View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4771-Insertion-4 (Length: 823)

Name: NF4771-Insertion-4
Description: NF4771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4771-Insertion-4
NF4771-Insertion-4
[»] chr2 (24 HSPs)
chr2 (150-478)||(12063792-12064117)
chr2 (525-823)||(12064300-12064598)
chr2 (525-823)||(12058847-12059146)
chr2 (531-823)||(12051442-12051714)
chr2 (150-417)||(12073874-12074154)
chr2 (150-420)||(12050917-12051199)
chr2 (245-401)||(12066467-12066637)
chr2 (150-396)||(12046675-12046929)
chr2 (253-420)||(12058330-12058511)
chr2 (150-379)||(12053445-12053686)
chr2 (8-153)||(12062374-12062507)
chr2 (416-481)||(12058610-12058675)
chr2 (525-648)||(12047224-12047347)
chr2 (424-481)||(12046988-12047045)
chr2 (424-486)||(12066706-12066768)
chr2 (427-481)||(12051303-12051357)
chr2 (416-481)||(12074261-12074324)
chr2 (749-816)||(5573652-5573719)
chr2 (749-816)||(5582927-5582994)
chr2 (425-483)||(5570069-5570127)
chr2 (732-781)||(12047371-12047420)
chr2 (71-135)||(12077321-12077385)
chr2 (767-816)||(5593419-5593468)
chr2 (425-481)||(12075674-12075728)
[»] chr4 (1 HSPs)
chr4 (150-303)||(30353563-30353714)


Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-150; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 150 - 478
Target Start/End: Original strand, 12063792 - 12064117
Alignment:
Q  150 gaaatcatattgaaaaagcgaacaatctcatagttaaatattgagccaattacttttatataccactaatctttatgatctccgccacnnnnnnnctcaa 249  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||| |||||||||||||||||||       |||||    
T  12063792 gaaattatattgaaaaagcgaacaatctcatagttaaatattgagccaa---cttttatataccactattctttatgatctccgccactttttttctcaa 12063888  T
Q  250 ctttgtttcaattcaattatgagatttctaaatatcaatttaagaatgcttatgaggttgattgtaaagaatttgctacgttggaaaagtaatcttatat 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  12063889 ctttgtttcaattcaattatgagatttctaaatatcaatttaagaatgcttatgaggttgattgtaaagaatttgctgcgttggaaaagtaatcttatat 12063988  T
Q  350 aagcagttgtctgaaaataatctcaattattggatcataagatggtgaacatacatcaattttttgaaatatgacttttagtcccacattgctaggaaag 449  Q
     ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12063989 gagcagttgtctgaaaataatctcaattattggatcattagatggtggacatacatcaattttttgaaatatgacttttagtcccacattgctaggaaag 12064088  T
Q  450 aaacataacacatgtgaagttgttatata 478  Q
    |||||||||||||||||||||||||||||    
T  12064089 aaacataacacatgtgaagttgttatata 12064117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 525 - 823
Target Start/End: Original strand, 12064300 - 12064598
Alignment:
Q  525 gttggatggtttaaaaagtcaaaaatttctttagaaa-cataaccttgatcattttctttttcgatttcatattagcttgttagcactctatctcaggat 623  Q
    |||||| ||||||||| |||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  12064300 gttggacggtttaaaa-gtcaaaaatttctttagacatcataaccttgatcattttcttttttgatttcatattagcttgttagcactctatctcaggat 12064398  T
Q  624 aattattatgaaaaagattatattatagataataatgtaatgtaacttgccaaaaaaccaattatttgtatggtccatcattaatacttatgagttatgt 723  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12064399 aattattatgaaaaagattatattatagataataatgtaatgtaacttgccaaaaaaccaattatttgtatggtccatcattaatacttatgagttatgt 12064498  T
Q  724 cttcgtcttgttcttggttggttattctggattcactagcttcgttagattttcttcttagaggcggaatctatgatcaagacatggttggtgatgctta 823  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  12064499 cttcgtcttgttcttggttggttattctggattcactagcttcattatattttcttcttagagacggaatctatgatcaagacatggttggtgatgctta 12064598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 525 - 823
Target Start/End: Original strand, 12058847 - 12059146
Alignment:
Q  525 gttggatggtttaaaaagtcaaaaatttctttagaaac-ataaccttgatcattttctttttcgatttcatattagcttgttagcactctatctcaggat 623  Q
    |||||| |||||||||||| |||||  |||||| | |  |||||||| |||||||| | ||||   |||| ||||||||||||||||||||||||| |||    
T  12058847 gttggacggtttaaaaagtaaaaaaaatctttaaacattataaccttcatcatttt-tgtttcatattcaaattagcttgttagcactctatctcaagat 12058945  T
Q  624 aattattatgaaaaaga-ttatattatagataataatgtaatgtaacttgccaaaaaaccaattatttgtatggtccatcattaatacttatgagttatg 722  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||| ||||||||||    
T  12058946 aattattatgaaaaaaaattatattatagataataatgtaatgtaacttaccaaaaaaccaattattcgtgtggtccatcattaatactcatgagttatg 12059045  T
Q  723 tcttcgtcttgttcttggttggttattctggattcactagcttcgttagattttcttcttagaggcggaatctatgatcaagacatggttggtgatgctt 822  Q
    ||||| |||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  12059046 tcttcatcttgttcttggttggttattctggattcactagtttcattatattttcttcttagagacggaatctatgatcaagacatggttggtgatgctt 12059145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 531 - 823
Target Start/End: Original strand, 12051442 - 12051714
Alignment:
Q  531 tggtttaaaaagtcaaaaatttctttagaaacataaccttgatcattttctttttcgatttcatattagcttgttagcactctatctcaggataattatt 630  Q
    ||||||||||||| |||||||||||||       ||||||||||||||||||||| | ||||| ||||||||||||||||||| |||||  |||||||||    
T  12051442 tggtttaaaaagtaaaaaatttcttta-------aaccttgatcattttcttttt-gttttcaaattagcttgttagcactctctctcaatataattatt 12051533  T
Q  631 atgaaaaagattatattatagataataatgtaatgtaacttgccaaaaaaccaattatttgtatggtccatcattaatacttatgagttatgtcttcgtc 730  Q
    ||| || ||||||| |     ||||||||||||| ||||||||||||||| |||||||| || | ||||||||||| ||||||||       ||||| ||    
T  12051534 atgtaatagattatgt-----ataataatgtaatataacttgccaaaaaatcaattattcgtgtagtccatcattactacttatg-------tcttcatc 12051621  T
Q  731 ttgttcttggttggttattctggattcactagcttcgttagattttcttcttagaggcggaatctatgatcaagacatggttggtgatgctta 823  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  12051622 ttgttcttggttggttattctggattcaccagcttcattagattttcttcttagagacggaatctatgatcaagacatggttggtgatgctta 12051714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 150 - 417
Target Start/End: Original strand, 12073874 - 12074154
