View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4772_high_6 (Length: 285)

Name: NF4772_high_6
Description: NF4772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4772_high_6
NF4772_high_6
[»] chr2 (10 HSPs)
chr2 (160-275)||(24920419-24920534)
chr2 (4-100)||(24920594-24920690)
chr2 (4-100)||(22642410-22642506)
chr2 (4-100)||(23196846-23196942)
chr2 (160-271)||(23197002-23197113)
chr2 (172-275)||(22642235-22642338)
chr2 (172-275)||(23622618-23622721)
chr2 (4-100)||(23622450-23622546)
chr2 (172-271)||(23810168-23810267)
chr2 (4-94)||(23810000-23810090)
[»] chr4 (6 HSPs)
chr4 (160-275)||(14743125-14743240)
chr4 (1-100)||(14742966-14743065)
chr4 (1-100)||(14563230-14563329)
chr4 (1-100)||(13285365-13285464)
chr4 (192-275)||(13285556-13285639)
chr4 (172-256)||(14563401-14563485)
[»] scaffold0026 (2 HSPs)
scaffold0026 (4-100)||(128646-128742)
scaffold0026 (172-275)||(135214-135317)
[»] scaffold0023 (6 HSPs)
scaffold0023 (1-100)||(68240-68339)
scaffold0023 (1-100)||(77418-77517)
scaffold0023 (160-275)||(7418-7533)
scaffold0023 (161-275)||(68065-68179)
scaffold0023 (161-275)||(77243-77357)
scaffold0023 (1-100)||(7593-7692)
[»] chr8 (5 HSPs)
chr8 (1-100)||(22339582-22339681)
chr8 (160-275)||(22339741-22339856)
chr8 (160-275)||(1728903-1729018)
chr8 (4-88)||(1729090-1729174)
chr8 (160-220)||(22461031-22461091)
[»] scaffold0241 (3 HSPs)
scaffold0241 (1-100)||(18808-18907)
scaffold0241 (160-237)||(18671-18748)
scaffold0241 (229-275)||(15374-15420)
[»] scaffold0001 (4 HSPs)
scaffold0001 (1-100)||(122773-122872)
scaffold0001 (160-275)||(122932-123047)
scaffold0001 (160-275)||(94910-95025)
scaffold0001 (4-100)||(95084-95180)
[»] chr1 (8 HSPs)
chr1 (1-100)||(22800782-22800881)
chr1 (160-275)||(22800940-22801055)
chr1 (160-274)||(21297857-21297971)
chr1 (172-274)||(22690394-22690496)
chr1 (4-100)||(21298031-21298127)
chr1 (4-100)||(41376389-41376485)
chr1 (160-275)||(41376545-41376660)
chr1 (1-100)||(22690223-22690322)
[»] scaffold0040 (2 HSPs)
scaffold0040 (1-97)||(35075-35171)
scaffold0040 (172-275)||(34897-35000)
[»] scaffold1900 (2 HSPs)
scaffold1900 (160-275)||(567-682)
scaffold1900 (24-100)||(431-507)
[»] chr7 (7 HSPs)
chr7 (4-100)||(18167624-18167720)
chr7 (160-275)||(18167780-18167895)
chr7 (160-271)||(14338804-14338915)
chr7 (165-268)||(14163336-14163439)
chr7 (3-78)||(14163178-14163253)
chr7 (46-99)||(14338690-14338743)
chr7 (160-216)||(18463491-18463547)
[»] scaffold0016 (2 HSPs)
scaffold0016 (1-100)||(128532-128631)
scaffold0016 (160-275)||(128691-128806)
[»] chr6 (2 HSPs)
chr6 (1-100)||(19031168-19031267)
chr6 (160-275)||(19031327-19031442)
[»] chr5 (1 HSPs)
chr5 (1-80)||(21514679-21514758)
[»] chr3 (13 HSPs)
chr3 (1-100)||(10157014-10157113)
chr3 (1-100)||(14689431-14689530)
chr3 (160-274)||(12028552-12028666)
chr3 (1-100)||(7361434-7361533)
chr3 (160-275)||(7361593-7361708)
chr3 (160-275)||(10156839-10156954)
chr3 (160-275)||(14689590-14689705)
chr3 (1-100)||(10786261-10786360)
chr3 (1-100)||(12028393-12028492)
chr3 (1-100)||(13033224-13033323)
chr3 (160-274)||(13033050-13033164)
chr3 (160-275)||(10786087-10786201)
chr3 (4-85)||(138510-138591)
[»] scaffold0897 (2 HSPs)
scaffold0897 (1-100)||(285-384)
scaffold0897 (160-275)||(445-560)
[»] scaffold0046 (2 HSPs)
scaffold0046 (174-275)||(56757-56858)
scaffold0046 (1-100)||(56932-57031)
[»] scaffold0022 (2 HSPs)
scaffold0022 (3-100)||(27708-27805)
scaffold0022 (160-275)||(27533-27648)
[»] scaffold0304 (2 HSPs)
scaffold0304 (1-100)||(19024-19123)
scaffold0304 (172-275)||(19195-19298)
[»] scaffold0303 (1 HSPs)
scaffold0303 (172-275)||(14431-14534)
[»] scaffold0051 (2 HSPs)
scaffold0051 (160-275)||(73357-73472)
scaffold0051 (4-70)||(73550-73616)
[»] scaffold0064 (2 HSPs)
scaffold0064 (4-100)||(33647-33743)
scaffold0064 (172-275)||(33815-33918)
[»] scaffold0107 (5 HSPs)
scaffold0107 (160-275)||(16320-16435)
scaffold0107 (160-275)||(22932-23047)
scaffold0107 (160-275)||(8064-8179)
scaffold0107 (4-95)||(8244-8335)
scaffold0107 (4-100)||(23107-23203)
[»] scaffold0108 (2 HSPs)
scaffold0108 (1-98)||(36314-36411)
scaffold0108 (172-275)||(36137-36240)
[»] scaffold0239 (2 HSPs)
scaffold0239 (160-274)||(25860-25974)
scaffold0239 (1-100)||(25701-25800)
[»] scaffold0100 (1 HSPs)
scaffold0100 (4-100)||(3042-3138)
[»] scaffold0013 (3 HSPs)
scaffold0013 (162-274)||(113387-113499)
scaffold0013 (1-73)||(109297-109369)
scaffold0013 (162-274)||(152703-152815)


Alignment Details
Target: chr2 (Bit Score: 108; Significance: 3e-54; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 160 - 275
Target Start/End: Complemental strand, 24920534 - 24920419
Alignment:
Q  160 cttcaacttgatcatttgcttgtgcataatagggtgtcgaagttagcaatttgaatcctatgtcttcggcaaactttgccatctttcgaccagtgaacac 259  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  24920534 cttcaacttgaccatttgcttgtgcataatagggtgtcgaagttagcaatttgaatcctatgtcttcggcaaactttgccatctttcgactagtgaacac 24920435  T
Q  260 ggatccttggtctgtg 275  Q
    ||||||||||||||||    
T  24920434 ggatccttggtctgtg 24920419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 4 - 100
Target Start/End: Complemental strand, 24920690 - 24920594
Alignment:
Q  4 catcatgaccaaatgtcagcctaaaaggtgtggtatttgtcgattctttgggaaatgttcgacatgcccacaaagcttcgcctaaaacttcaggcca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  24920690 catcatgaccaaatgtcagcctaaaaggtgtggtatttgtcgattctttgggagatgttcgacatgcccacaaagcttcgcctaaaacttcaggcca 24920594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 4 - 100
Target Start/End: Complemental strand, 22642506 - 22642410
Alignment:
Q  4 catcatgaccaaatgtcagcctaaaaggtgtggtatttgtcgattctttgggaaatgttcgacatgcccacaaagcttcgcctaaaacttcaggcca 100  Q
    |||||||||| ||||||| |||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  22642506 catcatgaccgaatgtcaacctaaaaggtgtagtgtttgtcgattctttgggagatgttcgacatgcccacaaagcttcgcctaaaatttcaggcca 22642410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 23196846 - 23196942
Alignment:
Q  4 catcatgaccaaatgtcagcctaaaaggtgtggtatttgtcgattctttgggaaatgttcgacatgcccacaaagcttcgcctaaaacttcaggcca 100  Q
    |||||||||||||||| |||||||||||||| || |||||||||||||||||| |||||||||||||||||||||| |||||||| | |||||||||    
T  23196846 catcatgaccaaatgttagcctaaaaggtgtagtgtttgtcgattctttgggagatgttcgacatgcccacaaagcctcgcctaacatttcaggcca 23196942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 160 - 271
Target Start/End: Original strand, 23197002 - 23197113
Alignment:
Q  160 cttcaacttgatcatttgcttgtgcataatagggtgtcgaagttagcaatttgaatcctatgtcttcggcaaactttgccatctttcgaccagtgaacac 259  Q
    ||||||| ||| |||| ||||| |||||||| |||||||||||||| ||||| || ||| |||||||||||||||| |||||||||||||||||||| ||    
