View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4771-Insertion-7 (Length: 548)

Name: NF4771-Insertion-7
Description: NF4771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4771-Insertion-7
NF4771-Insertion-7
[»] chr5 (5 HSPs)
chr5 (209-548)||(38065058-38065398)
chr5 (20-209)||(38064679-38064868)
chr5 (167-205)||(3136463-3136501)
chr5 (167-208)||(3136005-3136046)
chr5 (168-208)||(39148851-39148891)
[»] chr7 (2 HSPs)
chr7 (20-209)||(8464468-8464657)
chr7 (168-209)||(84459-84500)
[»] chr8 (2 HSPs)
chr8 (168-209)||(43433892-43433933)
chr8 (167-208)||(2319343-2319384)
[»] chr3 (4 HSPs)
chr3 (167-208)||(34873047-34873088)
chr3 (167-208)||(1259631-1259672)
chr3 (167-208)||(37242919-37242960)
chr3 (168-208)||(41041218-41041258)
[»] chr4 (4 HSPs)
chr4 (168-208)||(52869530-52869570)
chr4 (168-210)||(52532597-52532639)
chr4 (167-208)||(16989312-16989353)
chr4 (168-209)||(52533365-52533406)


Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 209 - 548
Target Start/End: Original strand, 38065058 - 38065398
Alignment:
Q  209 tacccaagaatactgtaagtctgtaactacccctttttagtaagaaaagtaatgctagatcaatgtctaccattgtcaattactaggtgaaagaatactg 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38065058 tacccaagaatactgtaagtctgtaactacccctttttagtaagaaaagtaatgctagatcaatgtctaccattgtcaattactaggtgaaagaatactg 38065157  T
Q  309 taaatacaacaatatacaatttctatcaaaagaggtgaaaagaacgaattttc-tttaataaagaatttcatttattatccggagacttgttaaaatgcc 407  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  38065158 taaatacaacaatatacaatttctatcaaaagagatgaaaagaacgaattttcttttaataaagaatttcatttattatccggagacttgttaaaatgcc 38065257  T
Q  408 tatgaagaattgtcatcaaggtnnnnnnntaaataatatacttcaaaagtaaccaaaacaattataaacaatgatgattccagtggctgaggctgtgatc 507  Q
    ||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38065258 tatgaagaattgtcatcaaggtaaaaaaataaataatatacttcaaaagtaaccaaaacaattataaacaatgatgattccagtggctgaggctgtgatc 38065357  T
Q  508 atcaactctcctttattgttgaaagatcatcaaacactgtt 548  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  38065358 atcaactctcctttattgttgaaagatcatcaaacactgtt 38065398  T

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Target: chr5; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 20 - 209
Target Start/End: Original strand, 38064679 - 38064868
Alignment:
Q  20 attatcaaactaaaatcaggaggttgcagttgcacagtggtgaagaatcaccaagaaaactgaagatgatgtttctctctcttcaattgccctctttttt 119  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||    
T  38064679 attatcaaactaaaatcaggaggttgcagttgcacactggtgaagaatcaccaagaaaactgaagatggtgtttctctctcctcaattgccccctttttt 38064778  T
Q  120 ctacttgtcagacaaccgtttgattaatcaaaagcaggagagagaatgtgtaaaagaaataatacagtgttggaagtgtatgataagatt 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  38064779 ctacttgtcagacaaccgtttgattaatcaaaagcaggagagagaatgtgtaaaagaaataatatagtgttgggagtgtatgataagatt 38064868  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 167 - 205
Target Start/End: Original strand, 3136463 - 3136501
Alignment:
Q  167 gtgtaaaagaaataatacagtgttggaagtgtatgataa 205  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  3136463 gtgtaaaagaaataattcagtgttggaagtgtatgataa 3136501  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 208
Target Start/End: Complemental strand, 3136046 - 3136005
Alignment:
Q  167 gtgtaaaagaaataatacagtgttggaagtgtatgataagat 208  Q
    |||||||||||||||| |||||||  ||||||||||||||||    
T  3136046 gtgtaaaagaaataatccagtgttacaagtgtatgataagat 3136005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 39148891 - 39148851
Alignment:
Q  168 tgtaaaagaaataatacagtgttggaagtgtatgataagat 208  Q
    |||||||||||||||| ||||||| |||||||| |||||||    
T  39148891 tgtaaaagaaataatatagtgttgcaagtgtataataagat 39148851  T

