View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4772-Insertion-4 (Length: 336)
Name: NF4772-Insertion-4
Description: NF4772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4772-Insertion-4 |
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| [»] scaffold0004 (1 HSPs) |
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| [»] scaffold0047 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: scaffold0004 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 8 - 336
Target Start/End: Complemental strand, 354374 - 354026
Alignment:
| Q |
8 |
gattgttgactatttcattgcattaattcaacaacatgatggcaaaattgtttttgcatattttattttaattggtcttagtggattaaatgccactatc |
107 |
Q |
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| T |
354374 |
gattgttgactatttcattacattaattcaacagctttatggcaatattgtttttgcatattttattttaattggtcttaatggattcaatgccactatc |
354275 |
T |
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| Q |
108 |
tatttccatgatttt-ttgtagctgttgtacaattactaaagttttc---------------------tatatttgtcttaacgactaattttgttttaa |
185 |
Q |
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| T |
354274 |
tgttttcatgatttccttgtagccgtgggacaattactaaagttttcatttgcatgtaatgactttcctatatttgtctcaacgtctaattttgttttaa |
354175 |
T |
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| Q |
186 |
aaaggtcaaacggctatttttctcaccatgcatctcattcttctttaagtataaaaaggatgcaacggtgtacttgaaaaactacaccttgacatagaaa |
285 |
Q |
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| T |
354174 |
at-ggtcaaacggctatttt-ctctccatgcatctcattcttcattaaatataaaaaggatgcatcggtgtacttgaaaaactacaccttgacatagaaa |
354077 |
T |
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| Q |
286 |
atatttgtcatactctttctcactctcattattcatacacttgctaatata |
336 |
Q |
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| T |
354076 |
atatttgtcatactctttctcactctcattattcatacacttgctaatata |
354026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 8 - 336
Target Start/End: Original strand, 8680 - 9028
Alignment:
| Q |
8 |
gattgttgactatttcattgcattaattcaacaacatgatggcaaaattgtttttgcatattttattttaattggtcttagtggattaaatgccactatc |
107 |
Q |
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| T |
8680 |
gattgttgactatttcattacattaattcaacagctttatggcaatattgtttttgcatattttattttaattggtcttgatggattcaatgccactatc |
8779 |
T |
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| Q |
108 |
tatttccatgatttt-ttgtagctgttgtacaattactaaagttttc---------------------tatatttgtcttaacgactaattttgttttaa |
185 |
Q |
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||| |||||||| ||||||| || | |||||||||||||||||| ||||||||||| |||| |||| |||||||||| |
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| T |
8780 |
cgttttcatgatttccttgtagccgtgggacaattactaaagttttcatttgcatgtaatgactttgctatatttgtctcaacgtctaaatttgttttaa |
8879 |
T |
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| Q |
186 |
aaaggtcaaacggctatttttctcaccatgcatctcattcttctttaagtataaaaaggatgcaacggtgtacttgaaaaactacaccttgacatagaaa |
285 |
Q |
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| T |
8880 |
at-ggtcaaacggctatttt-ctctgaatgcatctcattcttcattaagtataaaaaggatgcatcggtgtacttgaaaaactacaccttaacatagaaa |
8977 |
T |
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| Q |
286 |
atatttgtcatactctttctcactctcattattcatacacttgctaatata |
336 |
Q |
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| T |
8978 |
atacttgtcatactctttctcactctcattattcatacacttgctaatata |
9028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 268 - 336
Target Start/End: Original strand, 17364718 - 17364786
Alignment:
| Q |
268 |
tacaccttgacatagaaaatatttgtcatactctttctcactctcattattcatacacttgctaatata |
336 |
Q |
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| T |
17364718 |
tacaccttgacatagaaaatatttgtcatactctttttcactctcattatttctacacttgctaatata |
17364786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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