View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4772_high_2 (Length: 412)
Name: NF4772_high_2
Description: NF4772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4772_high_2 |
 | |
|
| [»] scaffold0047 (1 HSPs) |
| | |
|
| [»] scaffold0004 (2 HSPs) |
| | |
|
| [»] scaffold0882 (1 HSPs) |
| | |
|
| [»] scaffold0766 (1 HSPs) |
| | |
|
| [»] scaffold0303 (1 HSPs) |
| | |
|
| [»] scaffold0097 (1 HSPs) |
| | |
|
| [»] scaffold0031 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0047 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 6 - 395
Target Start/End: Original strand, 8294 - 8685
Alignment:
| Q |
6 |
taatgtgaatatatgccttgacaggaatacattagttttgatgattgacaaaagaagtcctagaagagcaactttgcaaaaagcggaaaagaagattcaa |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||| |
|
|
| T |
8294 |
taatgtgaatatatgccttgacaggaatactttagttttgatgattgacaaaagaagtcctagaagaacaaagatgcaaaaagccgaaaagaagattcaa |
8393 |
T |
|
| Q |
106 |
gttatcaagtcttg-agttta--ttttatttatattaggacttttgtgtaagtagtt-aaaaagttctc-ttgaaaataaatcacacacactcacaatgg |
200 |
Q |
| |
|
| | |||||||||| | |||| |||||||| | ||||||||||| |||||||||| |||||| |||| || |||||| ||||||||| |||||||| |
|
|
| T |
8394 |
gctttcaagtcttggattttaatttttatttgttttaggacttttatgtaagtagtagaaaaagctctcattaaaaatatatcacacac--tcacaatgt |
8491 |
T |
|
| Q |
201 |
ttttcatttaaatgtgatttttcttaaaaatatttttccatgaaaagccataattaattatataaattgcaaaattaattattttcttaaaaatagtagt |
300 |
Q |
| |
|
||||||| |||| |||||||| | ||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
8492 |
ttttcatataaa-gtgattttacataaaaatatttttgcatgaaaagccataattaattatgtaaattgcataattaattattttcttaaaaatagtagt |
8590 |
T |
|
| Q |
301 |
tggccgtggttttaaaggcatactcatttatgcatcaaaattggttcaacatatcatatttttattaccgttggcactacataaaagatgattgt |
395 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
8591 |
tggccatggttttaaaggcatactcttttatgcatcaaaattggttcaacatatcatatttttattaccgttggcgttatataaaagatgattgt |
8685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 8 - 395
Target Start/End: Complemental strand, 354758 - 354369
Alignment:
| Q |
8 |
atgtgaatatatgccttgacaggaatacattagttttgatgattgacaaaagaagtcctagaagagcaactttgcaaaaagcggaaaagaagattcaagt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
354758 |
atgtgaatatatgccttgacaggaatactttagttttgatgattgacaaaagaagtcctagaagaacaaagatgcaaaaagcggaaaagaagattcaagc |
354659 |
T |
|
| Q |
108 |
tatcaagtctt-gagttta--ttttatttatattaggacttttgtgtaagtagtt-aaaaagttctc-ttgaaaataaatcacacacactcacaatggtt |
202 |
Q |
| |
|
| ||||||||| || | || |||||||| | ||||||||||| |||||||||| |||||| |||| || |||||| ||||||||| |||||||| || |
|
|
| T |
354658 |
tttcaagtcttagattctaatttttatttgttttaggacttttatgtaagtagtagaaaaagctctcgttaaaaatatatcacacac--tcacaatgttt |
354561 |
T |
|
| Q |
203 |
ttcatttaaatgtgatttttcttaaaaatatttttccatgaaaagccataattaattatataaattgcaaaattaattattttcttaaaaatagtagttg |
302 |
Q |
| |
|
||||| |||| |||||||| | ||||||||||||| ||| ||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
354560 |
ttcatataaa-gtgattttacataaaaatatttttgcatataaagccataatcaattatgtaaattgcataattaattattttcttaaaaatagtagttg |
354462 |
T |
|
| Q |
303 |
gccgtggttttaaaggcatactcatttatgcatcaaaattggttcaacatatcatatttttattaccgttggcactacataaaagatgattgt |
395 |
Q |
| |
|
||| |||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
354461 |
gccatggtcttaaaggcatactcttttatgcatcaaaattggttcatcatatcatatttttattaccgttggcattatataaaagatgattgt |
354369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 7 - 185
Target Start/End: Complemental strand, 113771 - 113591
Alignment:
| Q |
7 |
aatgtgaatatatgccttgacaggaatacattagttttgatgattgacaaaagaagtcctagaagagcaactttgcaaaaagcggaaaagaagattcaag |
106 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||||| ||||||||| |||||||||||||| || | ||||||||||||||||||||||||||| |
|
|
| T |
113771 |
aatgtgaatatatgccttgacaggaacactttagttttgataattgacaaatgaagtcctagaagaacagcgatgcaaaaagcggaaaagaagattcaag |
113672 |
T |
|
| Q |
107 |
