagtgggatgtaagattcaccgatcctaatagtagaaagagaaaattagatgaatatctt 116  Q
    |||||||||||||| | || |||| || ||||||||  ||||| ||||||||||||||||| | ||||||||||||    
T  26755931 ggagaaaagcaacaaggagggggaagtgagattcactaatccttatagtagaaagagaaaacttgatgaatatctt 26756006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 190
Target Start/End: Original strand, 28782487 - 28782560
Alignment:
Q  120 aatacttcattatcacaatttcagcccc---tgaaaaagcaaagatttatggaagtgggagtttcagaggcaga 190  Q
    ||||||||||||||||||||| |||| |   ||||||||||||||||  ||||||||| |||||||||| ||||    
T  28782487 aatacttcattatcacaatttgagcctcctctgaaaaagcaaagattggtggaagtggtagtttcagagacaga 28782560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 190
Target Start/End: Original strand, 28789861 - 28789934
Alignment:
Q  120 aatacttcattatcacaatttcagcccc---tgaaaaagcaaagatttatggaagtgggagtttcagaggcaga 190  Q
    ||||||||||||||||||||| |||| |   ||||||||||||||||  ||||||||| |||||||||| ||||    
T  28789861 aatacttcattatcacaatttgagcctcctctgaaaaagcaaagattggtggaagtggtagtttcagagacaga 28789934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 184
Target Start/End: Original strand, 28795879 - 28795946
Alignment:
Q  120 aatacttcattatcacaatttcagcccc---tgaaaaagcaaagatttatggaagtgggagtttcaga 184  Q
    ||||||||||||||||||||| |||| |   ||||||||||||||||  ||||||||| |||||||||    
T  28795879 aatacttcattatcacaatttgagcctcctctgaaaaagcaaagattggtggaagtggtagtttcaga 28795946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 331
Target Start/End: Original strand, 25077802 - 25077877
Alignment:
Q  256 acattcctcggttta-ggtccatcataaagttaaccgtcttcttgttattctctcaatctcaacattgcaggtttgt 331  Q
    |||||||| |||||| ||| |||| |||||||||||||||| ||||| || ||| |||| |||||||||||||||||    
T  25077802 acattccttggtttaaggtgcatcgtaaagttaaccgtcttgttgttgtt-tcttaatcacaacattgcaggtttgt 25077877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 190
Target Start/End: Original strand, 26626659 - 26626733
Alignment:
Q  119 caatacttcattatcacaatttcagcccc---tgaaaaagcaaagatttatggaagtgggagtttcagaggcaga 190  Q
    |||||||||||||||||| ||| |||| |   ||||||||||||||||  ||||| |||||||||||||| ||||    
T  26626659 caatacttcattatcacagtttgagcctcctctgaaaaagcaaagattggtggaaatgggagtttcagagacaga 26626733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 190
Target Start/End: Original strand, 26732636 - 26732710
Alignment:
Q  119 caatacttcattatcacaatttcagcccc---tgaaaaagcaaagatttatggaagtgggagtttcagaggcaga 190  Q
    |||||||||||||||||| ||| |||| |   ||||||||||||||||  ||||| |||||||||||||| ||||    
T  26732636 caatacttcattatcacagtttgagcctcctctgaaaaagcaaagattggtggaaatgggagtttcagagacaga 26732710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 202
Target Start/End: Original strand, 27078815 - 27078867
Alignment:
Q  150 aaaaagcaaagatttatggaagtgggagtttcagaggcagaggaggaggatga 202  Q
    ||||||||| ||||  |||||||||||||||| ||| ||||||||||||||||    
T  27078815 aaaaagcaaggattggtggaagtgggagtttccgagacagaggaggaggatga 27078867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 115
Target Start/End: Original strand, 26827377 - 26827407
Alignment:
Q  85 atagtagaaagagaaaattagatgaatatct 115  Q
    |||||||||||||||||||||||||||||||    
T  26827377 atagtagaaagagaaaattagatgaatatct 26827407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 289
Target Start/End: Complemental strand, 27703326 - 27703284
Alignment:
Q  247 atgtggggtacattcctcggtttaggtccatcataaagttaac 289  Q
    ||||||||||||||||| ||| ||| |||||||||||||||||    
T  27703326 atgtggggtacattccttggtctagctccatcataaagttaac 27703284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 107