T  23197002 cttcaacctgaccattcgcttgcgcataatatggtgtcgaagttagtaatttaaagcctgtgtcttcggcaaacttcgccatctttcgaccagtgaatac 23197101  T
Q  260 ggatccttggtc 271  Q
    ||||||||||||    
T  23197102 ggatccttggtc 23197113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 172 - 275
Target Start/End: Complemental strand, 22642338 - 22642235
Alignment:
Q  172 catttgcttgtgcataatagggtgtcgaagttagcaatttgaatcctatgtcttcggcaaactttgccatctttcgaccagtgaacacggatccttggtc 271  Q
    |||||||||| |||||||| |||||||||||||| ||||| || ||| ||||||||||||| || |||||||||||||||||||| |||||| |||||||    
T  22642338 catttgcttgcgcataatatggtgtcgaagttagtaatttaaagcctgtgtcttcggcaaatttcgccatctttcgaccagtgaatacggattcttggtc 22642239  T
Q  272 tgtg 275  Q
    ||||    
T  22642238 tgtg 22642235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 172 - 275
Target Start/End: Original strand, 23622618 - 23622721
Alignment:
Q  172 catttgcttgtgcataatagggtgtcgaagttagcaatttgaatcctatgtcttcggcaaactttgccatctttcgaccagtgaacacggatccttggtc 271  Q
    |||| ||||| |||||||| |||||||||||||||||||| || ||| | ||||||| ||| || |||||||||||||||||||| ||||||||||||||    
T  23622618 cattcgcttgcgcataatatggtgtcgaagttagcaatttaaagcctgtatcttcggaaaatttcgccatctttcgaccagtgaatacggatccttggtc 23622717  T
Q  272 tgtg 275  Q
    ||||    
T  23622718 tgtg 23622721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 23622450 - 23622546
Alignment:
Q  4 catcatgaccaaatgtcagcctaaaaggtgtggtatttgtcgattctttgggaaatgttcgacatgcccacaaagcttcgcctaaaacttcaggcca 100  Q
    |||||||||||||||||| |||||||||||| || |||||| ||||||| ||| |||||||||||||||||||||| | || ||||| |||||||||    
T  23622450 catcatgaccaaatgtcaacctaaaaggtgtagtgtttgtcaattcttttggagatgttcgacatgcccacaaagccttgcataaaatttcaggcca 23622546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 271
Target Start/End: Original strand, 23810168 - 23810267
Alignment:
Q  172 catttgcttgtgcataatagggtgtcgaagttagcaatttgaatcctatgtcttcggcaaactttgccatctttcgaccagtgaacacggatccttggtc 271  Q
    |||||||||  |||||||| |||||||||||||  ||||| || ||  ||| ||| ||||| ||| |||| ||||||||||| ||||| |||||||||||    
T  23810168 catttgcttaggcataatatggtgtcgaagttaataatttaaaacccgtgttttcagcaaattttaccatttttcgaccagtaaacacagatccttggtc 23810267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 94
Target Start/End: Original strand, 23810000 - 23810090
Alignment:
Q  4 catcatgaccaaatgtcagcctaaaaggtgtggtatttgtcgattctttgggaaatgttcgacatgcccacaaagcttcgcctaaaacttc 94  Q
    |||||||||||||||  |  ||||| ||||| || |||||||||||||| ||| |  ||||||||||||| ||||||||||| | ||||||    
T  23810000 catcatgaccaaatgctaatctaaatggtgtagtgtttgtcgattctttaggagacattcgacatgcccataaagcttcgccaagaacttc 23810090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 96; Significance: 4e-47; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 160 - 275
Target Start/End: Original strand, 14743125 - 14743240
Alignment:
Q  160 cttcaacttgatcatttgcttgtgcataatagggtgtcgaagttagcaatttgaatcctatgtcttcggcaaactttgccatctttcgaccagtgaacac 259  Q
    ||||||| ||| ||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  14743125 cttcaacctgaccatttgcttgtgcataatagggtgtcgaagtcagcaatttaaaacctatgtcttcggcaaactttgccatctttcgaccagtgaacac 14743224  T
Q  260 ggatccttggtctgtg 275  Q
    ||||||||||||||||    
T  14743225 ggatccttggtctgtg 14743240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 14742966 - 14743065
Alignment:
Q  1 cagcatcatgaccaaatgtcagcctaaaaggtgtggtatttgtcgattctttgggaaatgttcgacatgcccacaaagcttcgcctaaaacttcaggcca 100  Q
    |||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||    
T  14742966 cagcatcatggccaaatgtcagcctaaaaggtgtggtatttgttgattctttgggagatgttcgacatgcccataaagcttcgcctaaaactttaggcca 14743065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 14563230 - 14563329
Alignment:
Q  1 cagcatcatgaccaaatgtcagcctaaaaggtgtggtatttgtcgattctttgggaaatgttcgacatgcccacaaagcttcgcctaaaacttcaggcca 100  Q
    ||||||||||||||||||| | ||||||||| || || |||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||    
T  14563230 cagcatcatgaccaaatgttaacctaaaaggcgtagtgtttgtcgattctttgggagatgttcgacatgcccacaaagcctcgcctaaaatttcaggcca 14563329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 13285365 - 13285464
Alignment:
Q  1 cagcatcatgaccaaatgtcagcctaaaaggtgtggtatttgtcgattctttgggaaatgttcgacatgcccacaaagcttcgcctaaaacttcaggcca 100  Q
    ||||||||||||||||||| | |||| |||||||||| || ||||| ||||| ||| ||||| ||||||||||||| |||||||||| || |||||||||    
T  13285365 cagcatcatgaccaaatgttaacctagaaggtgtggtgttcgtcgactcttttggagatgtttgacatgcccacaaggcttcgcctagaatttcaggcca 13285464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 192 - 275
Target Start/End: Original strand, 13285556 - 13285639
Alignment:
Q  192 ggtgtcgaagttagcaatttgaatcctatgtcttcggcaaactttgccatctttcgaccagtgaacacggatccttggtctgtg 275  Q
    ||||||||||| |||||||| || ||| | ||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||    
T  13285556 ggtgtcgaagtcagcaatttaaagcctgtatcttcggcaaattttgccatctttcgaccagtgaatacggatctttggtctgtg 13285639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 172 - 256
Target Start/End: Original strand, 14563401 - 14563485
Alignment:
Q  172 catttgcttgtgcataatagggtgtcgaagttagcaatttgaatcctatgtcttcggcaaactttgccatctttcgaccagtgaa 256  Q
    |||||||||||||||| || |||||||||||||||||||| || ||| | ||||||||||| || | ||||||||||||||||||    
T  14563401 catttgcttgtgcatagtatggtgtcgaagttagcaatttaaagcctgtatcttcggcaaatttcgacatctttcgaccagtgaa 14563485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 128646 - 128742
Alignment:
Q  4 catcatgaccaaatgtcagcctaaaaggtgtggtatttgtcgattctttgggaaatgttcgacatgcccacaaagcttcgcctaaaacttcaggcca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  128646 catcatgaccaaatgtcagcctaaaaggtgtggtatttgtcgattctttgggagatgttcgacaagcccacaaagcttcgcctaaaacttcaggcca 128742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 172 - 275
Target Start/End: Original strand, 135214 - 135317
Alignment:
Q  172 catttgcttgtgcataatagggtgtcgaagttagcaatttgaatcctatgtcttcggcaaactttgccatctttcgaccagtgaacacggatccttggtc 271  Q
    |||||| |||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  135214 catttgtttgtgcgtaatagggtgtcgaagttagcaatttaaaacctatgtcttcggcaaactttgccatctttcgaccagtgaacacggatccttggtc 135313  T
Q  272 tgtg 275  Q
    ||||    
T  135314 tgtg 135317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 88; Significance: 2e-42; HSPs: 6)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 68339 - 68240
Alignment:
Q  1 cagcatcatgaccaaatgtcagcctaaaaggtgtggtatttgtcgattctttgggaaatgttcgacatgcccacaaagcttcgcctaaaacttcaggcca 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  68339 cagcatcatgaccaaatgtcagcctaaaaggtgtggtgtttgtcgattctttgggagatgttcgacatgcccacaaagcttcgcccaaaacttcaggcca 68240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 77517 - 77418