ttatcaagtctt-gagttta-ttttatttatattaggacttttgtgtaagtagt-taaaaagttctcttgaaaataaatcac |
185 |
Q |
| |
|
| || |||||| || |||| |||||||||||||||||| ||| |||||||||| |||||| |||| |||||||||||||| |
|
|
| T |
113671 |
ctttctagtcttggattttatttttatttatattaggac-tttatgtaagtagtagaaaaagctctcatgaaaataaatcac |
113591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 125; Significance: 3e-64; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 9 - 276
Target Start/End: Original strand, 39924739 - 39925007
Alignment:
| Q |
9 |
tgtgaatatatgccttgacaggaatacattagttttgatgattgacaaaagaagtcctagaagagcaactttgcaaaaagcggaaaagaagattcaagtt |
108 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| | |
|
|
| T |
39924739 |
tgtgaatatatgccttgacaggaatactttagttttgatgattgacaaaagaagtcctagaagaacaaagatgcaaaaagcggaaaagaagattcaagct |
39924838 |
T |
|
| Q |
109 |
atcaagtcttgagttt--attttatttatattaggacttttgtgtaagtagt-taaaaagttctcttgaaaataaatcacacacactcacaatggttttc |
205 |
Q |
| |
|
|||||||||| ||| ||||||||| | |||||||| | |||| ||||| ||||||||||| | ||||||||| ||||||||||||||||||||| |
|
|
| T |
39924839 |
ttcaagtcttggattttaattttatttgttttaggactgatttgtacgtagtagaaaaagttctcattaaaataaat--cacacactcacaatggttttc |
39924936 |
T |
|
| Q |
206 |
atttaaatgtgatttttcttaaaaatatttttccatgaaaagccataattaattatataaattgcaaaatt |
276 |
Q |
| |
|
||||| |||||||||| | ||||| ||||||| ||| ||||| ||||||| ||| || |||||||| |||| |
|
|
| T |
39924937 |
atttatatgtgattttacataaaattatttttacataaaaagtcataatttattttacaaattgcataatt |
39925007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 9 - 276
Target Start/End: Complemental strand, 5027921 - 5027655
Alignment:
| Q |
9 |
tgtgaatatatgccttgacaggaatacattagttttgatgattgacaaaagaagtcctagaagagcaactttgcaaaaagcggaaaagaagattcaagtt |
108 |
Q |
| |
|
||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||| | |
|
|
| T |
5027921 |
tgtgaatatatgccttgacagga-tacgatggttttgatgattgacaaaagaagtcctagaagaacaacgatgcaaaaagcggaaaagaatattcaagct |
5027823 |
T |
|
| Q |
109 |
atcaagtcttgagttt--attttatttatattaggacttttgtgtaagtagt-taaaaagttctcttgaaaataaatcacacacactcacaatggttttc |
205 |
Q |
| |
|
|| |||||||| ||| ||||||||| ||||||||| ||| |||||||||| ||||| |||| ||||||||||| ||||||||||||||| ||||| |
|
|
| T |
5027822 |
ttctagtcttgaattttaattttatttgtattaggac-tttatgtaagtagtaccaaaagctctcatgaaaataaat--cacacactcacaatgattttc |
5027726 |
T |
|
| Q |
206 |
atttaaatgtgatttttcttaaaaatatttttccatgaaaagccataattaattatataaattgcaaaatt |
276 |
Q |
| |
|
|||||||||||||||| | | ||||||||||| |||||||| |||||| ||| || |||||||| |||| |
|
|
| T |
5027725 |
atttaaatgtgattttgcattaaaatatttttacatgaaaacttataatttattttacaaattgcataatt |
5027655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 7 - 213
Target Start/End: Original strand, 3276698 - 3276904
Alignment:
| Q |
7 |
aatgtgaatatatgccttgacaggaatacattagttttgatgattgacaaaagaagtcctagaagagcaactttgcaaaaagcggaaaagaagattcaag |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
3276698 |
aatgtgaatatatgccttgacaggaatacattagttttgatgattgacaaaagaagtcctagaagagcaacaatgcaaaaagcggaaaagaa-attcaag |
3276796 |
T |
|
| Q |
107 |
ttatcaagtcttgagttt--attttatttatattaggacttttgtgtaagtagtt-aaaaagttctcttgaaaataaatcacacacactcacaatggttt |
203 |
Q |
| |
|
||||||||||||| |||| |||||| | | |||||||||| ||||||| ||| |||||| |||| |||||||||| || ||||||||| || ||| |
|
|
| T |
3276797 |
ttatcaagtcttgggttttatttttatatgtgttaggactttattgtaagtggttaaaaaagctctcaagaaaataaat--catacactcacagtgattt |
3276894 |
T |
|
| Q |
204 |
tcatttaaat |
213 |
Q |
| |
|
|||||||||| |
|
|
| T |
3276895 |
tcatttaaat |
3276904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 9 - 213
Target Start/End: Original strand, 3273290 - 3273494
Alignment:
| Q |
9 |
tgtgaatatatgccttgacaggaatacattagttttgatgattgacaaaagaagtcctagaagagcaactttgcaaaaagcggaaaagaagattcaagtt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||| ||||||||| |
|
|
| T |
3273290 |
tgtgaatatatgccttgacaggaatacattagttttgatgattgacaaaagaagtcctagaaaagcaacaatgcaaaaagaggaaaagaa-attcaagtt |