Alignment:
Q  150 gaaatcatattgaaaaagcgaacaatctcata--gttaaatattgagccaattacttttatataccactaatctttatgatctccgccacnnnnnnnctc 247  Q
    |||||||||||||||||| ||||||||||| |  |||||| ||||||||||   |||||||||||||||| |||||||| |||  || ||        ||    
T  12073874 gaaatcatattgaaaaagtgaacaatctcacacagttaaaaattgagccaa---cttttatataccactattctttatggtctttgcaacttttttcttc 12073970  T
Q  248 aactttgtttcaattcaattatgagatttctaaatatcaatttaagaatgcttatg--------------aggttgattgtaaagaatttgctacgttgg 333  Q
    |||||||||||| ||||||||||  |||||||||||||||||||||||||||||||              | ||||||| ||||||||||||||||||||    
T  12073971 aactttgtttcagttcaattatggtatttctaaatatcaatttaagaatgcttatgtaacttataatgtgatgttgattataaagaatttgctacgttgg 12074070  T
Q  334 aaaagtaatcttatataagcagttgtctgaaaataatctcaattattggatcataagatggtgaacatacatcaattttttgaa 417  Q
    |||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||    
T  12074071 aaaagtgatcttatataagtagttgtctgaaaataatcttaattattggatcataagatggtggacatacatcaattctttgaa 12074154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 150 - 420
Target Start/End: Original strand, 12050917 - 12051199
Alignment:
Q  150 gaaatcatattgaaaaagcgaacaatctcata--gttaaatattgagccaattacttttatataccactaatctttatgatctccgccacnnnnnnnctc 247  Q
    |||||||||||||||||| ||||||||||| |  |||||| | ||||||||   ||||||||||| |||| |||||||| |||| |||||       |||    
T  12050917 gaaatcatattgaaaaagtgaacaatctcacacagttaaaaaatgagccaa---cttttatatactactattctttatggtctctgccacgtttttcctc 12051013  T
Q  248 aactttgtttcaattcaattatgagatttctaaatatcaatttaagaatgcttatg--------------aggttgattgtaaagaatttgctacgttgg 333  Q
    ||||||||| || ||||||||||| |||||||||||||| ||||||||||||||||              ||||||||| |||||| ||| |||||||||    
T  12051014 aactttgttgcagttcaattatgatatttctaaatatcattttaagaatgcttatgtaacttataatgtgaggttgattataaagatttt-ctacgttgg 12051112  T
Q  334 aaaagtaatcttatataagcagttgtctgaaaataatctcaattattggatcataagatggtgaacatacatcaattttttgaaata 420  Q
    |||| | |||||||| ||| | ||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||| |||||||||    
T  12051113 aaaattgatcttatacaagtaattgtctgaaaataatatcaattattggatcataagatggtggacatatatcaattctttgaaata 12051199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 245 - 401
Target Start/End: Original strand, 12066467 - 12066637
Alignment:
Q  245 ctcaactttgtttcaattcaattatgagatttctaaatatcaatttaagaatgcttatg--------------aggttgattgtaaagaatttgctacgt 330  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||              ||||||||| |||||||||||||||||    
T  12066467 ctcaactttgtttcaattcaattatgatatttctaaatatcaatttaagaatgcttatgtaacttataatatgaggttgattataaagaatttgctacgt 12066566  T
Q  331 tggaaaagtaatcttatataagcagttgtctgaaaataatctcaattattggatcataagatggtgaacat 401  Q
    ||||||| | |||||||| ||| |||||||||||||||||||||||||||||| ||||||| |||| ||||    
T  12066567 tggaaaattgatcttatacaagtagttgtctgaaaataatctcaattattggaacataagagggtggacat 12066637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 150 - 396
Target Start/End: Original strand, 12046675 - 12046929
Alignment:
Q  150 gaaatcatattgaaaaagcgaacaatctcata--gttaaatattgagccaattacttttatataccactaatctttatgatctccgccacnnnnnnnctc 247  Q
    |||||||||||||||||| ||||||||||| |  |||||| |||||| |||   ||||||||||| |||| |||||||| |||  |||||       |||    
T  12046675 gaaatcatattgaaaaagtgaacaatctcacacagttaaaaattgagtcaa---cttttatatactactattctttatggtctttgccacttttttcctc 12046771  T
Q  248 aactttgtttcaattcaattatgagatttctaaatatcaatttaagaatgct--------------tatgaggttgattgtaaagaatttgctacgttgg 333  Q
    |||  ||||||| || ||||||||||||||||||||||||||||||||||||              ||||||||||||| ||||||||     |||||||    
T  12046772 aaccctgtttcagttaaattatgagatttctaaatatcaatttaagaatgctcatgtaacttataatatgaggttgattataaagaat-----acgttgg 12046866  T
Q  334 aaaagtaatcttatataagcagttgtctgaaaataatctcaattattggatcataagatggtg 396  Q
    |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  12046867 aaaagtgatcttatataggcagttgtctgaaaataatctcaattattggatcataagatggtg 12046929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 253 - 420
Target Start/End: Original strand, 12058330 - 12058511
Alignment:
Q  253 tgtttcaattcaattatgagatttctaaatatcaatttaagaatgcttatg--------------aggttgattgtaaagaatttgctacgttggaaaag 338  Q
    ||||||| ||||||||||| ||||||||||||||||||| |||||||||||              ||||||||| |||||||||||||||| ||||||||    
T  12058330 tgtttcagttcaattatgatatttctaaatatcaatttatgaatgcttatgtaacttataatgtgaggttgattataaagaatttgctacgctggaaaag 12058429  T
Q  339 taatcttatataagcagttgtctgaaaataatctcaattattggatcataagatggtgaacatacatcaattttttgaaata 420  Q
    | |||||||||||| ||||||||||||| ||| |||||||||||||||||| |||||  ||||||||||||| |||||||||    
