View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4772_high_5 (Length: 390)
Name: NF4772_high_5
Description: NF4772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4772_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 40106547 - 40106926
Alignment:
| Q |
1 |
tggttttccaaaataaccaaataaagtcttctgatatgatattatgctgaatagattttttaggtaacactctcttacccttgtttgtatgtgctatgaa |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40106547 |
tggttttccaaaataacaaaataaagtcttctgatatgatattatgctgaatagattttttaggtaacactctcttacccttgtttgtatgtgctatgaa |
40106646 |
T |
|
| Q |
101 |
tgatatacatatcaaggaaaaggcgaatgaaaaattgatcttatgtttggaatagctgtgatttgnnnnnnnnnnnngctgcaggtcggaacggttgctt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
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| T |
40106647 |
tgatatacatatcaaggaaaaggcgaatgaaaaattgatcttatgtttggaatagctgtgatttgttttttctttttgctgcaggtcgggacggttgctt |
40106746 |
T |
|
| Q |
201 |
ttgtgtctctatcagggctgcttgtatttatgcttttctttctgaccgcgaccgtaaatgccattgttatatcgcttctgatatcattagctgcagctgg |
300 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40106747 |
ttgtgtctctatcaggactgcttgtatttatgcttttctttctgaccgcgaccgtaaatgccattgttatatcgcttctgatatcattagctgcagctgg |
40106846 |
T |
|
| Q |
301 |
agggttcttggctcttttctttgcttgtgctacttctatatacattggagcactctcaatagccatatttgtgatctctg |
380 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40106847 |
agggttcttggctattttctttgcttgtgctacttctatatacattggagcactctcaatagccatatttgtgatctctg |
40106926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 269 - 380
Target Start/End: Original strand, 26100655 - 26100766
Alignment:
| Q |
269 |
atatcgcttctgatatcattagctgcagctggagggttcttggctcttttctttgcttgtgctacttctatatacattggagcactctcaatagccatat |
368 |
Q |
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||||||||||||||||||||||| ||| |||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
26100655 |
atatcgcttctgatatcattagccgcaactggagggttctcggctcttttctttgtttgtgctactgctatatacattggagcactctcatcagccatat |
26100754 |
T |
|
| Q |
369 |
ttgtgatctctg |
380 |
Q |
| |
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||||||| |||| |
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| T |
26100755 |
ttgtgatttctg |
26100766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 307 - 380
Target Start/End: Complemental strand, 20595457 - 20595384
Alignment:
| Q |
307 |
cttggctcttttctttgcttgtgctacttctatatacattggagcactctcaatagccatatttgtgatctctg |
380 |
Q |
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|
|||||||||||||||||||||| ||||| ||||||||||||||||| |||||| | |||||||||||||||||| |
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| T |
20595457 |
cttggctcttttctttgcttgttctactgctatatacattggagcattctcaacaaccatatttgtgatctctg |
20595384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 200 - 267
Target Start/End: Complemental strand, 36085448 - 36085381
Alignment:
| Q |
200 |
tttgtgtctctatcagggctgcttgtatttatgcttttctttctgaccgcgaccgtaaatgccattgt |
267 |
Q |
| |
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|||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
36085448 |
tttgtgtctctaacaggattgcttgtatttatgcttttctttctgaccgcgaccgtaaacgccattgt |
36085381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 1315332 - 1315376
Alignment:
| Q |
1 |
tggttttccaaaataaccaaataaagtcttctgatatgatattat |
45 |
Q |
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||||||||||||||||| ||||||||| |||| |||||||||||| |
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| T |
1315332 |
tggttttccaaaataacaaaataaagttttcttatatgatattat |
1315376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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