View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4771_high_2 (Length: 467)
Name: NF4771_high_2
Description: NF4771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4771_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 21 - 374
Target Start/End: Complemental strand, 38064677 - 38064322
Alignment:
| Q |
21 |
acacccaccaccccacatctcatcgtttaagcttcannnnnnnn---ggtatattttcaattcaaacaaggtttttgcccttacggtctcaagtatcagt |
117 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
38064677 |
acacccaccaccccacatgtcatcgtttaagcttcatttttttttttggtatattttcaattcaaacaaggtttttgcccttaaggtctcaagtatcagt |
38064578 |
T |
|
| Q |
118 |
tctacgagtcttgtgaatatgtttagtcattgaacaattttgattatataaatttagtgagcaaatggacaaatttaatttaacataaaatttggtatta |
217 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38064577 |
tctacgggtcttgtgaatatgtttagtcattgaacaattttgattatataaatttagtgagcaaatggacaaatttaatttaacataaaatttggtatta |
38064478 |
T |
|
| Q |
218 |
tcaaacttaacaaaaacaaatctgcatcattctccttgtctacaaaaacagaagaggaatttagttaggagaaaattgtaatatgatatcaaagtgagat |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| || |||||||||||||||||||||||||||| |
|
|
| T |
38064477 |
tcaaacttaacaaaaacaaatctgcatcattctccttgtctacaaaaactgaagaggaatttacttagaag-aaattgtaatatgatatcaaagtgagat |
38064379 |
T |
|
| Q |
318 |
gactactccacatttccgtttggcactagatgggaattagaattgggatgagatgga |
374 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38064378 |
ggctactccacatttccgtttggcactagatgggaattagaattgggatgagatgga |
38064322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 138 - 373
Target Start/End: Original strand, 8466170 - 8466405
Alignment:
| Q |
138 |
gtttagtcattgaacaattttgattatataaatttagtgagcaaatggacaaatttaatttaacataaaatttggtattatcaaacttaacaaaaacaaa |
237 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8466170 |
gtttagtcattgaacaattttgtttatataaatttagtgagcaaatggacaaatttaatttaacataaaatttggtattatcaaacttaacaaaaacaaa |
8466269 |
T |
|
| Q |
238 |
tctgcatcattctccttgtctacaaaaacagaagaggaatttagttaggagaaaattgtaatatgatatcaaagtgagatgactactccacatttccgtt |
337 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
8466270 |
tctgcatcattctccttgtctacaaaaacagaagaggaatttagttagaagaaaattgtaatatgatatcaaagtgagatggctactccacatttccgtt |
8466369 |
T |
|
| Q |
338 |
tggcactagatgggaattagaattgggatgagatgg |
373 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
8466370 |
tggcactagatgggaattagaattgggatgagatgg |
8466405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 8464661 - 8464742
Alignment:
| Q |
18 |
catacacccaccaccccacatctcatcgtttaagcttca-nnnnnnnnggtatattttcaattcaaacaaggtttttgccct |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
8464661 |
catacacccaccaccccacatctcatcgtttaagcttcatttttttttggtatattttcaattcaaacaaggtttttgccct |
8464742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University