Target Start/End: Original strand, 26827315 - 26827360
Alignment:
Q  62 ggatgtaagattcaccgatcctaatagtagaaagagaaaattagat 107  Q
    |||||| | ||||||| ||||| |||||||||||||||||||||||    
T  26827315 ggatgtgatattcaccaatccttatagtagaaagagaaaattagat 26827360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 191
Target Start/End: Original strand, 26953130 - 26953205
Alignment:
Q  119 caatacttcattatcacaatttcagcccc---tgaaaaagcaaagatttatggaagtgggagtttcagaggcagag 191  Q
    |||||||| |||||| |||||| |||| |   |||||||||| |||||| | |||||||||||||||||| |||||    
T  26953130 caatactttattatcgcaatttgagcctcctctgaaaaagcatagatttgttgaagtgggagtttcagagacagag 26953205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 198
Target Start/End: Original strand, 25548451 - 25548499
Alignment:
Q  150 aaaaagcaaagatttatggaagtgggagtttcagaggcagaggaggagg 198  Q
    ||||||||||||||  ||||||||||||||||||||  || ||||||||    
T  25548451 aaaaagcaaagattggtggaagtgggagtttcagagaaaggggaggagg 25548499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 26626538 - 26626574
Alignment:
Q  19 aaatgggaatccatgtgttaagggagaaaagcaacac 55  Q
    ||||||||||||||||||| | |||||||||||||||    
T  26626538 aaatgggaatccatgtgttgaaggagaaaagcaacac 26626574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 26732515 - 26732551
Alignment:
Q  19 aaatgggaatccatgtgttaagggagaaaagcaacac 55  Q
    ||||||||||||||||||| | |||||||||||||||    
T  26732515 aaatgggaatccatgtgttgaaggagaaaagcaacac 26732551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 105
Target Start/End: Original strand, 26962610 - 26962674
Alignment:
Q  41 ggagaaaagcaacacgaagtgggatgtaagattcaccgatcctaatagtagaaagagaaaattag 105  Q
    |||||||||||||| | || |||| || ||||||||  ||||| |||| ||||||||||||||||    
T  26962610 ggagaaaagcaacaaggagggggaagtgagattcactaatccttatagcagaaagagaaaattag 26962674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 122
Target Start/End: Original strand, 27078695 - 27078774
Alignment:
Q  40 gggagaaaagcaacacgaagtgggatgtaagattcaccgatcctaatagtagaaagagaaaattagatgaatatcttctcaat 122  Q
    ||||||||||||||| | || |||| || ||||||||  ||||| |||| |   ||||||| |||||||||||||||||||||    
T  27078695 gggagaaaagcaacaagcagggggaagtgagattcactaatccttatagca---agagaaagttagatgaatatcttctcaat 27078774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 7e-37; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 18720885 - 18720714
Alignment:
Q  19 aaatgggaatccatgtgttaagggagaaaagcaacacgaagtgggatgtaagattcaccgatcctaatagtagaaagagaaaattagatgaatatcttct 118  Q
    ||||||||||||| ||||| | |||||||| |||||||||   |||||| | ||||||| ||||| ||||||||||||||||||||||||||||   |||    
T  18720885 aaatgggaatccacgtgttgaaggagaaaaacaacacgaatgaggatgtgatattcaccaatccttatagtagaaagagaaaattagatgaata---tct 18720789  T
Q  119 caatacttcattatcacaatttcagc---ccctgaaaaagcaaagatttatggaagtgggagtttcagaggcaga 190  Q
    |||| ||||||||||||||||||| |   | ||||||||||| |||||| |||||||||||||||||||| ||||    
T  18720788 caatgcttcattatcacaatttcatcctacgctgaaaaagcatagatttgtggaagtgggagtttcagagacaga 18720714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 18676356 - 18676184
Alignment:
Q  18 aaaatgggaatccatgtgttaagggagaaaagcaacacgaagtgggatgtaagattcaccgatcctaatagtagaaagagaaaattagatgaatatcttc 117  Q
    |||||||||||||| ||||  | |||||||| |||||||||   |||||| | ||||||| ||||| ||||||||||||||||| ||||||||||   ||    
T  18676356 aaaatgggaatccacgtgtgcaaggagaaaaacaacacgaatgaggatgtgatattcaccaatccttatagtagaaagagaaaaatagatgaata---tc 18676260  T
