View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4772-Insertion-2 (Length: 345)

Name: NF4772-Insertion-2
Description: NF4772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4772-Insertion-2
NF4772-Insertion-2
[»] chr5 (7 HSPs)
chr5 (16-345)||(14308251-14308579)
chr5 (164-328)||(23940368-23940534)
chr5 (164-268)||(24005176-24005282)
chr5 (24-91)||(25614282-25614349)
chr5 (226-331)||(31262134-31262239)
chr5 (181-266)||(32429665-32429750)
chr5 (30-68)||(24005041-24005079)
[»] scaffold1089 (1 HSPs)
scaffold1089 (23-310)||(694-981)
[»] chr3 (3 HSPs)
chr3 (179-259)||(43693760-43693840)
chr3 (179-260)||(43684712-43684793)
chr3 (27-266)||(2467603-2467842)
[»] chr6 (8 HSPs)
chr6 (183-311)||(14438489-14438617)
chr6 (20-71)||(7818328-7818379)
chr6 (23-241)||(14435668-14435886)
chr6 (24-69)||(7815400-7815445)
chr6 (24-68)||(7872237-7872281)
chr6 (26-68)||(3254962-3255004)
chr6 (23-51)||(7805834-7805862)
chr6 (23-51)||(7820036-7820064)
[»] chr1 (3 HSPs)
chr1 (186-257)||(28720317-28720388)
chr1 (23-71)||(37996665-37996713)
chr1 (113-153)||(37996758-37996798)
[»] chr4 (2 HSPs)
chr4 (23-71)||(14018652-14018700)
chr4 (180-257)||(14018453-14018530)
[»] scaffold1377 (1 HSPs)
scaffold1377 (23-68)||(1418-1463)
[»] chr7 (1 HSPs)
chr7 (26-91)||(19316676-19316741)


Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 16 - 345
Target Start/End: Complemental strand, 14308579 - 14308251
Alignment:
Q  16 agcattgaaagtttaaaatagtacatgatctgaggtgtgacgaaacacattcaagagctaaacttggacatttccaatctcgggataaactcaagaacca 115  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  14308579 agcattgaaagtttaaaatagtacatgatctgaggtgtgacaaaacacattcaagagccaaacttggacatttccaatctcgggataaactcaagaacca 14308480  T
Q  116 ctatcaaagaaataaaaaataccatttattaaaatatacgaagcaaataacaagcaaacacaaatactactccacaaaccttttttatgaaaagaatttc 215  Q
    || ||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  14308479 ctgtcaaagaaataaaaa-tagcatttactaaaatatacgaagcaaataacaagcaaacacaaatactactccacaaaccttttttatgaaaaggatttc 14308381  T
Q  216 gagcctgggacaattctggagcaattctactacaccatcccagccacgaaagatggaattaaagtgtagtttaatgtgaattaagtttggaaacattgaa 315  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  14308380 aagcctgggacaattctggagcaattctactacaccatcccagccacgaaagatggaattaaattgtagtttaatgtgaattaagtttcgaaacattgaa 14308281  T
Q  316 atgcttttgaaagtatccatttctgtgtgg 345  Q
    ||||||||||||||||||||||||||||||    
T  14308280 atgcttttgaaagtatccatttctgtgtgg 14308251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 164 - 328
Target Start/End: Original strand, 23940368 - 23940534
Alignment:
Q  164 aacaagcaaacacaaatactactcc--acaaaccttttttatgaaaagaatttcgagcctgggacaattctggagcaattctactacaccatcccagcca 261  Q
    |||||||||||| | |||||||||   |||||||||  | || ||||||||||  ||| |||||||||||| |||||| ||||| |||||||||||||||    
T  23940368 aacaagcaaacaaacatactactctcaacaaaccttactaataaaaagaatttgaagcttgggacaattcttgagcaaatctaccacaccatcccagcca 23940467  T
Q  262 cgaaagatggaattaaagtgtagtttaatgtgaattaagtttggaaacattgaaatgcttttgaaag 328  Q
     |||||| |  ||||||   ||||  ||| |||||||||||| ||||||  | ||||| ||||||||    
T  23940468 tgaaagaagtgattaaaccatagtccaatatgaattaagttttgaaacacaggaatgcctttgaaag 23940534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 268
Target Start/End: Original strand, 24005176 - 24005282
Alignment:
Q  164 aacaagcaaacacaaatactactcc--acaaaccttttttatgaaaagaatttcgagcctgggacaattctggagcaattctactacaccatcccagcca 261  Q
    |||||||||||| | |||||||||   |||||||||| | || ||||||||||  ||| ||||||| ||||||||||  ||||||||||||| |||||||    
