View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4770_high_3 (Length: 386)
Name: NF4770_high_3
Description: NF4770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4770_high_3 |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0133 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 157 - 386
Target Start/End: Original strand, 34899746 - 34899975
Alignment:
| Q |
157 |
gtcagtgatatcatctgcacaaattcacataaaattttgtagttggaagatacatacctttcatgtttggtgagaatggaaggaaaattttgagactata |
256 |
Q |
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| T |
34899746 |
gtcagtgatatcatctgcacaaattcacataaaattttgtagttggaagatacatacctttcatgtttggtgagaatggaaggaaaattttgagactata |
34899845 |
T |
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| Q |
257 |
aggttgcatacacgcaggggaagacacaatttagcttttgttgacatcaaatagcgagagaagaactaaagagagatgtgtttatatgcatataggtaaa |
356 |
Q |
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| T |
34899846 |
aggttgcatacacgcaggggaagacacaatttagcttttgttgacatcaaatagcgagagaagaactaaagagagatgtgtttatatgcatataggtaaa |
34899945 |
T |
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| Q |
357 |
gtttggtagtttcaactttcaagttgagat |
386 |
Q |
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| T |
34899946 |
gtttggtagtttcaactttcaagttgagat |
34899975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 35 - 96
Target Start/End: Original strand, 8959256 - 8959317
Alignment:
| Q |
35 |
ttcatgatatatgttctagtttgggtcaagggattatgtttattaaaaatctgaatccactg |
96 |
Q |
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| T |
8959256 |
ttcatgatatatgttctagtttgggtcaagggattatgtttattaaaaatctgaatccactg |
8959317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 35 - 96
Target Start/End: Complemental strand, 30624162 - 30624101
Alignment:
| Q |
35 |
ttcatgatatatgttctagtttgggtcaagggattatgtttattaaaaatctgaatccactg |
96 |
Q |
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| T |
30624162 |
ttcatgatatatgttctagttttggtcaagggattatatttattaaaaatctgaatccactg |
30624101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 35 - 96
Target Start/End: Original strand, 18882376 - 18882437
Alignment:
| Q |
35 |
ttcatgatatatgttctagtttgggtcaagggattatgtttattaaaaatctgaatccactg |
96 |
Q |
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| T |
18882376 |
ttcatgatatatgttctagtttggttcaatggattatgtttattaaaaatctgaatccactg |
18882437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 35 - 96
Target Start/End: Original strand, 2849 - 2910
Alignment:
| Q |
35 |
ttcatgatatatgttctagtttgggtcaagggattatgtttattaaaaatctgaatccactg |
96 |
Q |
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| T |
2849 |
ttcataatatatgttctagtttaggtcaagggattatgtttattaaaaatccgaatccactg |
2910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 35 - 96
Target Start/End: Original strand, 48313045 - 48313106
Alignment:
| Q |
35 |
ttcatgatatatgttctagtttgggtcaagggattatgtttattaaaaatctgaatccactg |
96 |
Q |
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| T |
48313045 |
ttcataatatatgttctagttttggtcaagggattatatttattaaaaatctgaatccactg |
48313106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 140
Target Start/End: Complemental strand, 12279183 - 12279155
Alignment:
| Q |
112 |
accctaaccctaaccctaaccctaaccct |
140 |
Q |
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| T |
12279183 |
accctaaccctaaccctaaccctaaccct |
12279155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 141
Target Start/End: Original strand, 9491729 - 9491757
Alignment:
| Q |
113 |
ccctaaccctaaccctaaccctaacccta |
141 |
Q |
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| T |
9491729 |
ccctaaccctaaccctaaccctaacccta |
9491757 |
T |
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