View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4770_high_1 (Length: 641)
Name: NF4770_high_1
Description: NF4770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4770_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 427 - 627
Target Start/End: Complemental strand, 5465531 - 5465331
Alignment:
| Q |
427 |
gttaggggcaggcaggcctctttttatgggaggaatgaagttaacagttgaccacgaatattatgtccacgtgatcacgcattcggaacatcgatgactt |
526 |
Q |
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| T |
5465531 |
gttaggggcaggcaggcctctttttatgggaggaatgaagttaacagttgaccacgaatattatgtccacgtgatcacgcattcggaacatcgatgactt |
5465432 |
T |
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| Q |
527 |
gatgaacaacaacaatgtcatcaatgagttgtcgcaaatgttcagaacgcgtgaatgtgaactatttgattgaacaaccgcaatgtcatgcatcaccacc |
626 |
Q |
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| T |
5465431 |
gatgaacaacagcaaagtcaacaatgagttgtcggaaatgttcagaacgcgtgaatgtgaactatttgattgaacaaccgcaatgtcatgcatcaccacc |
5465332 |
T |
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| Q |
627 |
a |
627 |
Q |
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| T |
5465331 |
a |
5465331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 15 - 218
Target Start/End: Complemental strand, 5465943 - 5465740
Alignment:
| Q |
15 |
atcatcattcatcacacactgacccgactccaagaactggttcgggtcatcatgggacgcaggtttggaaaagagagttggggttgagtcattatcgtca |
114 |
Q |
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| T |
5465943 |
atcatcattcatcacacactgacccgactccaagaactggttcgggtcatcatgggacgctggtttggaaaagagagttggagttgagtcattatcgtca |
5465844 |
T |
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| Q |
115 |
ggtcggtttagatgagaatcagccggggagagaatagccggggcgtgattaaccgggttacgggtcgaaacgggttttgggattgtgggtagtgttttat |
214 |
Q |
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| T |
5465843 |
ggtcggtttagatgagaatcagccggtgagagaatggccggggcgtgggtaacggggttacgggtcgaaacgggttttgggattgtgggtggtgttttat |
5465744 |
T |
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| Q |
215 |
tacg |
218 |
Q |
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| T |
5465743 |
tacg |
5465740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 302 - 376
Target Start/End: Complemental strand, 5465656 - 5465582
Alignment:
| Q |
302 |
catgcatttgcaatactatgtattgtgtgaacaaaagaagaataagtacagagttagttagatagattcatatgt |
376 |
Q |
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| T |
5465656 |
catgcatttgcaatactatgtattgtgtgaacaaaagaagaattagtacagagttagttagatagattcatatgt |
5465582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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