3273388 |
T |
|
| Q |
109 |
atcaagtcttgagttt--attttatttatattaggacttttgtgtaagtagtt-aaaaagttctcttgaaaataaatcacacacactcacaatggttttc |
205 |
Q |
| |
|
||||||||||| |||| |||||| | | |||||||||| ||||||| ||| |||||| |||| |||||||||| || ||||||||| || ||||| |
|
|
| T |
3273389 |
atcaagtcttgggttttatttttatatgtgttaggactttattgtaagtggttaaaaaagctctcaagaaaataaat--catacactcacagtgattttc |
3273486 |
T |
|
| Q |
206 |
atttaaat |
213 |
Q |
| |
|
|||||||| |
|
|
| T |
3273487 |
atttaaat |
3273494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 167 - 250
Target Start/End: Complemental strand, 14309008 - 14308927
Alignment:
| Q |
167 |
tctcttgaaaataaatcacacacactcacaatggttttcatttaaatgtgatttttcttaaaaatatttttccatgaaaagcca |
250 |
Q |
| |
|
|||| |||||||||||||||||| |||||||| || |||||||||||||||||| | | ||||||||||| |||||||||||| |
|
|
| T |
14309008 |
tctcatgaaaataaatcacacac--tcacaatgattatcatttaaatgtgattttacattaaaatatttttgcatgaaaagcca |
14308927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 201 - 256
Target Start/End: Complemental strand, 34056760 - 34056705
Alignment:
| Q |
201 |
ttttcatttaaatgtgatttttcttaaaaatatttttccatgaaaagccataatta |
256 |
Q |
| |
|
||||||||||||||||||||| | | ||||| ||||| ||||||||||||||||| |
|
|
| T |
34056760 |
ttttcatttaaatgtgattttgcattaaaatgtttttgtatgaaaagccataatta |
34056705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 119; Significance: 1e-60; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 8 - 269
Target Start/End: Complemental strand, 14405597 - 14405335
Alignment:
| Q |
8 |
atgtgaatatatgccttgacaggaatacattagttttgatgattgacaaaagaagtcctagaagagcaactttgcaaaaagcggaaaagaagattcaagt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||| | ||||||||||||||||||||||||| |
|
|
| T |
14405597 |
atgtgaatatatgccttgacaggaatactttagttttgatgattgacaaaagaaatcctagaagaacaaagatacaaaaagcggaaaagaagattcaagc |
14405498 |
T |
|
| Q |
108 |
tatcaagtcttgagttt--attttatttatattaggacttttgtgtaagtagt-taaaaagttctcttgaaaataaatcacacacactcacaatggtttt |
204 |
Q |
| |
|
| |||||||||| ||| ||||||||| | |||||||| | |||||||||| ||||||||||| | ||||||||| |||||||||||||||||||| |
|
|
| T |
14405497 |
tttcaagtcttggattttaattttatttgttttaggactgatttgtaagtagtagaaaaagttctcattaaaataaat--cacacactcacaatggtttt |
14405400 |
T |
|
| Q |
205 |
catttaaatgtgatttttcttaaaaatatttttccatgaaaagccataattaattatataaattg |
269 |
Q |
| |
|
|||||| |||||||||| | ||||| ||||||| ||| ||||| ||||||| ||| || |||||| |
|
|
| T |
14405399 |
catttatatgtgattttacataaaattatttttacataaaaagtcataatttattttacaaattg |
14405335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 9 - 276
Target Start/End: Complemental strand, 40667443 - 40667174
Alignment:
| Q |
9 |
tgtgaatatatgccttgacaggaatacattagttttgatgattgacaaaagaagtcctagaagagcaactttgcaaaaagcggaaaagaagattcaagtt |
108 |
Q |
| |
|
|||||||||||| |||||| ||||||||| |||| || ||| |||||||||| | || |||| ||| ||||||||| ||||||||| ||||||| | |
|
|
| T |
40667443 |
tgtgaatatatgttttgacatgaatacattggttt-gacgatggacaaaagaaattttaaaagaacaatgatgcaaaaagtggaaaagaa-attcaagct |
40667346 |
T |
|
| Q |
109 |
atcaagtcttgagt------ttattttatttatattaggacttttgtgtaagtagttaaaaagttctcttgaaaataaatcacacacactcacaatggtt |
202 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||| | ||||| | ||||||| |||| ||||||||||||||||| ||||||| || |
|
|
| T |
40667345 |
atcaagtcttgagtcttgagtttttttatttatattaggactttattataagtggataaaaagctctcgagaaaataaatcacacac--tcacaataatt |
40667248 |
T |
|
| Q |
203 |
ttcatttaaatgtgatttttcttaaaaatatttttccatgaaaagccataattaattatataaattgcaaaatt |
276 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||| ||| ||||| || |||| ||| || |||||||| |||| |
|
|
| T |
40667247 |
ttcatttaaatgtgattttgcataaaaatatttttacataaaaagtcagaatttattttacaaattgcataatt |
40667174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0882 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: scaffold0882
Description:
Target: scaffold0882; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 9 - 276
