View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4771-Insertion-11 (Length: 282)
Name: NF4771-Insertion-11
Description: NF4771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4771-Insertion-11 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-147; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 8 - 282
Target Start/End: Original strand, 1841112 - 1841386
Alignment:
| Q |
8 |
gtttcacataatcaattgcttctcgaagtattgaagccttgtctgtctataaaaatggaatattaaaattttagaaaaatatgatcaaaatatgttatac |
107 |
Q |
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| T |
1841112 |
gtttcacataatcaattgcttctcgaagtattgaagccttgtctgtctataaaaatggaatattaaaattttagaaaaatatgatcaaaatatattatac |
1841211 |
T |
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| Q |
108 |
gaataatggacccgatgaaactagtgacaaatttaccttgctcaagccgggaatagtggctgaaagtgcaatgaatttctcagacaactcctgtcttcgt |
207 |
Q |
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| T |
1841212 |
gaataatggatccgatgaaactagtgacaaatttaccttgctcaagccgggaatagtggctgaaagtgcaatgaatttctcagacaactcctgtcttcgt |
1841311 |
T |
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| Q |
208 |
tttctctctgccattatatgatcaatacactgtgaactgcttctacctctcttcactctattttgttgatttatt |
282 |
Q |
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| T |
1841312 |
tttctctctgccattatatgatcaatacactgtgaactgcttctacctctcttcactccattttgttgatttatt |
1841386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 129 - 265
Target Start/End: Original strand, 1823912 - 1824048
Alignment:
| Q |
129 |
tagtgacaaatttaccttgctcaagccgggaatagtggctgaaagtgcaatgaatttctcagacaactcctgtcttcgttttctctctgccattatatga |
228 |
Q |
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| T |
1823912 |
tagttacaaatttaccttgctcaatccaggaatagtagccgaaagtgcaatgaatttttcagacaattcttgtctcctttttctctctgccattatatga |
1824011 |
T |
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| Q |
229 |
tcaatacactgtgaactgcttctacctctcttcactc |
265 |
Q |
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| T |
1824012 |
tcaatacattgtgaactgcttctacctttcttcactc |
1824048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 1820848 - 1820920
Alignment:
| Q |
8 |
gtttcacataatcaattgcttctcgaagtattgaagccttgtctgtctataaaaatggaatattaaaatttta |
80 |
Q |
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| T |
1820848 |
gtttcacataatcaatcgcttctcgaagtaatgaagccttgtccatctataaagaaggaatcgtaaaatttta |
1820920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 115
Target Start/End: Original strand, 4701117 - 4701153
Alignment:
| Q |
79 |
tagaaaaatatgatcaaaatatgttatacgaataatg |
115 |
Q |
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| T |
4701117 |
tagaaaaatatgatcaaaacatgttatatgaataatg |
4701153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 106
Target Start/End: Complemental strand, 53801064 - 53801036
Alignment:
| Q |
78 |
ttagaaaaatatgatcaaaatatgttata |
106 |
Q |
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| T |
53801064 |
ttagaaaaatatgatcaaaatatgttata |
53801036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 115
Target Start/End: Complemental strand, 12514399 - 12514363
Alignment:
| Q |
79 |
tagaaaaatatgatcaaaatatgttatacgaataatg |
115 |
Q |
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| T |
12514399 |
tagaaaaatatgattaaaatatgttatatgaataatg |
12514363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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