Q  118 tcaatacttcattatcacaatttcagc---ccctgaaaaagcaaagatttatggaagtgggagtttcagaggcaga 190  Q
    ||||| ||||||||||||||||||| |   | ||||||||||| |||||| |||||||||||||||||||| ||||    
T  18676259 tcaatgcttcattatcacaatttcatcctacgctgaaaaagcatagatttgtggaagtgggagtttcagagacaga 18676184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 18652297 - 18652126
Alignment:
Q  19 aaatgggaatccatgtgttaagggagaaaagcaacacgaagtgggatgtaagattcaccgatcctaatagtagaaagagaaaattagatgaatatcttct 118  Q
    ||||||||||||| ||||| | |||||||| |||||||||   |||||| | |||||   ||||| ||||||||||||||||||||||||||||   |||    
T  18652297 aaatgggaatccacgtgttgaaggagaaaaacaacacgaatgaggatgtgatattcattaatccttatagtagaaagagaaaattagatgaata---tct 18652201  T
Q  119 caatacttcattatcacaatttcagc---ccctgaaaaagcaaagatttatggaagtgggagtttcagaggcaga 190  Q
    |||| ||||||||||||||||||| |   | ||||||||||| |||||| |||||||||||||||||||| ||||    
T  18652200 caatgcttcattatcacaatttcatccttcgctgaaaaagcatagatttgtggaagtgggagtttcagagacaga 18652126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 18686395 - 18686224
Alignment:
Q  19 aaatgggaatccatgtgttaagggagaaaagcaacacgaagtgggatgtaagattcaccgatcctaatagtagaaagagaaaattagatgaatatcttct 118  Q
    ||||||||||||| ||||  | |||||||| |||||||||   |||||| | ||||||| || || ||||||||||||||||||||||||||||   |||    
T  18686395 aaatgggaatccacgtgtggaaggagaaaaacaacacgaatgaggatgtgatattcaccaattcttatagtagaaagagaaaattagatgaata---tct 18686299  T
Q  119 caatacttcattatcacaatttcagc---ccctgaaaaagcaaagatttatggaagtgggagtttcagaggcaga 190  Q
    |||| ||||||||||||||||||| |   | ||||||||||| |||||| |||||||||||||||||||| ||||    
T  18686298 caatgcttcattatcacaatttcatccttcgctgaaaaagcatagatttgtggaagtgggagtttcagagacaga 18686224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 18728321 - 18728150
Alignment:
Q  19 aaatgggaatccatgtgttaagggagaaaagcaacacgaagtgggatgtaagattcaccgatcctaatagtagaaagagaaaattagatgaatatcttct 118  Q
    ||||||||||||| |||   | |||||||| |||||||||   |||||| | ||||||| ||||| |||||||| |||||||||||||||||||   |||    
T  18728321 aaatgggaatccacgtgcgcaaggagaaaaacaacacgaatgaggatgtgatattcaccaatccttatagtagatagagaaaattagatgaata---tct 18728225  T
Q  119 caatacttcattatcacaatttcagc---ccctgaaaaagcaaagatttatggaagtgggagtttcagaggcaga 190  Q
    |||| ||||||||||||||||||| |   | ||||||||||| |||||| |||||||||||||||||||| ||||    
T  18728224 caatgcttcattatcacaatttcatcctacgctgaaaaagcatagatttgtggaagtgggagtttcagagacaga 18728150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 185
Target Start/End: Complemental strand, 18696201 - 18696035
Alignment:
Q  19 aaatgggaatccatgtgttaagggagaaaagcaacacgaagtgggatgtaagattcaccgatcctaatagtagaaagagaaaattagatgaatatcttct 118  Q
    ||||||||||||| ||||  | ||||||||| ||||  ||   |||||| | ||||||| ||||| |||||||||||||| |||||||||||||   |||    
T  18696201 aaatgggaatccacgtgtggaaggagaaaagtaacataaatgaggatgtgatattcaccaatccttatagtagaaagagagaattagatgaata---tct 18696105  T
Q  119 caatacttcattatcacaatttcagc---ccctgaaaaagcaaagatttatggaagtgggagtttcagag 185  Q
    |||| ||||||||||||||||||| |   | ||||||||||| |||||||||||||| ||||||||||||    
T  18696104 caatgcttcattatcacaatttcatcctactctgaaaaagcatagatttatggaagtcggagtttcagag 18696035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 247 - 321
Target Start/End: Original strand, 63388 - 63462
Alignment:
Q  247 atgtggggtacattcctcggtttaggtccatcataaagttaaccgtcttcttgttattctctcaatctcaacatt 321  Q
    |||| |||||||||||| ||| ||||| |||||||||||||||||  || |||||||||||||||||||||||||    
