View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4771-Insertion-1 (Length: 1020)
Name: NF4771-Insertion-1
Description: NF4771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4771-Insertion-1 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 912; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 912; E-Value: 0
Query Start/End: Original strand, 34 - 1020
Target Start/End: Original strand, 3083744 - 3084730
Alignment:
| Q |
34 |
taagcaatgtgcattcttttactagtaaatgaatattccattcttccatattataagagtccagaaatttagtttttcaaatttgcaaaatagtaagtta |
133 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3083744 |
taagcaatgtgcattcttttactagtaaatgaatattccattcttccatattataagagtccagaaatttagtttttcaaatttgcaaaatagtaagtta |
3083843 |
T |
|
| Q |
134 |
gtctcttaaaataaagaaagtcaataatttagttccttcaccaagatatctcttaaatttgctaaattttaacaatgattaaattgactaacggttcatt |
233 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3083844 |
gtctcttaaaataaagaaagtcaataatttagttccttcaccaagatatctcttaaatttgctaaattttaacaatgattaaattgactaacggttcatt |
3083943 |
T |
|
| Q |
234 |
ttaagagactaaattgcaatttctcgaatttgaatgactaaatatgagtactaaaatgttaatttcctcactcttttcctatttattttggtgacttggt |
333 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3083944 |
ttaagagactaaattgcaatttctcgaattcgaatgactaaatatgagtactaaaatgttaatttcctcactcttttcccatttattttggtgacttggt |
3084043 |
T |
|
| Q |
334 |
ccatgtaataattattttgagaatgcatggtgtatgatattaaacagaaagatcaaattcaaggcctgttgcacatggagttctattcaaggatgcgcga |
433 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
3084044 |
ccatgtaataattattttgtgaatgcatggtgtatgatattaaacagaaagatcaaattcaaggcctgttgcacatggagttctatacaaggatgcacga |
3084143 |
T |
|
| Q |
434 |
gggacagaacacagagcatacttgagtcatgggactaagaatgagatcatagtatcagctggtgcactaggtagcccacaacttctgatgttgagtggaa |
533 |
Q |
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|||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3084144 |
gggacagaacacagggcatacttgaatcatgggactaagaatgagatcatagtatcagctggtgcactaggtagcccacaacttctgatgttgagtggaa |
3084243 |
T |
|
| Q |
534 |
ttggagcagcacatcaccttagggaacacaacatcagtgtagtgttagatcaacctttggtaggacaaggaatgtcagataatccaatgaacgctgttta |
633 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3084244 |
ttggagcaggacatcaccttagggaacacaacatcagtgtagtgttagatcaacctttggtaggacaaggaatgtcagataatccaatgaacgctgttta |
3084343 |
T |
|
| Q |
634 |
tgtcccgtctccttcccccgtagaggtctccctcatttcagttgttggcattaccaacttcggcagctacattgaagccgtgagcggtgcagccttcacc |
733 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3084344 |
tgtcccgtctccttcccccgtagaggtctccctcatttcagttgttggcattaccaacttcggcagctacattgaagccgtgagcggtgcagccttcacc |
3084443 |
T |
|
| Q |
734 |
agtaatggaagcgagttcaaaatgtttactcccaaggtacatttaacaatttgtgttcgatctaaatcaattcttacaaactagtgcgatatgttttcga |
833 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3084444 |
agtaatggaagcgagttcacaatgtttactcccaaggtacatttaacaatttgtgttccatctaaatcaattcttacaaactagtgcgatatgtcttcga |
3084543 |
T |
|
| Q |
834 |
cttatgaatactttttcaagacatggtacattttcttttaggaagacatactacatttactgcaaagctttcaaaacaacatgcaattacacttgctaag |
933 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3084544 |
cttattaatactttttcaagacatggtacattttcttttaggaagacatactacatttactgcaaagctttcaaaacaacatgcaattgcacttgctaag |
3084643 |
T |
|
| Q |
934 |
tcacacccaactccaatttattatgt-aaagttaaaacccaaaccaaataaacatcaatatggcctagctaacaaataacaatattac |
1020 |
Q |
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| T |
3084644 |
ttacacccaact-caatttattatgtaaaagttaaaatccaaaccaaataaacatcaatatggcctagctaacaaataacaatattac |