Target Start/End: Complemental strand, 1273 - 1004
Alignment:
| Q |
9 |
tgtgaatatatgccttgacaggaatacattagttttgatgattgacaaaagaagtcctagaagagcaactttgcaaaaagcggaaaagaagattcaagtt |
108 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||| ||||||| | |
|
|
| T |
1273 |
tgtgaatatatgccttgacaggaatactttggttttgatgatggacaaaagaagtcctagacgagcaacgatgcaaaaagcggaaaagaa-attcaagct |
1175 |
T |
|
| Q |
109 |
atcaagtcttgagt-----ttattttatttatattaggacttttgtgtaagtagttaaaaagttctcttgaaaataaatcacacacactcacaatggttt |
203 |
Q |
| |
|
||||||||||| || | |||| |||||||||| ||||| ||||||| ||||||||| |||| ||||||||| ||||||||||||||||||| |
|
|
| T |
1174 |
atcaagtcttgtgtcttgagttttttgtttatattagaactttattgtaagtggttaaaaagctctcaaaaaaataaat--cacacactcacaatggttt |
1077 |
T |
|
| Q |
204 |
tcatttaaatgtgatttttcttaaaaatatttttccatgaaaagccataattaattatataaattgcaaaatt |
276 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||| ||| ||||| || |||| ||| || |||||||| |||| |
|
|
| T |
1076 |
tcatttaaatgtgattttgcataaaaatatttttacataaaaagtcagaatttattttacaaattgcataatt |
1004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0766 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: scaffold0766
Description:
Target: scaffold0766; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 9 - 276
Target Start/End: Original strand, 2130 - 2399
Alignment:
| Q |
9 |
tgtgaatatatgccttgacaggaatacattagttttgatgattgacaaaagaagtcctagaagagcaactttgcaaaaagcggaaaagaagattcaagtt |
108 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||| ||||||| | |
|
|
| T |
2130 |
tgtgaatatatgccttgacaggaatactttggttttgatgatggacaaaagaagtcctagacgagcaacgatgcaaaaagcggaaaagaa-attcaagct |
2228 |
T |
|
| Q |
109 |
atcaagtcttgagt-----ttattttatttatattaggacttttgtgtaagtagttaaaaagttctcttgaaaataaatcacacacactcacaatggttt |
203 |
Q |
| |
|
||||||||||| || | |||| |||||||||| ||||| ||||||| ||||||||| |||| ||||||||| ||||||||||||||||||| |
|
|
| T |
2229 |
atcaagtcttgtgtcttgagttttttgtttatattagaactttattgtaagtggttaaaaagctctcaaaaaaataaat--cacacactcacaatggttt |
2326 |
T |
|
| Q |
204 |
tcatttaaatgtgatttttcttaaaaatatttttccatgaaaagccataattaattatataaattgcaaaatt |
276 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||| ||| ||||| || |||| ||| || |||||||| |||| |
|
|
| T |
2327 |
tcatttaaatgtgattttgcataaaaatatttttacataaaaagtcagaatttattttacaaattgcataatt |
2399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 112; Significance: 2e-56; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 7 - 276
Target Start/End: Original strand, 14860577 - 14860842
Alignment:
| Q |
7 |
aatgtgaatatatgccttgaca-ggaatacattagttttgatgattgacaaaagaagtcctagaagagcaactttgcaaaaagcggaaaagaagattcaa |
105 |
Q |
| |
|
|||||||||||||||||||| | || |||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||| |
|
|
| T |
14860577 |
aatgtgaatatatgccttgatacgggatacggcggttttgatgattgacaaaagaagtcctagaagaacaacgaagcaaaaagcggaaaagaa-attcaa |
14860675 |
T |
|
| Q |
106 |
gttatcaagtcttgagtttattttatttatattaggacttttgtgtaagtagttaaaaagttctcttgaaaataaatcacacacactcacaatggttttc |
205 |
Q |
| |
|
| ||||||||||||||||| |||| |||||||||||||||| ||||||| ||||||||| |||| ||||||||||| ||||||||||||||| ||||| |
|
|
| T |
14860676 |
gctatcaagtcttgagttt-ttttgtttatattaggactttattgtaagtggttaaaaagctctcatgaaaataaat--cacacactcacaatgattttc |
14860772 |
T |
|
| Q |
206 |
atttaaatgtgatttttcttaaaaatatttttccatgaaaagccataattaattatataaattgcaaaatt |
276 |
Q |
| |
|
|| |||| || ||||| | | ||||||||||| ||||||||| ||||||| ||| || |||||||| |||| |
|
|
| T |
14860773 |
atctaaa-gtaattttacatgaaaatatttttacatgaaaagtcataatttattttacaaattgcataatt |
14860842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 9 - 212
Target Start/End: Original strand, 18675800 - 18676005
Alignment:
| Q |
9 |
tgtgaatatatgccttgacaggaatacattagttttgatgattgacaaaagaagtcctagaagagcaactttgcaaaaagcggaaaagaagattcaagtt |
108 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||| | |
|
|
| T |
18675800 |
tgtgaatatatgccttgacaggaatactttggttttgatgatggacaaaagaagtcctagaagagcaacgatgcaaaaagcggaaaagaa-attcaagct |