Alignment:
Q  1 cagcatcatgaccaaatgtcagcctaaaaggtgtggtatttgtcgattctttgggaaatgttcgacatgcccacaaagcttcgcctaaaacttcaggcca 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  77517 cagcatcatgaccaaatgtcagcctaaaaggtgtggtgtttgtcgattctttgggagatgttcgacatgcccacaaagcttcgcccaaaacttcaggcca 77418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 160 - 275
Target Start/End: Complemental strand, 7533 - 7418
Alignment:
Q  160 cttcaacttgatcatttgcttgtgcataatagggtgtcgaagttagcaatttgaatcctatgtcttcggcaaactttgccatctttcgaccagtgaacac 259  Q
    |||| |||||| | |||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||| ||| |||| ||||||||||| |||||    
T  7533 cttcgacttgaccgtttgcttgtgcatagtatggtgtcgaagttagcaatttgaaacctatgtcttcggcaaattttaccatttttcgaccagtaaacac 7434  T
Q  260 ggatccttggtctgtg 275  Q
    ||||||||||||||||    
T  7433 ggatccttggtctgtg 7418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 161 - 275
Target Start/End: Complemental strand, 68179 - 68065
Alignment:
Q  161 ttcaacttgatcatttgcttgtgcataatagggtgtcgaagttagcaatttgaatcctatgtcttcggcaaactttgccatctttcgaccagtgaacacg 260  Q
    |||||| ||| ||||||||||||||||||| ||||| || ||||||||||| || ||||| ||||||| |||||||||||||||||||||||||||||||    
T  68179 ttcaacctgaccatttgcttgtgcataatatggtgttgaggttagcaatttaaaacctatatcttcggaaaactttgccatctttcgaccagtgaacacg 68080  T
Q  261 gatccttggtctgtg 275  Q
    ||||| |||||||||    
T  68079 gatccctggtctgtg 68065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 161 - 275
Target Start/End: Complemental strand, 77357 - 77243
Alignment:
Q  161 ttcaacttgatcatttgcttgtgcataatagggtgtcgaagttagcaatttgaatcctatgtcttcggcaaactttgccatctttcgaccagtgaacacg 260  Q
    |||||| ||| ||||||||||||||||||| ||||| || ||||||||||| || ||||| ||||||| |||||||||||||||||||||||||||||||    
T  77357 ttcaacctgaccatttgcttgtgcataatatggtgttgaggttagcaatttaaaacctatatcttcggaaaactttgccatctttcgaccagtgaacacg 77258  T
Q  261 gatccttggtctgtg 275  Q
    ||||| |||||||||    
T  77257 gatccctggtctgtg 77243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 7692 - 7593
Alignment:
Q  1 cagcatcatgaccaaatgtcagcctaaaaggtgtggtatttgtcgattctttgggaaatgttcgacatgcccacaaagcttcgcctaaaacttcaggcca 100  Q
    ||||||||||||| ||||||| |||||| |||||||| |||||||||||||||||| |||||||||||||||||| |||||| |||||||||||| ||||    
T  7692 cagcatcatgaccgaatgtcaacctaaatggtgtggtctttgtcgattctttgggagatgttcgacatgcccacagagcttcacctaaaacttcatgcca 7593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 22339582 - 22339681
Alignment:
Q  1 cagcatcatgaccaaatgtcagcctaaaaggtgtggtatttgtcgattctttgggaaatgttcgacatgcccacaaagcttcgcctaaaacttcaggcca 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  22339582 cagcatcatgaccaaatgtcagcctaaaaggtgtggtgtttgtcgattctttgggagatgttcgacatgcccacaaagcttctcctaaaacttcaggcca 22339681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 160 - 275
Target Start/End: Original strand, 22339741 - 22339856
Alignment:
Q  160 cttcaacttgatcatttgcttgtgcataatagggtgtcgaagttagcaatttgaatcctatgtcttcggcaaactttgccatctttcgaccagtgaacac 259  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||  ||||| || ||||| ||||||||||| ||||||||||||||||||||||||||    
T  22339741 cttcaacctgaccatttgcttgtgcataatagggtgtcgaagttaataatttaaagcctatatcttcggcaaattttgccatctttcgaccagtgaacac 22339840  T
Q  260 ggatccttggtctgtg 275  Q
    ||||||||||||||||    
T  22339841 ggatccttggtctgtg 22339856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 160 - 275
Target Start/End: Complemental strand, 1729018 - 1728903
Alignment:
Q  160 cttcaacttgatcatttgcttgtgcataatagggtgtcgaagttagcaatttgaatcctatgtcttcggcaaactttgccatctttcgaccagtgaacac 259  Q
    ||||||||||||||||||| ||||| || || |||||||||||||||||||| || ||| | ||||||||||| ||  |||| |||||||||||||| |     
T  1729018 cttcaacttgatcatttgcctgtgcgtattatggtgtcgaagttagcaatttaaagcctgtatcttcggcaaatttcaccatttttcgaccagtgaatat 1728919  T
Q  260 ggatccttggtctgtg 275  Q
     |||||||||||||||    
T  1728918 tgatccttggtctgtg 1728903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 88
Target Start/End: Complemental strand, 1729174 - 1729090
Alignment:
Q  4 catcatgaccaaatgtcagcctaaaaggtgtggtatttgtcgattctttgggaaatgttcgacatgcccacaaagcttcgcctaa 88  Q
    |||||||||||||||||| ||| |||||||| || |||||||||||||||||| | ||||||||||| || ||||||||||||||    
T  1729174 catcatgaccaaatgtcaacctgaaaggtgtagtgtttgtcgattctttgggagacgttcgacatgctcataaagcttcgcctaa 1729090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 220
Target Start/End: Original strand, 22461031 - 22461091
Alignment:
Q  160 cttcaacttgatcatttgcttgtgcataatagggtgtcgaagttagcaatttgaatcctat 220  Q
    |||| |||||| |||||||||| |||||||| ||||||||||||| ||||||||| |||||    
T  22461031 cttcgacttgaccatttgcttgagcataatatggtgtcgaagttaacaatttgaaacctat 22461091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0241 (Bit Score: 84; Significance: 6e-40; HSPs: 3)
Name: scaffold0241
Description:

Target: scaffold0241; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 18907 - 18808
Alignment:
Q  1 cagcatcatgaccaaatgtcagcctaaaaggtgtggtatttgtcgattctttgggaaatgttcgacatgcccacaaagcttcgcctaaaacttcaggcca 100  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  18907 cagcatcatgaccaaatgtcagcctaaaaggtgtagtgtttgtcgattctttaggagatgttcgacatgcccacaaagcttcgcctaaaacttcaggcca 18808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0241; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 160 - 237
Target Start/End: Complemental strand, 18748 - 18671
Alignment:
Q  160 cttcaacttgatcatttgcttgtgcataatagggtgtcgaagttagcaatttgaatcctatgtcttcggcaaactttg 237  Q
    ||||||| ||| ||||||||||||||||||| |||||||| ||||||||||| || ||||| ||||||||||||||||    
T  18748 cttcaacctgaccatttgcttgtgcataatatggtgtcgaggttagcaatttaaaacctatatcttcggcaaactttg 18671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0241; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 229 - 275
Target Start/End: Complemental strand, 15420 - 15374
Alignment:
Q  229 caaactttgccatctttcgaccagtgaacacggatccttggtctgtg 275  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||    
T  15420 caaactttgccatcttttgaccagtgaacacggatccttggtttgtg 15374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 84; Significance: 6e-40; HSPs: 4)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 122773 - 122872
Alignment:
Q  1 cagcatcatgaccaaatgtcagcctaaaaggtgtggtatttgtcgattctttgggaaatgttcgacatgcccacaaagcttcgcctaaaacttcaggcca 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||    
