View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4771-Insertion-2 (Length: 937)

Name: NF4771-Insertion-2
Description: NF4771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4771-Insertion-2
NF4771-Insertion-2
[»] chr8 (7 HSPs)
chr8 (8-873)||(34108904-34109765)
chr8 (7-238)||(34121379-34121610)
chr8 (320-481)||(34121148-34121314)
chr8 (576-625)||(34120959-34121008)
chr8 (799-871)||(29608697-29608765)
chr8 (755-816)||(3693504-3693565)
chr8 (755-816)||(18257480-18257541)
[»] chr3 (2 HSPs)
chr3 (755-857)||(11500468-11500566)
chr3 (755-870)||(36644760-36644875)
[»] chr7 (2 HSPs)
chr7 (759-858)||(3404002-3404097)
chr7 (822-858)||(25032825-25032861)
[»] chr4 (1 HSPs)
chr4 (755-858)||(36690225-36690323)
[»] chr1 (4 HSPs)
chr1 (755-871)||(28111467-28111578)
chr1 (705-747)||(2758218-2758260)
chr1 (755-846)||(24574035-24574122)
chr1 (826-871)||(16948925-16948970)
[»] chr2 (1 HSPs)
chr2 (755-858)||(15545182-15545281)
[»] chr5 (4 HSPs)
chr5 (822-883)||(10912149-10912211)
chr5 (755-811)||(11783033-11783089)
chr5 (755-811)||(36409577-36409633)
chr5 (824-873)||(11857386-11857435)