18675898 |
T |
|
| Q |
109 |
atcaagtcttgagt-----ttattttatttatattaggacttttgtgtaagtagttaaaaagttctcttgaaaataaatcacacacactcacaatggttt |
203 |
Q |
| |
|
||||| |||||||| | |||| |||||||||||||||| ||||||| ||||||||| |||| ||||||||||| ||||||||||||||| ||| |
|
|
| T |
18675899 |
atcaaatcttgagtcttgagttttttgtttatattaggactttattgtaagtggttaaaaagctctcatgaaaataaat--cacacactcacaatgattt |
18675996 |
T |
|
| Q |
204 |
tcatttaaa |
212 |
Q |
| |
|
|||| |||| |
|
|
| T |
18675997 |
tcatctaaa |
18676005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 9 - 188
Target Start/End: Original strand, 12351391 - 12351573
Alignment:
| Q |
9 |
tgtgaatatatgccttgacaggaatacattagttttgatgattgacaaaagaagtcctagaagagcaactttgcaaaaagcggaaaagaagattcaagtt |
108 |
Q |
| |
|
|||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||| | |
|
|
| T |
12351391 |
tgtgaatatatgccttgacatgaatactttgattttgatgattgacaaaagaagtcctagaagaacaaagatgcaaaaagcggaaaagaagatttaagct |
12351490 |
T |
|
| Q |
109 |
atcaagtcttgagttt--attttatttatattaggacttttgtgtaagtagt-taaaaagttctcttgaaaataaatcacaca |
188 |
Q |
| |
|
|||||||||| ||| ||||||||| | |||||| | | |||||||||| |||||| |||| ||||||||||||||||| |
|
|
| T |
12351491 |
ttcaagtcttggattttaattttatttgttttaggattgatttgtaagtagtagaaaaagctctcatgaaaataaatcacaca |
12351573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 80 - 276
Target Start/End: Original strand, 14858622 - 14858819
Alignment:
| Q |
80 |
tgcaaaaagcggaaaagaagattcaagttatcaagtcttgagttta-----ttttatttatattaggacttttgtgtaagtagttaaaaagttctcttga |
174 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||||||| | |||| |||||||||||||||| ||||||| ||||||||| |||| ||| |
|
|
| T |
14858622 |
tgcaaaaagcggaaaagaa-attcaagctatcaagtcttgagtcttgagttttttctttatattaggactttattgtaagtggttaaaaagctctcatga |
14858720 |
T |
|
| Q |
175 |
aaataaatcacacacactcacaatggttttcatttaaatgtgatttttcttaaaaatatttttccatgaaaagccataattaattatataaattgcaaaa |
274 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||| |||| || ||||| | | ||||||||||| ||||||||| ||||||| ||| || |||||||| || |
|
|
| T |
14858721 |
aaataaat--cacacactcacaatgattttcatctaaa-gtaattttacatgaaaatatttttacatgaaaagtcataatttattttacaaattgcataa |
14858817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 189
Target Start/End: Original strand, 24172909 - 24172973
Alignment:
| Q |
126 |
ttttatttatattaggacttttgtgtaagtagtt-aaaaagttctcttgaaaataaatcacacac |
189 |
Q |
| |
|
|||||||| |||||| |||||| ||||| ||||| ||||| ||||| | |||||||||||||||| |
|
|
| T |
24172909 |
ttttatttgtattagaacttttatgtaattagttgaaaaaattctcattaaaataaatcacacac |
24172973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 261
Target Start/End: Original strand, 32983734 - 32983809
Alignment:
| Q |
185 |
cacacactcacaatggttttcatttaaatgtgatttttcttaaaaatatttttccatgaaaagccataattaattat |
261 |
Q |
| |
|
|||||||||||| || ||||||| || | |||||||| | | ||| |||||||||||||||| |||||||| ||||| |
|
|
| T |
32983734 |
cacacactcacattgattttcatatata-gtgattttacattaaattatttttccatgaaaacccataatttattat |
32983809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0303 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: scaffold0303
Description:
Target: scaffold0303; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 7 - 276
Target Start/End: Original strand, 20382 - 20650
Alignment:
| Q |
7 |
aatgtgaatatatgccttgacaggaatacattagttttgatgattgacaaaagaagtcctagaagagcaactttgcaaaaagcggaaaagaagattcaag |
106 |
Q |
| |
|
||||| ||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||| |
|
|
| T |
20382 |
aatgtcaatatatgccttgacagga-tacgatggttttgatgattgacaaaagaagtcctagaagaacaacgatgcaaaaagcggaaaagaatattcaag |
20480 |
T |
|
| Q |
107 |
ttatcaagtcttgagttt--attttatttatattaggacttttgtgtaagtagt-taaaaagttctcttgaaaataaatcacacacactcacaatggttt |
203 |
Q |
| |
|
| || |||||||| ||| ||||||||| ||||||||| ||| |||||||||| ||||| |||| ||||||||||| ||||||||||||||| ||| |
|
|
| T |
20481 |