T  122773 cagcatcatgaccaaatgtcagcctaaaaggtgtggtgtttgtcgattctttgggagatgttcgacatgcccagaaagcttcgcctaaaactttaggcca 122872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 160 - 275
Target Start/End: Original strand, 122932 - 123047
Alignment:
Q  160 cttcaacttgatcatttgcttgtgcataatagggtgtcgaagttagcaatttgaatcctatgtcttcggcaaactttgccatctttcgaccagtgaacac 259  Q
    ||||||| ||| ||||||||||||||||||| |||||||| ||||||||||| || ||||| |||||||||||||||||||||||||||||| |||  ||    
T  122932 cttcaacctgaccatttgcttgtgcataatatggtgtcgaggttagcaatttaaaacctatatcttcggcaaactttgccatctttcgaccaatgagtac 123031  T
Q  260 ggatccttggtctgtg 275  Q
    ||| || |||||||||    
T  123032 ggacccctggtctgtg 123047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 160 - 275
Target Start/End: Complemental strand, 95025 - 94910
Alignment:
Q  160 cttcaacttgatcatttgcttgtgcataatagggtgtcgaagttagcaatttgaatcctatgtcttcggcaaactttgccatctttcgaccagtgaacac 259  Q
    |||| |||||| | ||||||||||||||  | ||||||||||| ||||||||||| |||  |||||||||||| |||| ||| ||||||||||| |||||    
T  95025 cttcgacttgaccgtttgcttgtgcatagcatggtgtcgaagtcagcaatttgaaacctgcgtcttcggcaaattttgtcatttttcgaccagtaaacac 94926  T
Q  260 ggatccttggtctgtg 275  Q
    ||||||||||||||||    
T  94925 ggatccttggtctgtg 94910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 4 - 100
Target Start/End: Complemental strand, 95180 - 95084
Alignment:
Q  4 catcatgaccaaatgtcagcctaaaaggtgtggtatttgtcgattctttgggaaatgttcgacatgcccacaaagcttcgcctaaaacttcaggcca 100  Q
    |||||||||||||||||| ||| || |||||||| || ||||||||||| ||| |||||||||||||||||| |||||| |||||||||||| ||||    
T  95180 catcatgaccaaatgtcaacctgaatggtgtggtgttcgtcgattcttttggagatgttcgacatgcccacagagcttcacctaaaacttcatgcca 95084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 22800782 - 22800881
Alignment:
Q  1 cagcatcatgaccaaatgtcagcctaaaaggtgtggtatttgtcgattctttgggaaatgttcgacatgcccacaaagcttcgcctaaaacttcaggcca 100  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||    
T  22800782 cagcatcatggccaaatatcagcctaaaaggtgtggtatttgtcgattctttgggagacgttcgacatgcctacaaagcttcgcctaaaacttcaggcca 22800881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 160 - 275
Target Start/End: Original strand, 22800940 - 22801055
Alignment:
Q  160 cttcaacttgatcatttgcttgtgcataatagggtgtcgaagttagcaatttgaatcctatgtcttcggcaaactttgccatctttcgaccagtgaacac 259  Q
    ||||||| ||| |||||||||||| |||||| ||||| ||||||| |||||| || ||||| ||||||||||||||||||||||| ||||||||||||||    
T  22800940 cttcaacctgaccatttgcttgtggataatatggtgttgaagttatcaatttaaaacctatatcttcggcaaactttgccatcttccgaccagtgaacac 22801039  T
Q  260 ggatccttggtctgtg 275  Q
    ||||||||||||||||    
T  22801040 ggatccttggtctgtg 22801055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 160 - 274
Target Start/End: Complemental strand, 21297971 - 21297857
Alignment:
Q  160 cttcaacttgatcatttgcttgtgcataatagggtgtcgaagttagcaatttgaatcctatgtcttcggcaaactttgccatctttcgaccagtgaacac 259  Q
    |||| |||||| ||||||||| |||||| || ||||||||||||||||||||||| ||| ||||||||||||||||| |||| ||||||||||| || ||    
T  21297971 cttcgacttgaccatttgcttatgcatagtatggtgtcgaagttagcaatttgaaacctgtgtcttcggcaaactttaccatttttcgaccagtaaatac 21297872  T
Q  260 ggatccttggtctgt 274  Q
     ||||||||||||||    
T  21297871 agatccttggtctgt 21297857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 172 - 274
Target Start/End: Original strand, 22690394 - 22690496
Alignment:
Q  172 catttgcttgtgcataatagggtgtcgaagttagcaatttgaatcctatgtcttcggcaaactttgccatctttcgaccagtgaacacggatccttggtc 271  Q
    |||||||||||||||| || ||||||||||||||||||||||| ||| ||||||||||||| ||| |||| ||||||||||| ||||| |||||||||||    
T  22690394 catttgcttgtgcatagtatggtgtcgaagttagcaatttgaaacctgtgtcttcggcaaattttaccatttttcgaccagtaaacacagatccttggtc 22690493  T
Q  272 tgt 274  Q
    |||    
T  22690494 tgt 22690496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 4 - 100
Target Start/End: Complemental strand, 21298127 - 21298031
Alignment:
Q  4 catcatgaccaaatgtcagcctaaaaggtgtggtatttgtcgattctttgggaaatgttcgacatgcccacaaagcttcgcctaaaacttcaggcca 100  Q
    |||||||||||||||||| ||| || |||||||| || ||||||||||||||| |||||||||||||||||| |||||| || ||||||||| ||||    
T  21298127 catcatgaccaaatgtcaacctgaatggtgtggtgttcgtcgattctttgggagatgttcgacatgcccacagagcttcacccaaaacttcatgcca 21298031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 41376389 - 41376485
Alignment:
Q  4 catcatgaccaaatgtcagcctaaaaggtgtggtatttgtcgattctttgggaaatgttcgacatgcccacaaagcttcgcctaaaacttcaggcca 100  Q
    |||||||| ||||||||| ||| |||||||| || |||||||||||||||||| | |||||||||||||| |||||||||||||| | |||||||||    
T  41376389 catcatgatcaaatgtcaacctgaaaggtgtagtgtttgtcgattctttgggagacgttcgacatgcccataaagcttcgcctaatatttcaggcca 41376485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 160 - 275
Target Start/End: Original strand, 41376545 - 41376660
Alignment:
Q  160 cttcaacttgatcatttgcttgtgcataatagggtgtcgaagttagcaatttgaatcctatgtcttcggcaaactttgccatctttcgaccagtgaacac 259  Q
    ||||||||||| ||||||| ||||| || || |||||||||||||||||||| || ||| | ||||||||||| ||  |||| |||||||||||||| |     
T  41376545 cttcaacttgaccatttgcctgtgcgtagtatggtgtcgaagttagcaatttaaagcctgtatcttcggcaaatttcaccatttttcgaccagtgaatat 41376644  T
Q  260 ggatccttggtctgtg 275  Q
     |||||||||||||||    
T  41376645 tgatccttggtctgtg 41376660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 22690223 - 22690322
Alignment:
Q  1 cagcatcatgaccaaatgtcagcctaaaaggtgtggtatttgtcgattctttgggaaatgttcgacatgcccacaaagcttcgcctaaaacttcaggcca 100  Q
    ||||||||||||||||||| | ||| || || ||||| || ||||||||| ||||| |||||||||||||||| |  ||||| |||||||||||| ||||    
T  22690223 cagcatcatgaccaaatgttaacctgaatggcgtggtgttcgtcgattctatgggagatgttcgacatgcccatagggcttcacctaaaacttcatgcca 22690322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 77; Significance: 9e-36; HSPs: 2)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 35171 - 35075
Alignment:
Q  1 cagcatcatgaccaaatgtcagcctaaaaggtgtggtatttgtcgattctttgggaaatgttcgacatgcccacaaagcttcgcctaaaacttcagg 97  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||    
T  35171 cagcatcatgaccaaatgtcaacctaaaaggtgtggtgtttgtcgattcttttggagatgttcgacatgcccacaaagcttcgcctaaaatttcagg 35075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 172 - 275
Target Start/End: Complemental strand, 35000 - 34897
Alignment:
Q  172 catttgcttgtgcataatagggtgtcgaagttagcaatttgaatcctatgtcttcggcaaactttgccatctttcgaccagtgaacacggatccttggtc 271  Q
    ||||||||||||||||||| || ||||| ||||||||||| || ||| | ||||||||||| || |||||||||||||||||||| ||||||||||||||    
T  35000 catttgcttgtgcataatatggcgtcgaggttagcaatttaaagcctgtatcttcggcaaatttcgccatctttcgaccagtgaatacggatccttggtc 34901  T
Q  272 tgtg 275  Q
    ||||    
