View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4771-Insertion-9 (Length: 429)
Name: NF4771-Insertion-9
Description: NF4771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4771-Insertion-9 |
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| [»] scaffold0440 (1 HSPs) |
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| [»] scaffold0060 (1 HSPs) |
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Alignment Details
Target: scaffold0440 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: scaffold0440
Description:
Target: scaffold0440; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 8 - 429
Target Start/End: Complemental strand, 2314 - 1888
Alignment:
| Q |
8 |
aatgttgcagtcactcaactctttaacttttccatgcaatgaagggaattagaggaggcataaggcaggacatatatgtatttatttgaaagtattctag |
107 |
Q |
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| T |
2314 |
aatgttgcagtcactcaactctttaacttttccatgcaatgaaaggaattagaggaggcataaggcaggacatatatgtatttatttgaaagtattctag |
2215 |
T |
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| Q |
108 |
ctaaaattaggatctaataagaaagaaataccgcgcacaagtcaatgcaaaaactaattactaatcaaacaattatgtaagaaagtataatagttcttac |
207 |
Q |
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| T |
2214 |
ctaaaattaggatctaataagaaagaaataccgcgcacaagtcaatgcaaaaactaattactaatcaaacaattatgtaagaaagtataatagttcttac |
2115 |
T |
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| Q |
208 |
ataattgttattattgacaaatttaatcttcagtaaactgacattaatatggattggtctcaaatgtggactgcatgttaggacctcagcttgggacaag |
307 |
Q |
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| T |
2114 |
ataattgttattattgacaaatttaatcttc-gtaaactgacattaatatggattggtctcaaatgtggactgcatgttaggacctcagcttgggacaag |
2016 |
T |
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| Q |
308 |
tttgc------atatatatcaatgacaaatggaatgtgattcataacgtgactataataaaattgtataagaagtaggatttgttctaatgtgagctgac |
401 |
Q |
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| T |
2015 |
tttgcatatatatatatatcaatgacaaatggaatgtgattcataacgtgactataataaaattgtataagaagtaggatttgttctaatgtgagctgac |
1916 |
T |
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| Q |
402 |
ttttaattttagtagactacagggtaag |
429 |
Q |
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| T |
1915 |
ttttaattttagtaaactacagggtaag |
1888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 103; Significance: 4e-51; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 147 - 345
Target Start/End: Complemental strand, 21136048 - 21135852
Alignment:
| Q |
147 |
agtcaatgcaaaaactaattactaatcaaacaattatgtaagaaagtataatagttct---tacataattgttattattgacaaatttaatcttcagtaa |
243 |
Q |
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| T |
21136048 |
agtcaatccaagaactaattactaatcaaacaattatgtaagaaagtgtcatagttctaattacataattgttattattgacaaatttaatcctctgtaa |
21135949 |
T |
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| Q |
244 |
actgacattaatatggattggtctcaaatgtggactgcatgttaggacctcagcttgggacaagtttgcatatatatcaatgacaaatggaatgtgattc |
343 |
Q |
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| T |
21135948 |
actgacattaatttggattggtctcaaaagtggactg-ttaggaggacctcaggttgggacaagtttgcatata----aatggcaaattgaatgtgattc |
21135854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 219 - 415
Target Start/End: Complemental strand, 21308466 - 21308278
Alignment:
| Q |
219 |
tattgacaaatttaatcttcagtaaactgacattaatatggattggtctcaaatgtggactgcatgttaggacctcagcttgggacaagtttgcatatat |
318 |
Q |
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| T |
21308466 |
tattgacaaatttaatcctcagtgaactaacattaatatggattggtctcaaaattggac----tgttagaacttcaggttgggacaagtttgc----ct |
21308375 |
T |
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| Q |
319 |
atcaatgacaaatggaatgtgattcataacgtgactataataaaattgtataagaagtaggatttgttctaatgtgagctgacttttaattttagta |
415 |
Q |
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| T |
21308374 |
atcaatggcaaatggaatgtgatttatgaggtgactataataaaattgtatacgaagtatgctttgttctaatgtgagctgaattttaatattagta |
21308278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 134
Target Start/End: Complemental strand, 21110580 - 21110528
Alignment:
| Q |
82 |
tatgtatttatttgaaagtattctagctaaaattaggatctaataagaaagaa |
134 |
Q |
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| T |
21110580 |
tatgaatttatttgaaagtatcatagttacaattaggatctaataagaaagaa |
21110528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 345
Target Start/End: Complemental strand, 21146415 - 21146357
Alignment:
| Q |
283 |
tgttaggacctcagcttgggacaagtttgcatatatatcaatgacaaatggaatgtgattcat |
345 |
Q |
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| T |
21146415 |
tgttagaacctctggttgggacaagtttg----tatatcaatggcaaatggaatgtgattcat |
21146357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 216
Target Start/End: Original strand, 17752 - 17883
Alignment:
| Q |
87 |
atttatttgaaagtattctagctaaaattaggatctaataagaaagaaataccgcgcacaagtcaatgcaaa-aactaattactaatcaaacaattatgt |
185 |
Q |
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| T |
17752 |
atttatttgaaggtgtcatagttacaattaggatctaataagaaagaactattgc--acaatacaatgcttagaactaattactaggcaaacaattatgt |
17849 |
T |
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| Q |
186 |
aagaaagtataatagttc---ttacataattgtt |
216 |
Q |
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| T |
17850 |
aagaaagtatcttagttctaattacataattgtt |
17883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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