ctttctagtcttgaattttaattttatttgtattaggac-tttatgtaagtagtaccaaaagctctcatgaaaataaat--cacacactcacaatgattt |
20577 |
T |
|
| Q |
204 |
tcatttaaatgtgatttttcttaaaaatatttttccatgaaaagccataattaattatataaattgcaaaatt |
276 |
Q |
| |
|
|||||||||||||||||| | ||||||||||| |||||||| |||||| ||| || |||||||| |||| |
|
|
| T |
20578 |
tcatttaaatgtgattttgaattaaaatatttttacatgaaaaattataatttattttacaaattgcataatt |
20650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 4e-51; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 8 - 213
Target Start/End: Original strand, 16850451 - 16850656
Alignment:
| Q |
8 |
atgtgaatatatgccttgacaggaatacattagttttgatgattgacaaaagaagtcctagaagagcaactttgcaaaaagcggaaaagaagattcaagt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
16850451 |
atgtgaatatatgccttgacaggaatacattagttttgatgattgacaaaagaagtcctagaagagcaacaatgcaaaaagcggaaaagaa-attcaagt |
16850549 |
T |
|
| Q |
108 |
tatcaagtcttgagttt--attttatttatattaggacttttgtgtaagtagtt-aaaaagttctcttgaaaataaatcacacacactcacaatggtttt |
204 |
Q |
| |
|
|||||||||||| |||| |||||| | | |||||||||| ||||||| ||| |||||| |||| |||||||||| || |||||| || || |||| |
|
|
| T |
16850550 |
tatcaagtcttgggttttatttttatatgtgttaggactttattgtaagtggttaaaaaagctctcaagaaaataaat--catacactcccagtgatttt |
16850647 |
T |
|
| Q |
205 |
catttaaat |
213 |
Q |
| |
|
||||||||| |
|
|
| T |
16850648 |
catttaaat |
16850656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 9 - 261
Target Start/End: Original strand, 21197510 - 21197763
Alignment:
| Q |
9 |
tgtgaatatatgccttgacaggaatacattagttttgatgattgacaaaagaagtcctagaagagcaactttgcaaaaagcggaaaagaagattcaagtt |
108 |
Q |
| |
|
||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||| | |
|
|
| T |
21197510 |
tgtgaatatatgccttgacaggattacaatggttttgatgattgacaaaagaagtcctagaagaacaaagatgcaaaaagcggaaaagaatattcaagct |
21197609 |
T |
|
| Q |
109 |
atcaagtctt-gagttta-ttttatttatattaggacttttgtgtaagtagttaaaaagttctcttgaaaataaatcacacacactcacaatggttttca |
206 |
Q |
| |
|
|| ||||| || |||| |||||||||||||| || ||| ||||||| |||||||| |||| |||||||||| |||||||||||||| | |||| |
|
|
| T |
21197610 |
ttcttgtcttggattttatttttatttatattacgaatttattgtaagtggttaaaaatctctcaagaaaataaat--cacacactcacaatattcttca |
21197707 |
T |
|
| Q |
207 |
tttaaatgtgatttttcttaaaaatatttttccatg-aaaagccataattaattat |
261 |
Q |
| |
|
|||||||||||| | | ||||||||||| |||| ||||||||||||| ||||| |
|
|
| T |
21197708 |
aacaaatgtgattttgcattaaaatatttttgcatgaaaaagccataattgattat |
21197763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 4e-45; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 7 - 261
Target Start/End: Complemental strand, 8595637 - 8595386
Alignment:
| Q |
7 |
aatgtgaatatatgccttgacaggaatacattagttttgatgattgacaaaagaagtcctagaagagcaactttgcaaaaagcggaaaagaagattcaag |
106 |
Q |
| |
|
||||||||||| |||||||||| ||||| | | ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
8595637 |
aatgtgaatatctgccttgacatgaatagaatggttttgatgattgacaaaagaagtcctagaagatcaaaaatgcaaaaagcggaaaagaagattcaag |
8595538 |
T |
|
| Q |
107 |
ttatcaagtctt-gagttta-ttttatttatattaggacttttgtgtaagtagt-taaaaagttctcttgaaaataaatcacacacactcacaatggttt |
203 |
Q |
| |
|
||||||||| || |||| |||||||| | |||||||| || |||||||||| |||||| |||| | ||||||||||||||| | ||||||||| |
|
|
| T |
8595537 |
ccttcaagtcttggattttatttttatttgttttaggactatt-tgtaagtagtagaaaaagctctcattaaaataaatcacaca----ctcaatggttt |
8595443 |
T |
|
| Q |
204 |
tcatttaaatgtgatttttcttaaaaatatttttccatgaaaagccataattaattat |
261 |
Q |
| |
|
| ||||||| |||||||| | | ||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
8595442 |
ttatttaaaagtgattttgcatgaaaatattttt-catgaaaagccataatttattat |
8595386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 8 - 118
Target Start/End: Complemental strand, 18070184 - 18070075
Alignment:
| Q |
8 |
atgtgaatatatgccttgacaggaatacattagttttgatgattgacaaaagaagtcctagaagagcaactttgcaaaaagcggaaaagaagattcaagt |
107 |
Q |
| |
|
||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||| ||| || |||| ||||||||||| ||||||| |
|