T  34900 tgtg 34897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1900 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: scaffold1900
Description:

Target: scaffold1900; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 160 - 275
Target Start/End: Original strand, 567 - 682
Alignment:
Q  160 cttcaacttgatcatttgcttgtgcataatagggtgtcgaagttagcaatttgaatcctatgtcttcggcaaactttgccatctttcgaccagtgaacac 259  Q
    |||| |||||| | || ||||||||||||||  |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  567 cttcgacttgaccgttcgcttgtgcataatattgtgtcgaagtcagcaatttgaatcctatgtcttcggcaaattttgccatctttcgaccagtaaacac 666  T
Q  260 ggatccttggtctgtg 275  Q
     |||||||||||||||    
T  667 agatccttggtctgtg 682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1900; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 431 - 507
Alignment:
Q  24 ctaaaaggtgtggtatttgtcgattctttgggaaatgttcgacatgcccacaaagcttcgcctaaaacttcaggcca 100  Q
    ||||| ||||||||||||||  |||| |||||| |||||||||||||||||| || |||||||||||||||| ||||    
T  431 ctaaatggtgtggtatttgtttattccttgggagatgttcgacatgcccacagagattcgcctaaaacttcatgcca 507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 18167624 - 18167720
Alignment:
Q  4 catcatgaccaaatgtcagcctaaaaggtgtggtatttgtcgattctttgggaaatgttcgacatgcccacaaagcttcgcctaaaacttcaggcca 100  Q
    |||||||||||||||||| |||||||||||| || |||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||    
T  18167624 catcatgaccaaatgtcaacctaaaaggtgtagtgtttgtcgattctttgggagatgttcgacatgcccacaaagcctcgcctaaaatttcaggcca 18167720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 160 - 275
Target Start/End: Original strand, 18167780 - 18167895
Alignment:
Q  160 cttcaacttgatcatttgcttgtgcataatagggtgtcgaagttagcaatttgaatcctatgtcttcggcaaactttgccatctttcgaccagtgaacac 259  Q
    ||||||| ||| |||| | ||| ||||| || |||||||||||||||||||| || ||| | ||||||||||| || |||||||||||||||||||| ||    
T  18167780 cttcaacctgaccattcgtttgcgcatagtatggtgtcgaagttagcaatttaaagcctgtatcttcggcaaatttcgccatctttcgaccagtgaatac 18167879  T
Q  260 ggatccttggtctgtg 275  Q
     |||||||||||||||    
T  18167880 agatccttggtctgtg 18167895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 160 - 271
Target Start/End: Original strand, 14338804 - 14338915
Alignment:
Q  160 cttcaacttgatcatttgcttgtgcataatagggtgtcgaagttagcaatttgaatcctatgtcttcggcaaactttgccatctttcgaccagtgaacac 259  Q
    |||| |||||| |||||||||||||||| || |||||||||||||||||||| || ||| | |||||||| || ||  |||||||||| ||||| || ||    
T  14338804 cttccacttgaccatttgcttgtgcatagtatggtgtcgaagttagcaatttaaagcctttatcttcggcgaatttcaccatctttcggccagtaaatac 14338903  T
Q  260 ggatccttggtc 271  Q
    ||||||||||||    
T  14338904 ggatccttggtc 14338915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 268
Target Start/End: Original strand, 14163336 - 14163439
Alignment:
Q  165 acttgatcatttgcttgtgcataatagggtgtcgaagttagcaatttgaatcctatgtcttcggcaaactttgccatctttcgaccagtgaacacggatc 264  Q
    |||||| |||||||||| |||||||| ||||||||||||| || |||  ||||| | ||||  ||||| ||| |||| |||||||| || ||||| ||||    
T  14163336 acttgaccatttgcttgggcataatatggtgtcgaagttaacagtttatatcctgtttcttgcgcaaattttaccatttttcgacctgtaaacacagatc 14163435  T
Q  265 cttg 268  Q
    ||||    
T  14163436 cttg 14163439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 14163178 - 14163253
Alignment:
Q  3 gcatcatgaccaaatgtcagcctaaaaggtgtggtatttgtcgattctttgggaaatgttcgacatgcccacaaag 78  Q
    |||||||| |||||||| ||||||||||| || || || ||| |||||| |||| | |||||||||||||| ||||    
T  14163178 gcatcatggccaaatgttagcctaaaaggagtagtgttggtccattcttagggagaagttcgacatgcccataaag 14163253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 99
Target Start/End: Original strand, 14338690 - 14338743
Alignment:
Q  46 attctttgggaaatgttcgacatgcccacaaagcttcgcctaaaacttcaggcc 99  Q
    ||||||||||| | |||||||||||||| || ||||||||||| | ||||||||    
T  14338690 attctttgggagacgttcgacatgcccataaggcttcgcctaatatttcaggcc 14338743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 216
Target Start/End: Complemental strand, 18463547 - 18463491
Alignment:
Q  160 cttcaacttgatcatttgcttgtgcataatagggtgtcgaagttagcaatttgaatc 216  Q
    |||| |||||| |||||||||| ||||||||  |||||||||||| || ||||||||    
T  18463547 cttcgacttgaccatttgcttgagcataatatagtgtcgaagttaacagtttgaatc 18463491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 128532 - 128631
Alignment:
Q  1 cagcatcatgaccaaatgtcagcctaaaaggtgtggtatttgtcgattctttgggaaatgttcgacatgcccacaaagcttcgcctaaaacttcaggcca 100  Q
    ||||||||| ||||||||||| |||||||||||| || |||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||    
T  128532 cagcatcataaccaaatgtcaacctaaaaggtgtagtgtttgtcgattctttgggagatgttcgacatgcccacaaagcctcgcctaaaatttcaggcca 128631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 160 - 275
Target Start/End: Original strand, 128691 - 128806
Alignment:
Q  160 cttcaacttgatcatttgcttgtgcataatagggtgtcgaagttagcaatttgaatcctatgtcttcggcaaactttgccatctttcgaccagtgaacac 259  Q
    ||||||| ||| |||| || || ||||| || |||||||||||||||||||| || ||| | ||||||||||| || |||||||||||||||||||| ||    
T  128691 cttcaacctgaccattcgcctgcgcatagtatggtgtcgaagttagcaatttaaagcctgtatcttcggcaaatttcgccatctttcgaccagtgaatac 128790  T
Q  260 ggatccttggtctgtg 275  Q
     |||||||||||||||    
T  128791 agatccttggtctgtg 128806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 19031168 - 19031267
Alignment:
Q  1 cagcatcatgaccaaatgtcagcctaaaaggtgtggtatttgtcgattctttgggaaatgttcgacatgcccacaaagcttcgcctaaaacttcaggcca 100  Q
    ||||||||||||||||||| | |||||||||||| || |||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||    
T  19031168 cagcatcatgaccaaatgttaacctaaaaggtgtagtgtttgtcgattctttgggtgatgttcgacatgcccacaaagcttcgcctaagacttcaggcca 19031267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 160 - 275
Target Start/End: Original strand, 19031327 - 19031442
Alignment:
Q  160 cttcaacttgatcatttgcttgtgcataatagggtgtcgaagttagcaatttgaatcctatgtcttcggcaaactttgccatctttcgaccagtgaacac 259  Q
    ||||||||||| |||||||||| ||||| || |||||||||||||||||||| || ||||| |||||   |||||| |||||||||||||||||||| ||    
T  19031327 cttcaacttgaccatttgcttgcgcatagtatggtgtcgaagttagcaatttaaagcctatttcttcaagaaacttcgccatctttcgaccagtgaatac 19031426  T
Q  260 ggatccttggtctgtg 275  Q
    ||||||||||||||||    
T  19031427 ggatccttggtctgtg 19031442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 21514758 - 21514679
Alignment:
Q  1 cagcatcatgaccaaatgtcagcctaaaaggtgtggtatttgtcgattctttgggaaatgttcgacatgcccacaaagct 80  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  21514758 cagcatcatgaccaaatgtcagcctaaaaggtgtggtgtttgtcgattctttgggagatgttcgacatgcccacaaagct 21514679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 8e-33; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 10157113 - 10157014
