View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4771-Insertion-8 (Length: 462)
Name: NF4771-Insertion-8
Description: NF4771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4771-Insertion-8 |
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Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 152 - 461
Target Start/End: Original strand, 33841773 - 33842082
Alignment:
| Q |
152 |
aaatcaaatagaaggtgtgatattaggtgagtggagttcataattagttgtctctcgttgtgtgaaatttgtgcgatctttgtatggaacatggccgatc |
251 |
Q |
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| T |
33841773 |
aaatcaaatagaaggtgtgatattaggtgagtggagttcgtaattagttgtctctcgttgtgtgaaatttgtgtgatctttgtatggaacatggcagatc |
33841872 |
T |
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| Q |
252 |
taaggataagggcgaccaagacaatcgtctttcaaaaaattgaaagaatatcatgatatgtgatcatgtaataattcagtcatacttaatgattttcaaa |
351 |
Q |
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| T |
33841873 |
taaggataagggcgaccaagacagtcgtctttaaaaaaattgaaagaatatcatgatatgtgatcatgtaataattcagtcatacttaatgattttcaaa |
33841972 |
T |
|
| Q |
352 |
aacattttcttacttgtataatttagaaaagaaaaacaagttatcgtctccactttcctccaaaatcgtcttcccaaacagaccataagtctcctatctc |
451 |
Q |
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| T |
33841973 |
aacattttcgtacttgtataatttagtaaagaaaaacaagtcatcctctccactctcctccaaaatcgtcttcccaaacagaccataagtcttctctctc |
33842072 |
T |
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| Q |
452 |
ttaagggttc |
461 |
Q |
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|||| ||||| |
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| T |
33842073 |
ttaaaggttc |
33842082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 8 - 128
Target Start/End: Original strand, 33841460 - 33841580
Alignment:
| Q |
8 |
caatctatctctaaatcaggattatgttgctaggtagattcaggtattgacagaaaaagatcgcatgtgaggaaaagagtaaagaattctatactaatct |
107 |
Q |
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| T |
33841460 |
caatctatctctaaatcacgattatgttgctaggtagattcaggtattgacagaaaaagatcgcatgtgaggaaaagagtaaagaattctatactaatct |
33841559 |
T |
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| Q |
108 |
tgataggaacttcaagaaccc |
128 |
Q |
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| T |
33841560 |
tgataggaacttcaagaaccc |
33841580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 338
Target Start/End: Original strand, 16032978 - 16033031
Alignment:
| Q |
285 |
aaaaaattgaaagaatatcatgatatgtgatcatgtaataattcagtcatactt |
338 |
Q |
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|||||||||||||||||||||||||| || |||| ||| |||||| ||| |||| |
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| T |
16032978 |
aaaaaattgaaagaatatcatgatatatggtcatataacaattcaatcacactt |
16033031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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