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Target: chr7 (Bit Score: 162; Significance: 3e-86; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 20 - 209
Target Start/End: Complemental strand, 8464657 - 8464468
Alignment:
Q  20 attatcaaactaaaatcaggaggttgcagttgcacagtggtgaagaatcaccaagaaaactgaagatgatgtttctctctcttcaattgccctctttttt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  8464657 attatcaaactaaaatcaggaggttgcagttgcacagtggtgaagaatcaccaagaaaactgaagatgatgtttctctctcctcaattgccccctttttt 8464558  T
Q  120 ctacttgtcagacaaccgtttgattaatcaaaagcaggagagagaatgtgtaaaagaaataatacagtgttggaagtgtatgataagatt 209  Q
    ||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||    
T  8464557 ctacttgtcaggcaaccgttggattaatcaaaagcaggagagataatgtgtaaaagaaataatatagtgttgggagtgtatgataagatt 8464468  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 168 - 209
Target Start/End: Complemental strand, 84500 - 84459
Alignment:
Q  168 tgtaaaagaaataatacagtgttggaagtgtatgataagatt 209  Q
    |||||||||||||||| ||||||| |||||||||||||||||    
T  84500 tgtaaaagaaataatatagtgttgcaagtgtatgataagatt 84459  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 168 - 209
Target Start/End: Complemental strand, 43433933 - 43433892
Alignment:
Q  168 tgtaaaagaaataatacagtgttggaagtgtatgataagatt 209  Q
    |||||||||||||||| |||||||||||| ||||||||||||    
T  43433933 tgtaaaagaaataatatagtgttggaagtctatgataagatt 43433892  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 208
Target Start/End: Complemental strand, 2319384 - 2319343
Alignment:
Q  167 gtgtaaaagaaataatacagtgttggaagtgtatgataagat 208  Q
    |||||||||||||||| |||||||  ||||||||||||||||    
T  2319384 gtgtaaaagaaataatccagtgttacaagtgtatgataagat 2319343  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 167 - 208
Target Start/End: Complemental strand, 34873088 - 34873047
Alignment:
Q  167 gtgtaaaagaaataatacagtgttggaagtgtatgataagat 208  Q
    ||||||||||||||||||||||||  ||||||||||||||||    
T  34873088 gtgtaaaagaaataatacagtgttacaagtgtatgataagat 34873047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 208
Target Start/End: Original strand, 1259631 - 1259672
Alignment:
Q  167 gtgtaaaagaaataatacagtgttggaagtgtatgataagat 208  Q
    |||||||||||||||| |||||||  ||||||||||||||||    
T  1259631 gtgtaaaagaaataatccagtgttacaagtgtatgataagat 1259672  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 208
Target Start/End: Original strand, 37242919 - 37242960
Alignment:
Q  167 gtgtaaaagaaataatacagtgttggaagtgtatgataagat 208  Q
    |||||||||||||||| |||||||  ||||||||||||||||    
T  37242919 gtgtaaaagaaataatccagtgttacaagtgtatgataagat 37242960  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 168 - 208
Target Start/End: Original strand, 41041218 - 41041258
Alignment:
Q  168 tgtaaaagaaataatacagtgttggaagtgtatgataagat 208  Q
    |||||||||||||||| |||| || ||||||||||||||||    
T  41041218 tgtaaaagaaataatatagtgctgcaagtgtatgataagat 41041258  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 52869570 - 52869530
Alignment:
Q  168 tgtaaaagaaataatacagtgttggaagtgtatgataagat 208  Q
    |||||||||||||||| ||||||| ||||||||||||||||    
T  52869570 tgtaaaagaaataatatagtgttgcaagtgtatgataagat 52869530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 168 - 210
Target Start/End: Complemental strand, 52532639 - 52532597
Alignment:
Q  168 tgtaaaagaaataatacagtgttggaagtgtatgataagatta 210  Q
    ||||||| ||||||| ||||||||||||| |||||||||||||    
T  52532639 tgtaaaataaataattcagtgttggaagtctatgataagatta 52532597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 208
Target Start/End: Complemental strand, 16989353 - 16989312
Alignment:
Q  167 gtgtaaaagaaataatacagtgttggaagtgtatgataagat 208  Q
    |||||||||||||||| |||||||  ||||||||||||||||    
T  16989353 gtgtaaaagaaataattcagtgttacaagtgtatgataagat 16989312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 209
Target Start/End: Original strand, 52533365 - 52533406
Alignment:
Q  168 tgtaaaagaaataatacagtgttggaagtgtatgataagatt 209  Q
    ||||||| |||||||| |||||||||||| ||||||||||||    
T  52533365 tgtaaaaaaaataatatagtgttggaagtctatgataagatt 52533406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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