Alignment:
Q  1 cagcatcatgaccaaatgtcagcctaaaaggtgtggtatttgtcgattctttgggaaatgttcgacatgcccacaaagcttcgcctaaaacttcaggcca 100  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||| ||||| |||||||||||||||||| ||||| ||||||||||||    
T  10157113 cagcatcatgaccaaatgttagcctaaaaggtgtggtgtttgtcgattcttttggagatgtttgacatgcccacaaagctttgcctagaacttcaggcca 10157014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 14689431 - 14689530
Alignment:
Q  1 cagcatcatgaccaaatgtcagcctaaaaggtgtggtatttgtcgattctttgggaaatgttcgacatgcccacaaagcttcgcctaaaacttcaggcca 100  Q
    ||||||||||||||||||||| |||||||||||| || |||||||||||||||||| |||||||||||||||| |||||||| ||||| | |||||||||    
T  14689431 cagcatcatgaccaaatgtcaacctaaaaggtgtagtgtttgtcgattctttgggagatgttcgacatgcccataaagcttctcctaatatttcaggcca 14689530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 160 - 274
Target Start/End: Original strand, 12028552 - 12028666
Alignment:
Q  160 cttcaacttgatcatttgcttgtgcataatagggtgtcgaagttagcaatttgaatcctatgtcttcggcaaactttgccatctttcgaccagtgaacac 259  Q
    ||||||||||| |||||||||| ||||| || ||||||||||| ||||||||||| ||| ||||||| ||||||||| |||| ||||||||||| |||||    
T  12028552 cttcaacttgaccatttgcttgcgcatagtatggtgtcgaagtaagcaatttgaagcctgtgtcttcagcaaactttaccatttttcgaccagtaaacac 12028651  T
Q  260 ggatccttggtctgt 274  Q
     ||| ||||||||||    
T  12028652 agattcttggtctgt 12028666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 7361434 - 7361533
Alignment:
Q  1 cagcatcatgaccaaatgtcagcctaaaaggtgtggtatttgtcgattctttgggaaatgttcgacatgcccacaaagcttcgcctaaaacttcaggcca 100  Q
    ||||||||||||||||||| | |||||||||||| || ||| |||||||||||||| | |||||||||||||| |||||||||||||| | |||||||||    
T  7361434 cagcatcatgaccaaatgttaacctaaaaggtgtagtgtttatcgattctttgggagacgttcgacatgcccataaagcttcgcctaatatttcaggcca 7361533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 160 - 275
Target Start/End: Original strand, 7361593 - 7361708
Alignment:
Q  160 cttcaacttgatcatttgcttgtgcataatagggtgtcgaagttagcaatttgaatcctatgtcttcggcaaactttgccatctttcgaccagtgaacac 259  Q
    ||||||||||| ||||||| |||||||| || |||||||||||||||||||| || ||| | |||||||| || ||  |||||||||||||||| || ||    
T  7361593 cttcaacttgaccatttgcctgtgcatagtatggtgtcgaagttagcaatttaaagcctgtatcttcggcgaatttcaccatctttcgaccagtaaatac 7361692  T
Q  260 ggatccttggtctgtg 275  Q
    ||||||||||||||||    
T  7361693 ggatccttggtctgtg 7361708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 160 - 275
Target Start/End: Complemental strand, 10156954 - 10156839
Alignment:
Q  160 cttcaacttgatcatttgcttgtgcataatagggtgtcgaagttagcaatttgaatcctatgtcttcggcaaactttgccatctttcgaccagtgaacac 259  Q
    ||||||| ||| ||||||||||||| ||||| |||||||| ||||||||||| || ||||| |||||||| || || ||||| |||||||||||||| ||    
T  10156954 cttcaacctgaccatttgcttgtgcttaatatggtgtcgaggttagcaatttaaaacctatatcttcggcgaatttcgccatttttcgaccagtgaatac 10156855  T
Q  260 ggatccttggtctgtg 275  Q
    ||| ||||||||||||    
T  10156854 ggacccttggtctgtg 10156839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 160 - 275
Target Start/End: Original strand, 14689590 - 14689705
Alignment:
Q  160 cttcaacttgatcatttgcttgtgcataatagggtgtcgaagttagcaatttgaatcctatgtcttcggcaaactttgccatctttcgaccagtgaacac 259  Q
    ||||||| ||| ||||||| |||||||| || |||||||||||||||||||| || ||| | ||||||||||| ||| |||||||||||||||| || ||    
T  14689590 cttcaacctgaccatttgcctgtgcatagtatggtgtcgaagttagcaatttaaagcctgtatcttcggcaaattttaccatctttcgaccagtaaatac 14689689  T
Q  260 ggatccttggtctgtg 275  Q
    ||||||||||| ||||    
T  14689690 ggatccttggtttgtg 14689705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 10786360 - 10786261
Alignment:
Q  1 cagcatcatgaccaaatgtcagcctaaaaggtgtggtatttgtcgattctttgggaaatgttcgacatgcccacaaagcttcgcctaaaacttcaggcca 100  Q
    ||||||||||||||||||||   || |||||||| ||||||||||||||||||||| | |||||||| ||||| |||||||||||||| | |||||||||    
T  10786360 cagcatcatgaccaaatgtcgatctgaaaggtgtagtatttgtcgattctttgggagaagttcgacacgcccataaagcttcgcctaatatttcaggcca 10786261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 12028393 - 12028492
Alignment:
Q  1 cagcatcatgaccaaatgtcagcctaaaaggtgtggtatttgtcgattctttgggaaatgttcgacatgcccacaaagcttcgcctaaaacttcaggcca 100  Q
    |||| |||||||||||||| || || || |||||||| || ||||||||||||||| ||||||||||||||||||||||||| |||||| ||||| ||||    
T  12028393 cagcgtcatgaccaaatgttagtctgaatggtgtggtgttcgtcgattctttgggagatgttcgacatgcccacaaagcttcacctaaatcttcatgcca 12028492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 13033323 - 13033224
Alignment:
Q  1 cagcatcatgaccaaatgtcagcctaaaaggtgtggtatttgtcgattctttgggaaatgttcgacatgcccacaaagcttcgcctaaaacttcaggcca 100  Q
    |||| |||||||||| ||| || || || |||||||| || ||||||||||||||| ||||||||||||||||||| |||||||| ||||||||| ||||    
T  13033323 cagcgtcatgaccaactgttagtctgaatggtgtggtgttcgtcgattctttgggagatgttcgacatgcccacaaggcttcgcccaaaacttcatgcca 13033224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 160 - 274
Target Start/End: Complemental strand, 13033164 - 13033050
Alignment:
Q  160 cttcaacttgatcatttgcttgtgcataatagggtgtcgaagttagcaatttgaatcctatgtcttcggcaaactttgccatctttcgaccagtgaacac 259  Q
    ||||||||||| |||||||||| |||||||| | || |||||||| ||||||||| |||  ||| || |||||||||||||| ||||||||||| || |     
T  13033164 cttcaacttgaccatttgcttgcgcataatatgctgacgaagttatcaatttgaagcctgcgtcctcagcaaactttgccatttttcgaccagtaaatat 13033065  T
Q  260 ggatccttggtctgt 274  Q
     ||||||||||||||    
T  13033064 agatccttggtctgt 13033050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 160 - 275
Target Start/End: Complemental strand, 10786201 - 10786087
Alignment:
Q  160 cttcaacttgatcatttgcttgtgcataatagggtgtcgaagttagcaatttgaatcctatgtcttcggcaaactttgccatctttcgaccagtgaacac 259  Q
    ||||||||||| |||||||||||||||| || | |||||||||||||||||| || ||| | ||||||||| | ||  |||| |||||||||||||| |     
T  10786201 cttcaacttgaccatttgcttgtgcatagtatg-tgtcgaagttagcaatttaaaacctgtatcttcggcacatttcaccatttttcgaccagtgaatat 10786103  T
Q  260 ggatccttggtctgtg 275  Q
     |||||||||||||||    
T  10786102 tgatccttggtctgtg 10786087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 138510 - 138591
Alignment:
Q  4 catcatgaccaaatgtcagcctaaaaggtgtggtatttgtcgattctttgggaaatgttcgacatgcccacaaagcttcgcc 85  Q
    ||||||||||||| || || ||||| |||||||| |||||| ||||||| ||| | |||||||||||||| |||||||||||    
T  138510 catcatgaccaaacgttagtctaaacggtgtggtgtttgtcaattctttaggagacgttcgacatgcccataaagcttcgcc 138591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0897 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0897
Description:

Target: scaffold0897; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 285 - 384
