View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4771_low_4 (Length: 350)
Name: NF4771_low_4
Description: NF4771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4771_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 133 - 332
Target Start/End: Original strand, 40580015 - 40580214
Alignment:
| Q |
133 |
aaaaaataattcacttgtaatagaaaagaagagagaaactgaaaagaggatatggccttctacacataaaggcaaaagccatattcaagctttgctttat |
232 |
Q |
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| T |
40580015 |
aaaaaataattcacttgtaatagaaaagaagagagaaactgaaaagaggatatggccttctacacataaaggcaaaagccatattcaagctttgctttat |
40580114 |
T |
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| Q |
233 |
tattttttgttttctctctttcctaaagactgcaaaagcttcattgtgtggaaactttgtctccatgccaatctcatatgccactatctatctcacttgc |
332 |
Q |
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| T |
40580115 |
tattttttgttttctctctttcctaaagactgcaaaagcttcattgtgtggaaactttgtctccatgccaatctcatatgccactatctatctcacttgc |
40580214 |
T |
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Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 19 - 142
Target Start/End: Original strand, 52584123 - 52584246
Alignment:
| Q |
19 |
ttcccaataacggaaccaaaactctcacttccataagaagtagaagtagaacggttcaataataatgagttattattattagaacctgaagcaaaagttc |
118 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52584123 |
ttcccaataacagaaccaaaactctcacttccataagaagtagaagtagaacggttcaataataatgagttattattattagaacctgaagcaaaagttc |
52584222 |
T |
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| Q |
119 |
cacttccaccactgaaaaaataat |
142 |
Q |
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| T |
52584223 |
cacttccaccactgaaaaaataat |
52584246 |
T |
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