T  63388 atgttgggtacattccttggtctaggttcatcataaagttaaccgctttgttgttattctctcaatctcaacatt 63462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 120 - 196
Target Start/End: Original strand, 16726 - 16805
Alignment:
Q  120 aatacttcattatcacaatttcagcccc---tgaaaaagcaaagatttatggaagtgggagtttcagaggcagaggagga 196  Q
    ||||||||||||||||||||| |||| |   | ||||||||||||||  |||||||||||||||||||| ||||||||||    
T  16726 aatacttcattatcacaatttgagcctcctctaaaaaagcaaagattggtggaagtgggagtttcagagacagaggagga 16805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 281 - 339
Target Start/End: Original strand, 16852 - 16910
Alignment:
Q  281 aaagttaaccgtcttcttgttattctctcaatctcaacattgcaggtttgtcctttgct 339  Q
    |||||||| |||||||||||||||||||||||||||| | | ||||||||| |||||||    
T  16852 aaagttaatcgtcttcttgttattctctcaatctcaagaatacaggtttgtgctttgct 16910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 250 - 308
Target Start/End: Complemental strand, 29270387 - 29270329
Alignment:
Q  250 tggggtacattcctcggtttaggtccatcataaagttaaccgtcttcttgttattctct 308  Q
    |||||||||| |||  || ||||||||| ||||||||||||||||||||||||||||||    
T  29270387 tggggtacataccttagtctaggtccattataaagttaaccgtcttcttgttattctct 29270329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 196
Target Start/End: Complemental strand, 29270522 - 29270443
Alignment:
Q  120 aatacttcattatcacaatttcagcccc---tgaaaaagcaaagatttatggaagtgggagtttcagaggcagaggagga 196  Q
    |||||||||||||||||||||  ||| |   | ||||||||||||||  |||||||||||||||||||| ||||||||||    
T  29270522 aatacttcattatcacaatttgtgcctcctctaaaaaagcaaagattggtggaagtgggagtttcagagacagaggagga 29270443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 91 - 141
Target Start/End: Original strand, 26139508 - 26139555
Alignment:
Q  91 gaaagagaaaattagatgaatatcttctcaatacttcattatcacaatttc 141  Q
    |||||||||||||||||||||||||   |||||||||||||||||||||||    
T  26139508 gaaagagaaaattagatgaatatct---caatacttcattatcacaatttc 26139555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 139
Target Start/End: Complemental strand, 28124289 - 28124220
Alignment:
Q  64 atgtaagattcaccgatcctaatagtagaaagagaaaattagatgaatatcttctcaatacttcattatcacaatt 139  Q
    |||| ||||||||||||||| ||||   |||||||||||||||| |||||||   |||||||||||||||||||||    
T  28124289 atgtcagattcaccgatccttatag---aaagagaaaattagattaatatct---caatacttcattatcacaatt 28124220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 190
Target Start/End: Original strand, 11005 - 11078
Alignment:
Q  120 aatacttcattatcacaatttcagcccc---tgaaaaagcaaagatttatggaagtgggagtttcagaggcaga 190  Q
    ||||||||||||||||||||| |||| |   ||||||||||||||||  ||||||||| |||||||||| ||||    
T  11005 aatacttcattatcacaatttgagcctcctctgaaaaagcaaagattggtggaagtggtagtttcagagacaga 11078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 190
Target Start/End: Complemental strand, 10338 - 10265
Alignment:
Q  120 aatacttcattatcacaatttcagcccc---tgaaaaagcaaagatttatggaagtgggagtttcagaggcaga 190  Q
    ||||||||||||||||||||| |||| |   ||||||||||||||||  ||||||||| |||||||||| ||||    
T  10338 aatacttcattatcacaatttgagcctcctctgaaaaagcaaagattggtggaagtggtagtttcagagacaga 10265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 184
Target Start/End: Complemental strand, 1378 - 1311
Alignment:
Q  120 aatacttcattatcacaatttcagcccc---tgaaaaagcaaagatttatggaagtgggagtttcaga 184  Q
    ||||||||||||| ||||||| |||| |   ||||||||||||||||  ||||||||| |||||||||    
T  1378 aatacttcattattacaatttgagcctcctctgaaaaagcaaagattggtggaagtggtagtttcaga 1311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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