View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4771_low_6 (Length: 250)
Name: NF4771_low_6
Description: NF4771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4771_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 11 - 204
Target Start/End: Original strand, 3338164 - 3338357
Alignment:
| Q |
11 |
cagagatcacaaaaagacagtggaaagcaccgaagagttagctgaattactctgaaatctctgaaacctacctaaaattaattagtgataataatatgat |
110 |
Q |
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| T |
3338164 |
cagagatcacaaaaagacagtggaaagcaccgaagagttagctgaattactctgaaatctctgaaacctacctaaaattaattagtgataataatatgat |
3338263 |
T |
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| Q |
111 |
attaatcacaagtcattgatatatattgagaataacaactcccgtgcgtgcgcaaatactaaaacccatgcatccaaagatgccctttgtcggc |
204 |
Q |
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| T |
3338264 |
attaatcacaagtcattgatatatattgagaataacaactcccgtgcgtgcgcaaatactaaaacccatgcatccaaagatgccctttgtcggc |
3338357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 217 - 250
Target Start/End: Original strand, 3338372 - 3338405
Alignment:
| Q |
217 |
tatgctccatccaatgcactcatggtggatccca |
250 |
Q |
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| T |
3338372 |
tatgctccatccaatgcactcatggtggacccca |
3338405 |
T |
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