T  12058430 tgatcttatataagtagttgtctgaaaaaaatatcaattattggatcataatatggttgacatacatcaattctttgaaata 12058511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 150 - 379
Target Start/End: Original strand, 12053445 - 12053686
Alignment:
Q  150 gaaatcatattgaaaaagcgaacaatctcata--gttaaatattgagccaattacttttatataccactaatctttatgatctccgccacnnnnnnnctc 247  Q
    ||||||||||||||||||  |||||||||| |  |||||| |||||| |||   |||||||||   |||| ||||||| |||||||||||       |||    
T  12053445 gaaatcatattgaaaaagtaaacaatctcacacagttaaaaattgagtcaa---cttttatatggtactattctttat-atctccgccacttttttcctc 12053540  T
Q  248 aactttgtttcaattcaattatgagatttctaaatatcaatttaagaatgctta--------------tgaggttgattgtaaagaatttgctacgttgg 333  Q
    ||| |||||||| || ||||||||||||||||||||||||||||||||||||||              ||||||||||| |||||||||||||| ||||     
T  12053541 aaccttgtttcagtttaattatgagatttctaaatatcaatttaagaatgcttatgtaacatataatgtgaggttgattataaagaatttgctaagttga 12053640  T
Q  334 aaaagtaatcttatataagcagttgtctgaaaataatctcaattat 379  Q
    |||||| |||||||  ||| ||||||||||||||||||||||||||    
T  12053641 aaaagtgatcttatgcaagtagttgtctgaaaataatctcaattat 12053686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 8 - 153
Target Start/End: Original strand, 12062374 - 12062507
Alignment:
Q  8 atcacaaccattcgcttcacgctgcactgaaatttgagcgttatttcagatnnnnnnnnnnnntatgcttcatcttagatatgaaggtaaaaccacttct 107  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||            ||||||||||||||||||           ||||||||    
T  12062374 atcacaaccattcgcttcacgctgcacagaaatttgagcgttatttcagattagagagagag-tatgcttcatcttagata-----------ccacttct 12062461  T
Q  108 aatacaacttgagggtcgacgttaatgaagagagaggatatggaaa 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  12062462 aatacaacttgagggtcgacgttaatgaagagagaggatatggaaa 12062507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 416 - 481
Target Start/End: Original strand, 12058610 - 12058675
Alignment:
Q  416 aaatatgacttttagtcccacattgctaggaaagaaacataacacatgtgaagttgttatatataa 481  Q
    ||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  12058610 aaatatggcttttagtcccatattgctagcaaagaaacataacacatgtgaagttgttatatataa 12058675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 525 - 648
Target Start/End: Original strand, 12047224 - 12047347
Alignment:
Q  525 gttggatggtttaaaaagtcaaaaatttctttagaaa-cataaccttgatcattttctttttcgatttcatattagcttgttagcactctatctcaggat 623  Q
    |||||| ||||||||| |||||||||||||||||| | |||||||||||| ||||||| ||| | ||||| |||||||||||||| |||||||||| |||    
T  12047224 gttggacggtttaaaa-gtcaaaaatttctttagacatcataaccttgattattttctgttttgttttcaaattagcttgttagctctctatctcaagat 12047322  T
Q  624 aattattatgaaaaagattatatta 648  Q
    | ||||| ||||  |||||| ||||    
T  12047323 atttattttgaagtagattaaatta 12047347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 424 - 481
Target Start/End: Original strand, 12046988 - 12047045
Alignment:
Q  424 cttttagtcccacattgctaggaaagaaacataacacatgtgaagttgttatatataa 481  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  12046988 cttttagtcccacattgctagcaaagaaaaataacacatgtgaagttgttatatataa 12047045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 424 - 486
Target Start/End: Original strand, 12066706 - 12066768
Alignment:
Q  424 cttttagtcccacattgctaggaaagaaacataacacatgtgaagttgttatatataatataa 486  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||| ||||    
T  12066706 cttttagtcccacattgctaccaaagaaacataacacatgtgaagttgttctatataagataa 12066768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 427 - 481
Target Start/End: Original strand, 12051303 - 12051357
Alignment:
Q  427 ttagtcccacattgctaggaaagaaacataacacatgtgaagttgttatatataa 481  Q
    |||||||||||||||| | ||||||||| ||||||||||||||||||||||||||    
T  12051303 ttagtcccacattgcttgcaaagaaacaaaacacatgtgaagttgttatatataa 12051357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 416 - 481
Target Start/End: Original strand, 12074261 - 12074324
Alignment:
Q  416 aaatatgacttttagtcccacattgctaggaaagaaacataacacatgtgaagttgttatatataa 481  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||  ||||||||||| |||||||    
T  12074261 aaatatggcttttagtcccatattgctaggaaagaaacataacac--gtgaagttgttctatataa 12074324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 749 - 816
Target Start/End: Complemental strand, 5573719 - 5573652
Alignment:
Q  749 tctggattcactagcttcgttagattttcttcttagaggcggaatctatgatcaagacatggttggtg 816  Q
    |||||||||  ||||||| ||||| |||||||||||||  ||||||||| ||||| ||||||||||||    
T  5573719 tctggattctgtagcttcattagactttcttcttagagatggaatctataatcaaaacatggttggtg 5573652  T

