View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4772_high_9 (Length: 213)
Name: NF4772_high_9
Description: NF4772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4772_high_9 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 142; Significance: 1e-74; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 64 - 213
Target Start/End: Original strand, 16617135 - 16617284
Alignment:
| Q |
64 |
ggaggaggaagattaccacagctggagggcattttcctttcattgtgaatgaatccagttcaggtgctgcaacgtcagtgaactgattgaaaccttcacc |
163 |
Q |
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| T |
16617135 |
ggaggaggaagattaccacagctggagggcattttcctttcattgtgaatgaatccggttcaggtgccgcaacgtcagtgaactgattgaaaccttcacc |
16617234 |
T |
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| Q |
164 |
tatgctagcacaaacgccaggagtatcaaaggtggttgcaacaaagctgc |
213 |
Q |
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| T |
16617235 |
tatgctagcacaaacgccaggagtatcaaaggtggttgcaacaaagctgc |
16617284 |
T |
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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 209
Target Start/End: Original strand, 16628914 - 16628987
Alignment:
| Q |
136 |
cgtcagtgaactgattgaaaccttcacctatgctagcacaaacgccaggagtatcaaaggtggttgcaacaaag |
209 |
Q |
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| T |
16628914 |
cgtcagtgaattgattgaaaccattacacatgctagcagaaacaccaggagtatcaaagggggttgcatcaaag |
16628987 |
T |
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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 209
Target Start/End: Original strand, 16637795 - 16637868
Alignment:
| Q |
136 |
cgtcagtgaactgattgaaaccttcacctatgctagcacaaacgccaggagtatcaaaggtggttgcaacaaag |
209 |
Q |
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| T |
16637795 |
cgtcagtgaattgattgaaaccattacacatgctagcagaaacaccaggagtatcaaagggggttgcatcaaag |
16637868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 3574105 - 3574169
Alignment:
| Q |
137 |
gtcagtgaactgattgaaaccttcacctatgctagcacaaacgccaggagtatcaaaggtggttg |
201 |
Q |
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| T |
3574105 |
gtcagtgaattgattgaaaccgttacacatgctagcagaaacactaggagtatcaaaggtggttg |
3574169 |
T |
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Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 72 - 155
Target Start/End: Original strand, 38877635 - 38877718
Alignment:
| Q |
72 |
aagattaccacagctggagggcattttcctttcattgtgaatgaatccagttcaggtgctgcaacgtcagtgaactgattgaaa |
155 |
Q |
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| T |
38877635 |
aagattaccacagtttgagggcattttcctttcattgtggatgaattcaagtcagcttctgcagagtcagcgaactgattgaaa |
38877718 |
T |
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