|
| T |
18070184 |
atgtgaatatatgccttgataggaatactttggttttgatgattgacaaaagaagtcctagaagaacaaagatgtaaaaggcggaaaagaa-attcaagc |
18070086 |
T |
|
| Q |
108 |
tatcaagtctt |
118 |
Q |
| |
|
||||||||||| |
|
|
| T |
18070085 |
tatcaagtctt |
18070075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 7 - 262
Target Start/End: Original strand, 8826122 - 8826382
Alignment:
| Q |
7 |
aatgtgaatatatgccttgacaggaatacattagttttgatgattgacaaaagaagtcctagaagagcaactttgcaaaaagcggaaaagaag----att |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| || ||||||||| ||||||||| ||| |
|
|
| T |
8826122 |
aatgtgaatatatgccttgacaggaatacattggttttgatgattgacaaaagaagtgctagaagaaaaataatgcaaaaagtagaaaagaagattaatt |
8826221 |
T |
|
| Q |
103 |
caagttatcaagtcttgagttt--attttatttatattaggacttttgtgtaagtagtt--aaaaagttctcttgaaaataaatcacacacactcacaat |
198 |
Q |
| |
|
||| | ||||||||| |||| |||||||| ||||| ||||||| |||| || || ||||| | |||||||||||||| ||||| ||||||| |
|
|
| T |
8826222 |
caaactttcaagtcttaggttttagttttatttgtattaagacttttttgtacgtgattaaaaaaacctttcttgaaaataaat--cacaccgtcacaat |
8826319 |
T |
|
| Q |
199 |
ggttttcatttaaatgtgatttttcttaaaaatatttttccatgaaaagccataattaattata |
262 |
Q |
| |
|
| ||||||| |||| || ||||||||| ||| | ||||| |||||||| | |||||| |||||| |
|
|
| T |
8826320 |
gattttcatataaa-gtaatttttcttgaaactttttttgcatgaaaaactataatttattata |
8826382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 45 - 154
Target Start/End: Original strand, 15889623 - 15889734
Alignment:
| Q |
45 |
gatgattgacaaaagaagtcctagaagagcaactttgcaaaaagcggaaaagaagattcaagttatcaagtctt-gagttta-ttttatttatattagga |
142 |
Q |
| |
|
||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||| | | || |||||| || |||| |||||||| |||||||| |
|
|
| T |
15889623 |
gatgattgacaaaagaagtcctagatgaacaaagatgcaaaaagcggaaaagaagattcaggctttctagtcttcgattttatttttatttgtattagga |
15889722 |
T |
|
| Q |
143 |
cttttgtgtaag |
154 |
Q |
| |
|
||||| |||||| |
|
|
| T |
15889723 |
cttttatgtaag |
15889734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 277
Target Start/End: Complemental strand, 18070004 - 18069887
Alignment:
| Q |
157 |
gttaaaaagttctcttgaaaataaatcacacacactcacaatggttttcatttaaatgtgatttttcttaaaaatatttttccatgaaaagccataatta |
256 |
Q |
| |
|
||||||||| |||| ||||||||||| |||| ||||||||| ||||||| |||| ||||||| | | ||||||||||| | ||||||||||| || |
|
|
| T |
18070004 |
gttaaaaagctctcatgaaaataaat--cacatactcacaatatttttcatataaacatgattttgcattaaaatattttt-cttgaaaagccatttttt |
18069908 |
T |
|
| Q |
257 |
attatataaattgcaaaatta |
277 |
Q |
| |
|
||||| |||||||| ||||| |
|
|
| T |
18069907 |
attatgaaaattgcataatta |
18069887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 1907506 - 1907550
Alignment:
| Q |
80 |
tgcaaaaagcggaaaagaagattcaagttatcaagtcttgagttt |
124 |
Q |
| |
|
||||||||| ||||||||||||||||| | ||||||| ||||||| |
|
|
| T |
1907506 |
tgcaaaaagtggaaaagaagattcaagctttcaagtcctgagttt |
1907550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0097
Description:
Target: scaffold0097; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 5 - 246
Target Start/End: Complemental strand, 32141 - 31902
Alignment:
| Q |
5 |
ttaatgtgaatatatgccttgacaggaatacattagttttgatgattgacaaaagaagtcctagaagagcaactttgcaaaaagcggaaaagaagattca |
104 |
Q |
| |
|
||||||||||||||||||||||||||| |||| | |||||||||||||||||| |||||||||||||| |||| |||| |||||||||||||| ||||| |
|
|
| T |
32141 |
ttaatgtgaatatatgccttgacaggattacaatggttttgatgattgacaaatgaagtcctagaagaacaacgatgcataaagcggaaaagaatattca |
32042 |
T |
|
| Q |
105 |
agttatcaagtctt-gagtttattttatttatattaggacttttgtgtaagtagt-taaaaagttctcttgaaaataaatcacacacactcacaatggtt |
202 |
Q |
| |
|
|| | || |||||| || |||||||| | | ||||||||| ||| ||||| |||| |||||| |||| |||||||| || |||||||||||| || || |
|
|
| T |
32041 |
agctttctagtcttggattttatttt-tatttattaggac-tttatgtaaatagtagaaaaagctctcatgaaaatacat--cacacactcacattgatt |
31946 |
T |
|
| Q |
203 |
ttcatttaaatgtgatttttcttaaaaatatttttccatgaaaa |
246 |
Q |
| |
|