Alignment:
Q  1 cagcatcatgaccaaatgtcagcctaaaaggtgtggtatttgtcgattctttgggaaatgttcgacatgcccacaaagcttcgcctaaaacttcaggcca 100  Q
    ||||||||||||| ||||||| |||||||||||| || ||||||||||||||| || |||||||||||||||||||||| |||||||||| |||||||||    
T  285 cagcatcatgaccgaatgtcaacctaaaaggtgtagtgtttgtcgattctttgagagatgttcgacatgcccacaaagcctcgcctaaaatttcaggcca 384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0897; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 160 - 275
Target Start/End: Original strand, 445 - 560
Alignment:
Q  160 cttcaacttgatcatttgcttgtgcataatagggtgtcgaagttagcaatttgaatcctatgtcttcggcaaactttgccatctttcgaccagtgaacac 259  Q
    ||||||| ||| |||| ||||| ||||| || |||||||||||||||||||| || ||| | ||||||||||| || |||||||||||||||||||| ||    
T  445 cttcaacctgaccattcgcttgcgcatagtatggtgtcgaagttagcaatttaaagcctgtatcttcggcaaatttcgccatctttcgaccagtgaatac 544  T
Q  260 ggatccttggtctgtg 275  Q
     |||||||||||||||    
T  545 agatccttggtctgtg 560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 174 - 275
Target Start/End: Complemental strand, 56858 - 56757
Alignment:
Q  174 tttgcttgtgcataatagggtgtcgaagttagcaatttgaatcctatgtcttcggcaaactttgccatctttcgaccagtgaacacggatccttggtctg 273  Q
    |||||||||||||| || ||||||||||||||||||||||| ||| ||||||||| ||| |||||||| |||||| |||| |||||||||||||||||||    
T  56858 tttgcttgtgcatagtatggtgtcgaagttagcaatttgaaacctgtgtcttcggaaaattttgccatttttcgatcagtaaacacggatccttggtctg 56759  T
Q  274 tg 275  Q
    ||    
T  56758 tg 56757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 57031 - 56932
Alignment:
Q  1 cagcatcatgaccaaatgtcagcctaaaaggtgtggtatttgtcgattctttgggaaatgttcgacatgcccacaaagcttcgcctaaaacttcaggcca 100  Q
    ||||||||||||||||||||| ||| || |||||||| || ||||||||||||||| |||||||||||||||||| |||||| |||||||||||| ||||    
T  57031 cagcatcatgaccaaatgtcaacctgaatggtgtggtgttcgtcgattctttgggagatgttcgacatgcccacagagcttcacctaaaacttcatgcca 56932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 100
Target Start/End: Complemental strand, 27805 - 27708
Alignment:
Q  3 gcatcatgaccaaatgtcagcctaaaaggtgtggtatttgtcgattctttgggaaatgttcgacatgcccacaaagcttcgcctaaaacttcaggcca 100  Q
    ||||||||||||||||| | |||||||||||| || |||||||||||||||||| |||||||||| ||||||||||| |||||||||| |||||||||    
T  27805 gcatcatgaccaaatgttaacctaaaaggtgtagtgtttgtcgattctttgggagatgttcgacaggcccacaaagcctcgcctaaaatttcaggcca 27708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 160 - 275
Target Start/End: Complemental strand, 27648 - 27533
Alignment:
Q  160 cttcaacttgatcatttgcttgtgcataatagggtgtcgaagttagcaatttgaatcctatgtcttcggcaaactttgccatctttcgaccagtgaacac 259  Q
    ||||||| ||| |||||||||| |||||||| |||||||| ||||| ||||| || ||| | ||||||||||| || |||||||||||||||||||| ||    
T  27648 cttcaacctgaccatttgcttgcgcataatatggtgtcgaggttagaaatttaaagcctgtatcttcggcaaatttcgccatctttcgaccagtgaatac 27549  T
Q  260 ggatccttggtctgtg 275  Q
    ||||||||||||||||    
T  27548 ggatccttggtctgtg 27533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0304 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: scaffold0304
Description:

Target: scaffold0304; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 19024 - 19123
Alignment:
Q  1 cagcatcatgaccaaatgtcagcctaaaaggtgtggtatttgtcgattctttgggaaatgttcgacatgcccacaaagcttcgcctaaaacttcaggcca 100  Q
    ||||||||||||||||||| | |||||||||||| || ||| |||||||||||||| ||||| |||||||||||||||| |||||||||| |||||||||    
T  19024 cagcatcatgaccaaatgttaacctaaaaggtgtagtgtttttcgattctttgggagatgttagacatgcccacaaagcctcgcctaaaatttcaggcca 19123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0304; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 172 - 275
Target Start/End: Original strand, 19195 - 19298
Alignment:
Q  172 catttgcttgtgcataatagggtgtcgaagttagcaatttgaatcctatgtcttcggcaaactttgccatctttcgaccagtgaacacggatccttggtc 271  Q
    |||||||||||||||| || || || ||||||| |||||| || ||| | ||||||||||| || | |||||||||||||||||| ||||||||||||||    
T  19195 catttgcttgtgcatagtatggagtagaagttaacaatttaaagcctgtatcttcggcaaatttcgacatctttcgaccagtgaatacggatccttggtc 19294  T
Q  272 tgtg 275  Q
    ||||    
T  19295 tgtg 19298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0303 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0303
Description:

Target: scaffold0303; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 172 - 275
Target Start/End: Original strand, 14431 - 14534
Alignment:
Q  172 catttgcttgtgcataatagggtgtcgaagttagcaatttgaatcctatgtcttcggcaaactttgccatctttcgaccagtgaacacggatccttggtc 271  Q
    |||| ||||| |||||||| |||||||||||||||||||| || ||| | ||||||||||| ||||||||||||||||||||||| |||||||||| |||    
T  14431 cattcgcttgcgcataatatggtgtcgaagttagcaatttaaagcctgtatcttcggcaaattttgccatctttcgaccagtgaatacggatcctttgtc 14530  T
Q  272 tgtg 275  Q
    ||||    
T  14531 tgtg 14534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 160 - 275
Target Start/End: Complemental strand, 73472 - 73357
Alignment:
Q  160 cttcaacttgatcatttgcttgtgcataatagggtgtcgaagttagcaatttgaatcctatgtcttcggcaaactttgccatctttcgaccagtgaacac 259  Q
    ||||||||||| ||||||||||||||||||| ||  |||||||||||||||| || ||| | ||||||||||| || |||||||||||||||||||| ||    
T  73472 cttcaacttgaccatttgcttgtgcataatatggcatcgaagttagcaatttaaagcctgtatcttcggcaaatttcgccatctttcgaccagtgaatac 73373  T
Q  260 ggatccttggtctgtg 275  Q
     || ||||||||||||    
T  73372 agacccttggtctgtg 73357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 73616 - 73550
Alignment:
Q  4 catcatgaccaaatgtcagcctaaaaggtgtggtatttgtcgattctttgggaaatgttcgacatgc 70  Q
    |||||||||||||||||| |||||||||||| ||  ||||||||||||||||| |||||||||||||    
T  73616 catcatgaccaaatgtcaacctaaaaggtgtagtgcttgtcgattctttgggagatgttcgacatgc 73550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 33647 - 33743
Alignment:
Q  4 catcatgaccaaatgtcagcctaaaaggtgtggtatttgtcgattctttgggaaatgttcgacatgcccacaaagcttcgcctaaaacttcaggcca 100  Q
    |||||||||||||||| | ||||||||| || || |||||||||||||||||| | |||||||||||||||||||| |||||||||| |||||||||    
T  33647 catcatgaccaaatgttaacctaaaaggcgtagtgtttgtcgattctttgggagaggttcgacatgcccacaaagcctcgcctaaaatttcaggcca 33743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 172 - 275
Target Start/End: Original strand, 33815 - 33918
Alignment:
Q  172 catttgcttgtgcataatagggtgtcgaagttagcaatttgaatcctatgtcttcggcaaactttgccatctttcgaccagtgaacacggatccttggtc 271  Q
    |||||||||||||||| || || |||||||||| |||||| || | | | ||||||||||| || | |||||||||||||||||| ||||||||||||||    
T  33815 catttgcttgtgcatagtatggcgtcgaagttatcaatttaaagcttgtatcttcggcaaatttcgacatctttcgaccagtgaatacggatccttggtc 33914  T
Q  272 tgtg 275  Q
    ||||    