T  24005176 aacaagcaaacaaacatactactctcaacaaacctttctaataaaaagaatttgaagcttgggacagttctggagcatatctactacaccattccagcca 24005275  T
Q  262 cgaaaga 268  Q
     ||||||    
T  24005276 tgaaaga 24005282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 91
Target Start/End: Complemental strand, 25614349 - 25614282
Alignment:
Q  24 aagtttaaaatagtacatgatctgaggtgtgacgaaacacattcaagagctaaacttggacatttcca 91  Q
    |||||||||||||||||||| ||||||||  |||||| |||||||||||| ||| |||| ||||||||    
T  25614349 aagtttaaaatagtacatgacctgaggtgacacgaaatacattcaagagccaaaattgggcatttcca 25614282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 331
Target Start/End: Complemental strand, 31262239 - 31262134
Alignment:
Q  226 caattctggagcaattctactacaccatcccagccacgaaagatggaattaaagtgtagtttaatgtgaattaagtttggaaacattgaaatgcttttga 325  Q
    |||| ||||||||||||||| ||||||||||||||| ||| || |  ||  ||   |||||||||||||||||| ||| |||||| || |||| ||||||    
T  31262239 caatgctggagcaattctaccacaccatcccagccatgaatgaagtcatacaaccatagtttaatgtgaattaaattttgaaacaatggaatggttttga 31262140  T
Q  326 aagtat 331  Q
    ||||||    
T  31262139 aagtat 31262134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 266
Target Start/End: Original strand, 32429665 - 32429750
Alignment:
Q  181 actactccacaaaccttttttatgaaaagaatttcgagcctgggacaattctggagcaattctactacaccatcccagccacgaaa 266  Q
    |||||| ||||||||||| ||||||||| |||||  ||| |||||||||   |||||||||||||||  |||||||| ||||||||    
T  32429665 actacttcacaaacctttcttatgaaaaaaatttgaagcttgggacaatgtcggagcaattctactatgccatcccaaccacgaaa 32429750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 24005041 - 24005079
Alignment:
Q  30 aaaatagtacatgatctgaggtgtgacgaaacacattca 68  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  24005041 aaaatagtacatgatctgaggtgagaagaaacacattca 24005079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1089 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold1089
Description:

Target: scaffold1089; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 310
Target Start/End: Original strand, 694 - 981
Alignment:
Q  23 aaagtttaaaatagtacatgatctgaggtgtgacgaaacacattcaagagctaaacttggacatttccaatctcgggataaactcaagaaccactatcaa 122  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||| |  || |||| |||||||| ||   |||| | ||  |   ||||| ||||    
T  694 aaagtttaaaattgtacatgatctgaggtgagacgaaacacattcaagaaccgaatttggccatttccattccttggatgagctggacctccactgtcaa 793  T
Q  123 agaaataaaaaataccatttattaaaatatacgaagcaaataacaagcaaacacaaatactactccacaaaccttttttatgaaaagaatttcgagcctg 222  Q
    ||  || ||||  | ||||||| ||||||||      | | |||||||||||| | ||| ||||| |||||||||| | || |||| |||||  ||| ||    
T  794 agggatgaaaagcaacatttatcaaaatatatttgaaacagaacaagcaaacaaatatattactcaacaaacctttctaataaaaacaatttgaagcttg 893  T
Q  223 ggacaattctggagcaattctactacaccatcccagccacgaaagatggaattaaagtgtagtttaatgtgaattaagtttggaaaca 310  Q
    ||||| |  |||||||||| |||||  |||||||||||| |||||| | ||| ||| |||||||||||||||||||||||| ||||||    
T  894 ggacattgttggagcaattgtactatgccatcccagccatgaaagaagcaataaaactgtagtttaatgtgaattaagtttcgaaaca 981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 9e-24; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 179 - 259
Target Start/End: Original strand, 43693760 - 43693840
Alignment:
Q  179 atactactccacaaaccttttttatgaaaagaatttcgagcctgggacaattctggagcaattctactacaccatcccagc 259  Q
    |||||| ||||||||||||| |||||||||||||||  ||| ||||||||||||||||||||||||||| |||||||||||    
T  43693760 atactaatccacaaacctttcttatgaaaagaatttgaagcttgggacaattctggagcaattctactataccatcccagc 43693840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 179 - 260