|| ||||||| || ||||| | | ||||| ||||| |||||||| |
|
|
| T |
31945 |
tttatttaaaagtaattttgcatgaaaatgtttttgcatgaaaa |
31902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 9 - 189
Target Start/End: Complemental strand, 90147 - 89961
Alignment:
| Q |
9 |
tgtgaatatatgccttgacaggaatacattagttttgatgattgacaaaagaagtcctagaagagcaactttgcaaaaagcggaaaagaagattcaagtt |
108 |
Q |
| |
|
||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||| | |
|
|
| T |
90147 |
tgtgaatatatgccttgacagga-tacgatggttttgatgattgacaaaagaagtcctagaagaacaacgatgcaaaaagcggaaaagaa-attcaaact |
90050 |
T |
|
| Q |
109 |
atcaagtcttgagt-----ttattttatttatat---taggacttttgtgtaagtagttaaaaagttctcttgaaaataaatcacacac |
189 |
Q |
| |
|
|||||||||||||| | |||| ||||||| ||||||||| ||||||| ||||||||| |||| ||||||||||||||||| |
|
|
| T |
90049 |
atcaagtcttgagtgttgagttttttgtttatattagtaggactttattgtaagtggttaaaaagctctcaagaaaataaatcacacac |
89961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 9 - 213
Target Start/End: Original strand, 39037591 - 39037791
Alignment:
| Q |
9 |
tgtgaatatatgccttgacaggaatacattagttttgatgattgacaaaagaagtcctagaagagcaactttgcaaaaagcggaaaagaagattcaagtt |
108 |
Q |
| |
|
||||||||||||||||||||||| ||| | |||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
39037591 |
tgtgaatatatgccttgacagga-tacgatgattttgatgattgacaaaataagtcttagaagagcaa---tgcaaaaagcggaaaagaa-attcaagtt |
39037685 |
T |
|
| Q |
109 |
atcaagtctt-gagtttattttatttatattaggacttttgtgtaagtagtt---aaaaagttctcttgaaaataaatcacacacactcacaatggtttt |
204 |
Q |
| |
|
|||||||||| || |||||||| | | | |||||||||| | ||||| ||| |||||| |||| |||||||||| || |||||||||||| |||| |
|
|
| T |
39037686 |
atcaagtcttggattttatttt-tatgtgttaggactttattttaagtggttaaaaaaaagctctcaagaaaataaat--catacactcacaatgatttt |
39037782 |
T |
|
| Q |
205 |
catttaaat |
213 |
Q |
| |
|
||||||||| |
|
|
| T |
39037783 |
catttaaat |
39037791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 11 - 165
Target Start/End: Original strand, 26794776 - 26794931
Alignment:
| Q |
11 |
tgaatatatgccttgacaggaatacattagttttgatgattgacaaaagaagtcctagaagagcaactttgcaaaaagcggaaaagaagattcaagttat |
110 |
Q |
| |
|
||||||||||||||||| | | ||| |||||||| || |||||||||||||||| ||||||| |||| |||| ||||| ||||||| ||||||| || |
|
|
| T |
26794776 |
tgaatatatgccttgactgaagtactttagttttaataattgacaaaagaagtcttagaagaacaacgatgcagtaagcgaaaaagaa-attcaagctac |
26794874 |
T |
|
| Q |
111 |
caagtcttgagtttattttatttatattaggac--ttttgtgtaagtagttaaaaag |
165 |
Q |
| |
|
| |||||||| ||| | |||||| |||||| || |||| ||||||| ||||||||| |
|
|
| T |
26794875 |
cgagtcttgattttctattatttgtattagaacttttttttgtaagtggttaaaaag |
26794931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 201 - 256
Target Start/End: Complemental strand, 25424155 - 25424100
Alignment:
| Q |
201 |
ttttcatttaaatgtgatttttcttaaaaatatttttccatgaaaagccataatta |
256 |
Q |
| |
|
||||||||||||||||||||| | | ||||| ||||| ||||||||||||||||| |
|
|
| T |
25424155 |
ttttcatttaaatgtgattttgcattaaaatgtttttgtatgaaaagccataatta |
25424100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 189
Target Start/End: Complemental strand, 2997180 - 2997105
Alignment:
| Q |
112 |
aagtcttgagtttattttatttatattaggacttttgtgtaagtagttaaaaagttctcttgaaaataaatcacacac |
189 |
Q |
| |
|
||||||||||||| | |||||| ||||||||| || ||||||| ||||||| |||| |||||||||||||||||| |
|
|
| T |
2997180 |
aagtcttgagtttttattatttgtattaggacattgttgtaagtggttaaaa--ctctcatgaaaataaatcacacac |
2997105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 189
Target Start/End: Complemental strand, 17983436 - 17983361
Alignment:
| Q |
112 |
aagtcttgagtttattttatttatattaggacttttgtgtaagtagttaaaaagttctcttgaaaataaatcacacac |
189 |
Q |
| |
|
||||||||||||| | |||||| ||||||||| || ||||||| ||||||| |||| |||||||||||||||||| |
|
|
| T |
17983436 |
aagtcttgagtttttattatttgtattaggacattgttgtaagtggttaaaa--ctctcatgaaaataaatcacacac |
17983361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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