View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4770_high_11 (Length: 327)
Name: NF4770_high_11
Description: NF4770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4770_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 317
Target Start/End: Original strand, 40740653 - 40740946
Alignment:
| Q |
18 |
tgtcaacaaaagaatcaaacaacttctgcatttgcgattctcgtattgcaacattggtttctccaaactcaaatgaactagtttccacacaaaaaacact |
117 |
Q |
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| T |
40740653 |
tgtcaacaaaagaatcaaacaacttctgcatttacgattctcgtattgcaacattggtttctccaaactcacatgaactagtttccacacaaaaaacact |
40740752 |
T |
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| Q |
118 |
agcaaagttccttaaaccatgttccaaaaacactccaagtccaacattgcatcattctggaacagtgtctcaaatgaactatcttcatcctaagaaactt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||| |||||||||||||||||||| |
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| T |
40740753 |
agcaaagttccttaaaccatgttccaaaaacactcca------acattgcatcattccgaaacagtgtctcaaatgaaccatcttcatcctaagaaactt |
40740846 |
T |
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| Q |
218 |
aacttcaaaggttggaaaaatcctcaagcaaaatggggtgattggtttgaaacattaacaggaaaacatggtttcatatggaaccaaacaggtctctgtg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40740847 |
aacttcaaaggttggaaaaatcctcaagcaaaatggggtgattggtttgaaacattaacaggaaaacatggtttcatatggaaccaaacaggtctctgtg |
40740946 |
T |
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