Target Start/End: Original strand, 43684712 - 43684793
Alignment:
Q  179 atactactccacaaaccttttttatgaaaagaatttcgagcctgggacaattctggagcaattctactacaccatcccagcc 260  Q
    |||||| ||||||||||||| | |||| ||||||||| ||| ||||||||||| | ||||||||||||||||||||||||||    
T  43684712 atactaatccacaaacctttctgatgataagaatttcaagcttgggacaattcagaagcaattctactacaccatcccagcc 43684793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 266
Target Start/End: Original strand, 2467603 - 2467842
Alignment:
Q  27 tttaaaatagtacatgatctgaggtgtgacgaaacacattcaagagctaaacttggacatttccaatctcgggataaactcaagaaccactatcaaagaa 126  Q
    |||||||| ||||||||| | ||||| |||||||| ||||||||| |  |||||||||||||||| |||  || ||| ||  ||  ||||| |||||| |    
T  2467603 tttaaaattgtacatgatataaggtgagacgaaacgcattcaagaaccgaacttggacatttccattctttggctaagctggagctccactgtcaaagga 2467702  T
Q  127 ataaaaaataccatttattaaaatatacgaagcaaataacaagcaaacacaaatactactccacaaaccttttttatgaaaagaatttcgagcctgggac 226  Q
    || |||| || ||||| | |||||||| | |  | | |||||||||||| | ||| ||||| |||||||||| | || |||| |||||  ||| || |||    
T  2467703 atgaaaagtaacatttttcaaaatatatgtaaaatagaacaagcaaacaaatatattactcaacaaacctttctaataaaaacaatttgaagcttgcgac 2467802  T
Q  227 aattctggagcaattctactacaccatcccagccacgaaa 266  Q
    | |    ||||| ||||||||||| |||||||||| ||||    
T  2467803 agtggcagagcagttctactacacaatcccagccatgaaa 2467842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 183 - 311
Target Start/End: Original strand, 14438489 - 14438617
Alignment:
Q  183 tactccacaaaccttttttatgaaaagaatttcgagcctgggacaattctggagcaattctactacaccatcccagccacgaaagatggaattaaagtgt 282  Q
    ||||| ||||||||| || ||  |||||||||  ||| |||||||||  ||||| |||| |||||  |||||||||||| ||||||   ||| ||| |||    
T  14438489 tactcaacaaaccttattaatataaagaatttgaagcttgggacaatgttggagaaattgtactatgccatcccagccaggaaagaaccaataaaactgt 14438588  T
Q  283 agtttaatgtgaattaagtttggaaacat 311  Q
    ||||||||||||||||||||| |||||||    
T  14438589 agtttaatgtgaattaagttttgaaacat 14438617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 7818379 - 7818328
Alignment:
Q  20 ttgaaagtttaaaatagtacatgatctgaggtgtgacgaaacacattcaaga 71  Q
    ||||||||||||||||||||||||| ||||||  ||||||||||||||||||    
T  7818379 ttgaaagtttaaaatagtacatgatttgaggttagacgaaacacattcaaga 7818328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 23 - 241
Target Start/End: Original strand, 14435668 - 14435886
Alignment:
Q  23 aaagtttaaaatagtacatgatctgaggtgtgacgaaacacattcaagagctaaacttggacatttccaatctcgggataaactcaagaaccactatcaa 122  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||| | |  || |||| |||||||| ||   |||| | ||  |   ||||| ||||    
T  14435668 aaagtttaaaattgtacatgatctgaggtgagacgaaacacattcaataaccgaatttggccatttccattccttggatgagctgtacctccactgtcaa 14435767  T
Q  123 agaaataaaaaataccatttattaaaatatacgaagcaaataacaagcaaacacaaatactactccacaaaccttttttatgaaaagaatttcgagcctg 222  Q
    ||  || ||||  | ||||||||||||||||   |    | |||||||||||| | ||| |||||  ||||||||||| |||||||||||||  ||| ||    
T  14435768 agggatgaaaagcaacatttattaaaatatatttaaagcagaacaagcaaacaaatatattactcagcaaacctttttaatgaaaagaatttgaagcatg 14435867  T
Q  223 ggacaattctggagcaatt 241  Q
    |||||||  ||||||||||    
T  14435868 ggacaatgttggagcaatt 14435886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 7815445 - 7815400
Alignment:
Q  24 aagtttaaaatagtacatgatctgaggtgtgacgaaacacattcaa 69  Q
    ||||||||||||||||||||||||||||| || |||||||||||||    
T  7815445 aagtttaaaatagtacatgatctgaggtgagatgaaacacattcaa 7815400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 7872281 - 7872237