Alignment Details
Target: chr8 (Bit Score: 622; Significance: 0; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 622; E-Value: 0
Query Start/End: Original strand, 8 - 873
Target Start/End: Complemental strand, 34109765 - 34108904
Alignment:
Q  8 agttcttctattaacatctctgtttcttccatcggatgatccaatttctcatttaatagtctcatttcttcagctactggcgtgatccgatccaccagag 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34109765 agttcttctattaacatctctgtttcttccatcggatgatccaatttctcgtttaatagtctcatttcttcagctactggcgtgatccgatccaccagag 34109666  T
Q  108 agtcgaggtttttgcgtgaggttttgaacatgaaagctttggatatctggtttgtgactggttgcatcccttcttgaaccactgcgccaagaaatgcccc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34109665 agtcgaggtttttgcgtgaggttttgaacatgaaagctttggatatctggtttgtgactggttgcatcccttcttgaaccactgcgccaagaaatgcccc 34109566  T
Q  208 tccaatcaactctcctgccataactggatatctggtttgtgactggttgcatcccttcttgatgaagaaacttttcagttcaatgatttctctaggtttt 307  Q
    |||||||||||||||||||||||||||||||  |   ||  |  || | || | | ||||||||||||||||||||||||||||||||||||||||||||    
T  34109565 tccaatcaactctcctgccataactggatat--gaaatgaaatgggat-caacacctcttgatgaagaaacttttcagttcaatgatttctctaggtttt 34109469  T
Q  308 tctttcttccaatcaatgaaa-----ctaatataatatgagaatgcagtttttaggaaattcttgtctagtattgtttcgaattaaagattaaagaaatc 402  Q
    |||||||||||||||||||||     |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  34109468 tctttcttccaatcaatgaaatgaaactaatataatatgagaatgcagtttcaaggaaattcttgtctagtattgtttcgaattaaagattaaagaaatc 34109369  T
Q  403 tattatttttggcagaatttattaagaattaagaaaaaagagaccacaagtgtgaaagctcatagcatagtcaactcaataacatagtcagctcataaca 502  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  34109368 tattatttttggcagaatttattaagaattaagaaaaaagagaccacaagtgtgaaagctcataacatagtcaactcaataacatagtcagctcataaca 34109269  T
Q  503 tagtcaactcattaacatttcttaagagtttcttaaagatttctattaagaatttcttaatatagtataataagaccacgtttgaatgttacatcatctg 602  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34109268 tagtcaactcattaacatttctcaagagtttcttaaagatgtctattaagaatttcttaatatagtataataagaccacgtttgaatgttacatcatctg 34109169  T
Q  603 tagctgcaactggaatatctccactttgttctttaaaaatagcaccttcttcattgcatagnnnnnnnnnnnnnnattaacatgttattatannnnnnng 702  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||                 |||||||||||||||||       |    
T  34109168 tagctgcaactggaatatctccactttgttctttgaaaatagcaccttcttcattgca--------gttttttttattaacatgttattatatttttttg 34109077  T
Q  703 tcac--tatttatttcctgtgaactttatatgatatcctataatgaa-nnnnnnnactcaatttacttagcctttaacattcaagtttctaagcttaatt 799  Q
    ||||  |||||||||||||||||||||||||||||| ||||||||||        ||||||||||||||||||||||||||||| |||||||||||||||    
T  34109076 tcactatatttatttcctgtgaactttatatgatattctataatgaattttttttactcaatttacttagcctttaacattcaattttctaagcttaatt 34108977  T
Q  800 acaataactattgtttataataaatgcataacaatgaaaaataaagtaaagttttgtttccgattgacaaaaaa 873  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  34108976 acaataactattgtttataat-aatgcataacaatgaaaaataaagtaaagttttgtttgcaattgacaaaaaa 34108904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 7 - 238
Target Start/End: Complemental strand, 34121610 - 34121379
Alignment:
Q  7 aagttcttctattaacatctctgtttcttccatcggatgatccaatttctcatttaatagtctcatttcttcagctactggcgtgatccgatccaccaga 106  Q
    ||||||||| |||| ||  | |||||||||| | ||| ||||||| || ||||||||| ||   |||||||| ||| ||||| |||| || ||||| |||    
T  34121610 aagttcttccattagcacttttgtttcttcctttggacgatccaagttttcatttaatcgttcaatttcttctgctgctggcttgattcgttccacgaga 34121511  T
Q  107 gagtcgaggtttttgcgtgaggttttgaacatgaaagctttggatatctggtttgtgactggttgcatcccttcttgaaccactgcgccaagaaatgccc 206  Q
    ||||| | | |||| ||||   |||||||| | ||| |||||||||| || ||||||| |||||     |||||||||||||||||||||||||||||||    
T  34121510 gagtcaacgatttttcgtgtttttttgaacttcaaacctttggatatttgatttgtgaatggttttgctccttcttgaaccactgcgccaagaaatgccc 34121411  T
Q  207 ctccaatcaactctcctgccataactggatat 238  Q
    |||||| |||||||||||||||||||||||||    
T  34121410 ctccaaccaactctcctgccataactggatat 34121379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 320 - 481
Target Start/End: Complemental strand, 34121314 - 34121148
Alignment:
Q  320 tcaatgaaactaatataatatgagaatgcagtttttaggaaattcttgtctagtattgtttcgaattaaagattaaagaaatctatt-atttttggcaga 418  Q
    ||||||||||||||||||||||| || | || || ||||||||||||||||| || || |   | | ||||||||||||  | |||| ||||||||||||    
T  34121314 tcaatgaaactaatataatatgaaaaggtagcttctaggaaattcttgtctaataatgctagtagtgaaagattaaagatgtttatttatttttggcaga 34121215  T
Q  419 atttattaagaattaag--aaaaaagagac-cacaagtgtg-aaagctcatagcatagtcaactcaa 481  Q
    |||| ||||||||||||  |||||| ||||  ||||||||| ||||| |||| ||||||||||||||    
T  34121214 atttcttaagaattaaggaaaaaaatagacttacaagtgtgaaaagcacataacatagtcaactcaa 34121148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 576 - 625
Target Start/End: Complemental strand, 34121008 - 34120959
Alignment:
Q  576 gaccacgtttgaatgttacatcatctgtagctgcaactggaatatctcca 625  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  34121008 gaccacgtttgaatgttacatcatttgtagctggaactggaatatctcca 34120959  T

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Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 799 - 871
Target Start/End: Complemental strand, 29608765 - 29608697
Alignment:
Q  799 tacaataactattgtttataataaatgcataacaatgaaaaataaagtaaagttttgtttccgattgacaaaa 871  Q
    |||| |||||||||||||||||    |||||||||||||||||||||||||||||||||| | ||| ||||||    
T  29608765 tacactaactattgtttataat----gcataacaatgaaaaataaagtaaagttttgtttgcaatttacaaaa 29608697  T

