View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4771-Insertion-5 (Length: 669)
Name: NF4771-Insertion-5
Description: NF4771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4771-Insertion-5 |
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Alignment Details
Target: chr4 (Bit Score: 547; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 8 - 668
Target Start/End: Complemental strand, 54087995 - 54087339
Alignment:
| Q |
8 |
aaaagctggaggtgtgcatgcgtatggaaatgggacaatgtagggagtgggggtgtcacttatgacataagtcaacttttt-ctggtggaaatttttata |
106 |
Q |
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| T |
54087995 |
aaaagctagaggtgtgcatgcgtatggaaatgggacaatgtaggaagtgggggtgtcacttgtggcacaagtcaacttttttctggtggaaatttttata |
54087896 |
T |
|
| Q |
107 |
gcagaaattaatttggatatgtgtacattatttgtcgttattgagatgagtccattagtaacagtacatgccactcacttcagcataatgtataatacat |
206 |
Q |
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| T |
54087895 |
gcagaaattaatttggatatgtgtacattatttgtcgttattgagatgagtccattagtaacagtacatgccactcacttcagcataatgtataatacat |
54087796 |
T |
|
| Q |
207 |
agtgggatatacatcattttgatacgtgtaatccaaattcaagaagaaatgctattaaggatatgtatgtttatttgcagggccactaaaacacgttaat |
306 |
Q |
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| T |
54087795 |
agtgggatatacatgattttgatacgtgtaatccaaattcaagaagaaatgctattaaggatatgtatgtttatttgcagggccactaaaacacgttaat |
54087696 |
T |
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| Q |
307 |
tcaagatgtaaaacatatgctgagatttgagaacgttatggaagagttaccaagctattttgttagaaatttatttttatctgttattattgatcttcca |
406 |
Q |
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| T |
54087695 |
tcaagatgtaaaacatatgctgagatttgagaacgttatggaagagttaccaagctattttgttagaaatttatttttatctgtaattattgatcttcca |
54087596 |
T |
|
| Q |
407 |
ttgatttataaaactaaacgttggttaactcatatgttaataacttaatatatgtcccggactatttgtgtttatannnnnnnnngattatgtaacaatt |
506 |
Q |
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| T |
54087595 |
ttgatttataaaactaaacgttggttaactcatatgttaataacttaatatatgtcccggactatttgtgtttata-----ttttgattatgtaacagtt |
54087501 |
T |
|
| Q |
507 |
gtaacccttttgtaaatggcaaatttcctcttcactttctctataagcatgtttttagatatacgttaaagaact---tgtcatgacatgcatgcttact |
603 |
Q |
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| T |
54087500 |
gtaacccttttgtaaatagcaaatttcctcttcactttct-tataagcatgtttttagatatacattaaagaacttcatgtcatgacatgcatgcttact |
54087402 |
T |
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| Q |
604 |
catcaatgcccgagaaagaatatcctacataattgtccttcaaggcgtaaactcaagtggttgaa |
668 |
Q |
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| T |
54087401 |
catcaatgcccgagaaagaatatcctacataattgtcctt-aaggcgt-aactcaagtggttgaa |
54087339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 396 - 432
Target Start/End: Complemental strand, 22382311 - 22382275
Alignment:
| Q |
396 |
ttgatcttccattgatttataaaactaaacgttggtt |
432 |
Q |
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| T |
22382311 |
ttgatcttccattgatttataaaattaaacattggtt |
22382275 |
T |
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