View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4771-Insertion-6 (Length: 584)
Name: NF4771-Insertion-6
Description: NF4771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4771-Insertion-6 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 7 - 584
Target Start/End: Complemental strand, 46453145 - 46452572
Alignment:
| Q |
7 |
aatattgaaacactcaataactgagccgggatgatctctagaaattcctcttggagctgaagagcctggagaaccacgagttgccccatctgtattagct |
106 |
Q |
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| T |
46453145 |
aatattgaaacactcaataactgagccgagatgatctctagaaattcctcttggagctgaagagcctggagaaccacgggtt-----atctgtattagct |
46453051 |
T |
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| Q |
107 |
ctaaaccagtcgattgggggagcggggcaaataatctccatgatggaaggaggggatcgagagtagcaagacactaacgtactagaattaaatggacata |
206 |
Q |
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| T |
46453050 |
ctaaaccagttgattgggggagcggggcaaataatctccatgatggaaggaggggatcgagagtagcaagacactaacgtactagaattaaatggacata |
46452951 |
T |
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| Q |
207 |
aagtacaccaaagc-tcaatacaaaactacttatatcatcaccagaccagacctagtcacatgtactagtttatcttgttttgttttggggaagacaata |
305 |
Q |
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| T |
46452950 |
aagtacaccaaagcctcaatacaaaactacttatatcatcaccagaccagacctagtcacatctactagtttatcttgttttgttttggggaagacaata |
46452851 |
T |
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| Q |
306 |
agagaataatatttatatttcgcctttagaactagctgctttgttgtataggattccaccttcatttgaggtaccgtaacactcccgttttaagtgcttt |
405 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46452850 |
agagtataatatttatatttcgcctttagaactagctgctttgttgtatagggttccaccttcatttgaggtaccgtaacactcccgttttaagtgcttt |
46452751 |
T |
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| Q |
406 |
ctaccacatttgtaacatttgagatttagatcaactacatttcggctctgattagtgcgctctgttgattcttctttaagaattgcaccaaacgcgtcac |
505 |
Q |
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| T |
46452750 |
ctaccacatttgtaacatttgagatttagatcaactacattttggctctgattagtgcgctctgttgattcttctttaagaattgcaccaaacgcgtcac |
46452651 |
T |
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| Q |
506 |
caaactagagtattaactacattgttgtttttaatgttgatgatgagttcaccacaggatctaataaactgtgaggtag |
584 |
Q |
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| T |
46452650 |
caaactagagtattaactacattgttgtttttaatgttgatgatgagttcatcataggatctaataaactatgaagtag |
46452572 |
T |
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