T  33915 tgtg 33918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 160 - 275
Target Start/End: Complemental strand, 16435 - 16320
Alignment:
Q  160 cttcaacttgatcatttgcttgtgcataatagggtgtcgaagttagcaatttgaatcctatgtcttcggcaaactttgccatctttcgaccagtgaacac 259  Q
    |||| |||||| | || |||||||||||||| ||||  ||||| |||||||||||||||||||||| |||||| ||||| |||||||||||||| ||||     
T  16435 cttcgacttgaccgttcgcttgtgcataatatggtgctgaagtcagcaatttgaatcctatgtctttggcaaattttgctatctttcgaccagtaaacat 16336  T
Q  260 ggatccttggtctgtg 275  Q
     |||||||||||||||    
T  16335 agatccttggtctgtg 16320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 160 - 275
Target Start/End: Complemental strand, 23047 - 22932
Alignment:
Q  160 cttcaacttgatcatttgcttgtgcataatagggtgtcgaagttagcaatttgaatcctatgtcttcggcaaactttgccatctttcgaccagtgaacac 259  Q
    |||| |||||| | || |||||||||||||| ||||  ||||| |||||||||||||||||||||| |||||| ||||| |||||||||||||| ||||     
T  23047 cttcgacttgaccgttcgcttgtgcataatatggtgctgaagtcagcaatttgaatcctatgtctttggcaaattttgctatctttcgaccagtaaacat 22948  T
Q  260 ggatccttggtctgtg 275  Q
     |||||||||||||||    
T  22947 agatccttggtctgtg 22932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 160 - 275
Target Start/End: Complemental strand, 8179 - 8064
Alignment:
Q  160 cttcaacttgatcatttgcttgtgcataatagggtgtcgaagttagcaatttgaatcctatgtcttcggcaaactttgccatctttcgaccagtgaacac 259  Q
    |||| |||||| | || |||||||||||||| ||||| ||||| |||||||||||||||||||||| |  ||| ||||| |||||||||||||| ||||     
T  8179 cttcgacttgaccgttcgcttgtgcataatatggtgttgaagtcagcaatttgaatcctatgtctttgttaaattttgctatctttcgaccagtaaacat 8080  T
Q  260 ggatccttggtctgtg 275  Q
     |||||||||||||||    
T  8079 agatccttggtctgtg 8064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 8335 - 8244
Alignment:
Q  4 catcatgaccaaatgtcagcctaaaaggtgtggtatttgtcgattctttgggaaatgttcgacatgcccacaaagcttcgcctaaaacttca 95  Q
    ||||||||||||| || |  ||||| ||||| |||||||| ||||| |||||| |||||||||||||||||| |||||||||||||||||||    
T  8335 catcatgaccaaacgttattctaaatggtgtagtatttgttgattccttgggagatgttcgacatgcccacagagcttcgcctaaaacttca 8244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 100
Target Start/End: Complemental strand, 23203 - 23107
Alignment:
Q  4 catcatgaccaaatgtcagcctaaaaggtgtggtatttgtcgattctttgggaaatgttcgacatgcccacaaagcttcgcctaaaacttcaggcca 100  Q
    ||||||||||||| || |  ||||| ||||| |||||||| ||||| |||||| |||||||||| ||||||| ||||||||||||||||||| ||||    
T  23203 catcatgaccaaacgttattctaaatggtgtagtatttgttgattccttgggagatgttcgacaggcccacagagcttcgcctaaaacttcatgcca 23107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 36411 - 36314
Alignment:
Q  1 cagcatcatgaccaaatgtcagcctaaaaggtgtggtatttgtcgattctttgggaaatgttcgacatgcccacaaagcttcgcctaaaacttcaggc 98  Q
    ||||||||||||||||||| | ||||||||| || || |||||||||||||||||| | |||||||||||| ||||||| |||||||||| |||||||    
T  36411 cagcatcatgaccaaatgttaacctaaaaggcgtagtgtttgtcgattctttgggagaggttcgacatgcctacaaagcctcgcctaaaatttcaggc 36314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 172 - 275
Target Start/End: Complemental strand, 36240 - 36137
Alignment:
Q  172 catttgcttgtgcataatagggtgtcgaagttagcaatttgaatcctatgtcttcggcaaactttgccatctttcgaccagtgaacacggatccttggtc 271  Q
    |||||||||||||||| || || |||||||||| |||||| || ||| | ||||||||||| || | |||||||||||||||||| ||||||||||||||    
T  36240 catttgcttgtgcatagtatggcgtcgaagttatcaatttaaagcctgtatcttcggcaaatttcgacatctttcgaccagtgaatacggatccttggtc 36141  T
Q  272 tgtg 275  Q
    ||||    
T  36140 tgtg 36137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0239 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0239
Description:

Target: scaffold0239; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 160 - 274
Target Start/End: Original strand, 25860 - 25974
Alignment:
Q  160 cttcaacttgatcatttgcttgtgcataatagggtgtcgaagttagcaatttgaatcctatgtcttcggcaaactttgccatctttcgaccagtgaacac 259  Q
    ||||||||||| |||||||||| ||||| || ||| ||||||||||||||||||| ||   ||| |||||||||||| |||| ||||||| ||| |||||    
T  25860 cttcaacttgaccatttgcttgcgcatagtatggtatcgaagttagcaatttgaagcccgcgtcctcggcaaactttaccatttttcgactagtaaacac 25959  T
Q  260 ggatccttggtctgt 274  Q
     ||||||||||||||    
T  25960 agatccttggtctgt 25974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0239; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 25701 - 25800
Alignment:
Q  1 cagcatcatgaccaaatgtcagcctaaaaggtgtggtatttgtcgattctttgggaaatgttcgacatgcccacaaagcttcgcctaaaacttcaggcca 100  Q
    |||| |||||||||||||| || || || |||||||| || ||||||||||||||| ||||||||||||||||||| || ||||| ||||||||| ||||    
T  25701 cagcgtcatgaccaaatgttagtctgaatggtgtggtgttcgtcgattctttgggagatgttcgacatgcccacaaggcctcgcccaaaacttcatgcca 25800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 100
Target Start/End: Complemental strand, 3138 - 3042
Alignment:
Q  4 catcatgaccaaatgtcagcctaaaaggtgtggtatttgtcgattctttgggaaatgttcgacatgcccacaaagcttcgcctaaaacttcaggcca 100  Q
    |||||||||||||||| |  ||||| |||||||| |||||||||||||| ||| ||||||||||||||||  |||||| ||| | ||||||| ||||    
T  3138 catcatgaccaaatgttaatctaaatggtgtggtgtttgtcgattctttaggagatgttcgacatgcccatcaagctttgccaagaacttcatgcca 3042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 162 - 274
Target Start/End: Complemental strand, 113499 - 113387
Alignment:
Q  162 tcaacttgatcatttgcttgtgcataatagggtgtcgaagttagcaatttgaatcctatgtcttcggcaaactttgccatctttcgaccagtgaacacgg 261  Q
    ||||| ||| |||||||||| ||||| || || ||||| ||||| | ||| || ||| | ||||| ||||||||| |||| ||||||||||| || || |    
T  113499 tcaacctgaccatttgcttgggcatattatggcgtcgaggttagtagtttaaaacctgtatcttcagcaaactttaccatttttcgaccagtaaatacag 113400  T
Q  262 atccttggtctgt 274  Q
    |||||||||||||    
T  113399 atccttggtctgt 113387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 109369 - 109297
Alignment:
Q  1 cagcatcatgaccaaatgtcagcctaaaaggtgtggtatttgtcgattctttgggaaatgttcgacatgccca 73  Q
    |||||||||| |||||||| |   |||| || ||||| |||||||||||||| ||| ||||||||||||||||    
T  109369 cagcatcatggccaaatgttaatttaaatggcgtggtgtttgtcgattctttaggagatgttcgacatgccca 109297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 274
Target Start/End: Complemental strand, 152815 - 152703
Alignment:
Q  162 tcaacttgatcatttgcttgtgcataatagggtgtcgaagttagcaatttgaatcctatgtcttcggcaaactttgccatctttcgaccagtgaacacgg 261  Q
    ||||| ||| ||||| |||| ||||| || || ||||| ||||| | ||| || ||| | ||||| ||||||||| |||| ||||||||||| || || |    
T  152815 tcaacctgaccattttcttgggcatattatggcgtcgaggttagaagtttaaaacctgtatcttcagcaaactttaccatttttcgaccagtaaatacag 152716  T
Q  262 atccttggtctgt 274  Q
    |||||||||||||    
T  152715 atccttggtctgt 152703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University