3084730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 289; E-Value: 1e-161
Query Start/End: Original strand, 313 - 864
Target Start/End: Original strand, 3092903 - 3093455
Alignment:
| Q |
313 |
tatttattttggtgacttggtccatgtaataattattttgagaatgcatggtgtatgatattaaacagaaagatcaaattcaaggcctgttgcacatgga |
412 |
Q |
| |
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||||||||||| || || ||||||| |||| || ||| || |||| ||| ||| ||||||| |||||| ||| || ||||| ||| ||||||||||| |
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| T |
3092903 |
tatttattttgttgtctcggtccatttaatgatgattatgtgaatacattgtgcatgatatcaaacaggtggattaagttcaaagccaattgcacatgga |
3093002 |
T |
|
| Q |
413 |
gttctattcaaggatgcgcgagggacagaacacagagcatacttgagtcatgggactaagaatgagatcatagtatcagctggtgcactaggtagcccac |
512 |
Q |
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| T |
3093003 |
gttctatacaaggatgcacgagggacagaacacagggcatacttgaatcatgggactaagaatgagatcatagtatcagctggtgcactaggtagcccac |
3093102 |
T |
|
| Q |
513 |
aacttctgatgttgagtggaattggagcagcacatcaccttagggaacacaacatcagtgtagtgttagatcaacctttggtaggacaaggaatgtcaga |
612 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||| ||||||| || |||||||||||||||||||| |
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| T |
3093103 |
aacttctgatgttgagtggaattggagcagcacatcaccttaagcaacataacatcagtgtagtgttacatcaaccatttgtaggacaaggaatgtcaga |
3093202 |
T |
|
| Q |
613 |
taatccaatgaacgctgtttatgtcccgtctccttcccccgtagaggtctccctcatttcagttgttggcattaccaacttcggcagctacattgaagcc |
712 |
Q |
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||| ||||||||| ||||||||||||| |||||||| || |||||||| ||||||||||| |||||||||||||||| ||| |||||||| ||||||||| |
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| T |
3093203 |
taacccaatgaactctgtttatgtcccatctccttctccggtagaggtttccctcatttctgttgttggcattaccagctttggcagctatattgaagcc |
3093302 |
T |
|
| Q |
713 |
gtgagcggtgcagccttcaccagtaatggaagcgagttcaaaatgtttactcccaaggtacatttaacaatttgtgttcgatctaaatcaattcttacaa |
812 |
Q |
| |
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| ||||| ||| | |||||| || | ||| || ||| ||||||| ||||| |||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
3093303 |
gctagcggcgcaacattcaccggttctcaaagagacttcggaatgttttctcccgaggtacattttaaaatttgtgttcgatctaaatcaattcttacaa |
3093402 |
T |
|
| Q |
813 |
actagtgcgatatgttttcgacttatga-atactttttcaagacatggtacat |
864 |
Q |
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||||||||||||||| || ||| ||||| |||||||| |||||||| ||||| |
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| T |
3093403 |
actagtgcgatatgtctttgacctatgacttactttttaaagacatgttacat |
3093455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 70
Target Start/End: Original strand, 3092163 - 3092196
Alignment:
| Q |
37 |
gcaatgtgcattcttttactagtaaatgaatatt |
70 |
Q |
| |
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|||||||||||||||||||||| ||||||||||| |
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| T |
3092163 |
gcaatgtgcattcttttactagcaaatgaatatt |
3092196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 41590799 - 41590839
Alignment:
| Q |
99 |
aatttagtttttcaaatttgcaaaatagtaagttagtctct |
139 |
Q |
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|||| |||||||||||||||||||||||||| ||||||||| |
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| T |
41590799 |
aattcagtttttcaaatttgcaaaatagtaatttagtctct |
41590839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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