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Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 755 - 816
Target Start/End: Complemental strand, 3693565 - 3693504
Alignment:
Q  755 actcaatttacttagcctttaacattcaagtttctaagcttaattacaataactattgttta 816  Q
    |||||||||| |||||||| |||| |||||||| |||||||||||||| |||||||| ||||    
T  3693565 actcaatttatttagccttgaacactcaagtttttaagcttaattacactaactattattta 3693504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 755 - 816
Target Start/End: Original strand, 18257480 - 18257541
Alignment:
Q  755 actcaatttacttagcctttaacattcaagtttctaagcttaattacaataactattgttta 816  Q
    |||||||||| |||||||| |||| ||||||||||||| ||| ||||| |||||||| ||||    
T  18257480 actcaatttatttagccttgaacactcaagtttctaagtttatttacactaactattattta 18257541  T

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Target: chr3 (Bit Score: 70; Significance: 5e-31; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 755 - 857
Target Start/End: Original strand, 11500468 - 11500566
Alignment:
Q  755 actcaatttacttagcctttaacattcaagtttctaagcttaattacaataactattgtttataataaatgcataacaatgaaaaataaagtaaagtttt 854  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| || ||||| |||||    |||||||||||||||||||||||||||||||||    
T  11500468 actcaatttacttagccttaaacattcaagtttctaagcttaattacactagctattatttat----aatgcataacaatgaaaaataaagtaaagtttt 11500563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 755 - 870
Target Start/End: Complemental strand, 36644875 - 36644760
Alignment:
Q  755 actcaatttacttagcctttaacattcaagtttctaagcttaattacaataactattgtttataataaatgcataacaatgaaaaataaagtaaagtttt 854  Q
    |||||||||| | |||||| |||| ||||||||||||||||||||||| ||||||||||||| |||  ||  |||||||||||||||||| |||||||||    
T  36644875 actcaatttattcagccttgaacactcaagtttctaagcttaattacattaactattgtttagaatgcatatataacaatgaaaaataaattaaagtttt 36644776  T
Q  855 gtttccgattgacaaa 870  Q
    |||| | |||||||||    
T  36644775 gtttgcaattgacaaa 36644760  T

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Target: chr7 (Bit Score: 51; Significance: 1e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 759 - 858
Target Start/End: Original strand, 3404002 - 3404097
Alignment:
Q  759 aatttacttagcctttaacattcaagtttctaagcttaattacaataactattgtttataataaatgcataacaatgaaaaataaagtaaagttttgttt 858  Q
    ||||| |||| |||| || ||||||||||||||||||||||||  |||||||| |||||    |||||||||||||||||||||||||||| ||||||||    
T  3404002 aatttgcttaaccttgaaaattcaagtttctaagcttaattacgctaactattatttat----aatgcataacaatgaaaaataaagtaaaattttgttt 3404097  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 822 - 858
Target Start/End: Complemental strand, 25032861 - 25032825
Alignment:
Q  822 aatgcataacaatgaaaaataaagtaaagttttgttt 858  Q
    |||||||||||||||||||||||||||| ||||||||    
T  25032861 aatgcataacaatgaaaaataaagtaaacttttgttt 25032825  T