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Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 749 - 816
Target Start/End: Complemental strand, 5582994 - 5582927
Alignment:
Q  749 tctggattcactagcttcgttagattttcttcttagaggcggaatctatgatcaagacatggttggtg 816  Q
    |||||||| | ||||||| |||||||||||||||||||  ||| ||||| || |||||||||||||||    
T  5582994 tctggatttattagcttcattagattttcttcttagagatggattctataataaagacatggttggtg 5582927  T

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Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 425 - 483
Target Start/End: Complemental strand, 5570127 - 5570069
Alignment:
Q  425 ttttagtcccacattgctaggaaagaaacataacacatgtgaagttgttatatataata 483  Q
    ||||||||||||||||| || |||||||||||||| | | ||||||||| |||||||||    
T  5570127 ttttagtcccacattgccagcaaagaaacataacatacgggaagttgttctatataata 5570069  T

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Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 732 - 781
Target Start/End: Original strand, 12047371 - 12047420
Alignment:
Q  732 tgttcttggttggttattctggattcactagcttcgttagattttcttct 781  Q
    |||||||||| |||  ||||||||||||||||||| ||||||||||||||    
T  12047371 tgttcttggtgggtatttctggattcactagcttctttagattttcttct 12047420  T

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Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 135
Target Start/End: Original strand, 12077321 - 12077385
Alignment:
Q  71 tatgcttcatcttagatatgaaggtaaaaccacttctaatacaacttgagggtcgacgttaatga 135  Q
    ||||||||||  |||||||||||||||||||||||  || ||||||| |||||| || |||||||    
T  12077321 tatgcttcatagtagatatgaaggtaaaaccactttgaacacaactttagggtcaactttaatga 12077385  T

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Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 767 - 816
Target Start/End: Complemental strand, 5593468 - 5593419
Alignment:
Q  767 gttagattttcttcttagaggcggaatctatgatcaagacatggttggtg 816  Q
    |||| |||||||||||||||  |||||||||||| ||| |||||||||||    
T  5593468 gttatattttcttcttagagatggaatctatgataaagccatggttggtg 5593419  T

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Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 425 - 481
Target Start/End: Original strand, 12075674 - 12075728
Alignment:
Q  425 ttttagtcccacattgctaggaaagaaacataacacatgtgaagttgttatatataa 481  Q
    ||||||||||| |||||||| |||||||||||| ||  ||||||||||| |||||||    
T  12075674 ttttagtcccatattgctagcaaagaaacataatac--gtgaagttgttctatataa 12075728  T

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Target: chr4 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 150 - 303
Target Start/End: Complemental strand, 30353714 - 30353563
Alignment:
Q  150 gaaatcatattgaaaaagcgaacaatctcatagttaaatattgagccaattacttttatataccactaatctttatgatctccgccacnnnnnnnctcaa 249  Q
    ||||| |||||||||| | |||||||| |||||||||| ||||||||||   | |||||||| ||||| |||||||| |||| |||||       |||||    
T  30353714 gaaattatattgaaaaggtgaacaatcccatagttaaaaattgagccaa---cctttatatatcactattctttatggtctctgccacttgtctcctcaa 30353618  T
Q  250 ctttgtttcaattcaattatg-agatttctaaatatcaatttaagaatgcttatg 303  Q
    |  ||||||| ||||||| |  |||||||||||||||||||||||||| ||||||    
T  30353617 ccctgtttcagttcaattttttagatttctaaatatcaatttaagaattcttatg 30353563  T

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