Alignment:
Q  24 aagtttaaaatagtacatgatctgaggtgtgacgaaacacattca 68  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||    
T  7872281 aagtttaaaatagtacatgatctaaggtgagacgaaacacattca 7872237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 68
Target Start/End: Original strand, 3254962 - 3255004
Alignment:
Q  26 gtttaaaatagtacatgatctgaggtgtgacgaaacacattca 68  Q
    ||||||||| ||||||||| ||||||||||| |||||||||||    
T  3254962 gtttaaaatggtacatgatgtgaggtgtgacaaaacacattca 3255004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 51
Target Start/End: Original strand, 7805834 - 7805862
Alignment:
Q  23 aaagtttaaaatagtacatgatctgaggt 51  Q
    |||||||||||||||||||||||||||||    
T  7805834 aaagtttaaaatagtacatgatctgaggt 7805862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 51
Target Start/End: Original strand, 7820036 - 7820064
Alignment:
Q  23 aaagtttaaaatagtacatgatctgaggt 51  Q
    |||||||||||||||||||||||||||||    
T  7820036 aaagtttaaaatagtacatgatctgaggt 7820064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 257
Target Start/End: Original strand, 28720317 - 28720388
Alignment:
Q  186 tccacaaaccttttttatgaaaagaatttcgagcctgggacaattctggagcaattctactacaccatccca 257  Q
    ||||||||||||| | ||||||| |||||  ||| ||||||||||||| | |||||||||||||||||||||    
T  28720317 tccacaaacctttctaatgaaaacaatttgaagcttgggacaattctgaaacaattctactacaccatccca 28720388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 37996665 - 37996713
Alignment:
Q  23 aaagtttaaaatagtacatgatctgaggtgtgacgaaacacattcaaga 71  Q
    |||||||||||||||||||||||| ||||| ||||||| ||| ||||||    
T  37996665 aaagtttaaaatagtacatgatcttaggtgagacgaaatacactcaaga 37996713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 153
Target Start/End: Original strand, 37996758 - 37996798
Alignment:
Q  113 ccactatcaaagaaataaaaaataccatttattaaaatata 153  Q
    ||||| |||||| ||||||||||| ||||||||||||||||    
T  37996758 ccactgtcaaaggaataaaaaataacatttattaaaatata 37996798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 14018700 - 14018652
Alignment:
Q  23 aaagtttaaaatagtacatgatctgaggtgtgacgaaacacattcaaga 71  Q
    |||||||||||||||||||||||| || || ||||||||||||||||||    
T  14018700 aaagtttaaaatagtacatgatctaagatgagacgaaacacattcaaga 14018652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 257
Target Start/End: Complemental strand, 14018530 - 14018453
Alignment:
Q  180 tactactccacaaaccttttttatgaaaagaatttcgagcctgggacaattctggagcaattctactacaccatccca 257  Q
    |||||||| |||||||||||| || |||||||||| |||||| ||| |||   |||||| |||||| |||||||||||    
T  14018530 tactactcaacaaacctttttaataaaaagaatttggagccttggagaatggcggagcagttctacaacaccatccca 14018453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1377 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1377
Description:

Target: scaffold1377; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 1418 - 1463
Alignment:
Q  23 aaagtttaaaatagtacatgatctgaggtgtgacgaaacacattca 68  Q
    |||||||||||| ||||| ||||||||||| || ||||||||||||    
T  1418 aaagtttaaaattgtacaggatctgaggtgagaggaaacacattca 1463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 91
Target Start/End: Original strand, 19316676 - 19316741
Alignment:
Q  26 gtttaaaatagtacatgatctgaggtgtgacgaaacacattcaagagctaaacttggacatttcca 91  Q
    ||||||| | ||||||||||| ||||| || ||||||||||||||| || || |||| ||||||||    
T  19316676 gtttaaagttgtacatgatctaaggtgagatgaaacacattcaagaactgaaattgggcatttcca 19316741  T

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