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Target: chr4 (Bit Score: 51; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 755 - 858
Target Start/End: Original strand, 36690225 - 36690323
Alignment:
Q  755 actcaatttacttagcctttaacattcaagtttctaagcttaattacaataactattgtttataataaatgcataacaatgaaaaataaagtaaagtttt 854  Q
    ||||||||||||||||||| | | ||||||||||||||||||||| || |||||||| |||    | ||||||||||||||| |||||||||||||||||    
T  36690225 actcaatttacttagccttgagccttcaagtttctaagcttaatt-cactaactattattt----ttaatgcataacaatgagaaataaagtaaagtttt 36690319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 2e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 755 - 871
Target Start/End: Original strand, 28111467 - 28111578
Alignment:
Q  755 actcaatttacttagcctttaacattcaagtttctaagcttaattacaataactattgtttataataaatgcataacaatgaaaaataaagtaaagtttt 854  Q
    |||||||||| |||| ||| |||| |||||||||||||||| |||||| ||||| || |||| |     |||||||||||||||||||||||||||||||    
T  28111467 actcaatttatttagacttgaacactcaagtttctaagcttgattacactaacttttatttaga-----tgcataacaatgaaaaataaagtaaagtttt 28111561  T
Q  855 gtttccgattgacaaaa 871  Q
    |||| | ||| ||||||    
T  28111562 gtttgcaatttacaaaa 28111578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 705 - 747
Target Start/End: Original strand, 2758218 - 2758260
Alignment:
Q  705 actatttatttcctgtgaactttatatgatatcctataatgaa 747  Q
    ||||||||||| ||||||||||||||||||||  |||||||||    
T  2758218 actatttattttctgtgaactttatatgatattgtataatgaa 2758260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 755 - 846
Target Start/End: Original strand, 24574035 - 24574122
Alignment:
Q  755 actcaatttacttagcctttaacattcaagtttctaagcttaattacaataactattgtttataataaatgcataacaatgaaaaataaagt 846  Q
    |||| ||||| |||||||| |||| |||||||||||| ||||||||||||  ||||| ||||     |||||||| |||| |||||||||||    
T  24574035 actcgatttatttagccttcaacactcaagtttctaatcttaattacaatgcctattattta----gaatgcataccaataaaaaataaagt 24574122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 826 - 871
Target Start/End: Original strand, 16948925 - 16948970
Alignment:
Q  826 cataacaatgaaaaataaagtaaagttttgtttccgattgacaaaa 871  Q
    |||||||||||||||| |||||| ||||||||||| ||| ||||||    
T  16948925 cataacaatgaaaaattaagtaatgttttgtttccaatttacaaaa 16948970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 755 - 858
Target Start/End: Complemental strand, 15545281 - 15545182
Alignment:
Q  755 actcaatttacttagcctttaacattcaagtttctaagcttaattacaataactattgtttataataaatgcataacaatgaaaaataaagtaaagtttt 854  Q
    |||||| ||| ||||||||  ||| |||||||||||||||||||||||  ||||||| ||||     ||||||| | |||||||||||||||||||||||    
T  15545281 actcaaattatttagccttgtacactcaagtttctaagcttaattacaccaactattattta----gaatgcattaaaatgaaaaataaagtaaagtttt 15545186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 822 - 883
Target Start/End: Original strand, 10912149 - 10912211
Alignment:
Q  822 aatgcataacaatgaaaaataaagtaaagttttgtttccgattgacaaaa-aatatcaattta 883  Q
    |||| |||||||||||||||||||||||||||||||| | ||| |||||| ||||| ||||||    
T  10912149 aatggataacaatgaaaaataaagtaaagttttgtttgcaatttacaaaagaatattaattta 10912211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 755 - 811
Target Start/End: Complemental strand, 11783089 - 11783033
Alignment:
Q  755 actcaatttacttagcctttaacattcaagtttctaagcttaattacaataactatt 811  Q
    |||||||||| ||| ||||||| | |||| |||||||||||||||||| ||||||||    
T  11783089 actcaatttatttaacctttaagactcaaatttctaagcttaattacactaactatt 11783033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 755 - 811
Target Start/End: Original strand, 36409577 - 36409633
Alignment:
Q  755 actcaatttacttagcctttaacattcaagtttctaagcttaattacaataactatt 811  Q
    |||||||||||||||| || |||||||| |||||||| |||||||| | ||||||||    
T  36409577 actcaatttacttagcattgaacattcatgtttctaatcttaattaaactaactatt 36409633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 824 - 873
Target Start/End: Original strand, 11857386 - 11857435
Alignment:
Q  824 tgcataacaatgaaaaataaagtaaagttttgtttccgattgacaaaaaa 873  Q
    |||||||||||| |||||||||||| ||||||||| | ||| ||||||||    
T  11857386 tgcataacaatggaaaataaagtaacgttttgtttgcaatttacaaaaaa 11857435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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