View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4772_low_1 (Length: 602)
Name: NF4772_low_1
Description: NF4772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4772_low_1 |
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| [»] scaffold1089 (1 HSPs) |
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| [»] scaffold1377 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 6e-88; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 13 - 185
Target Start/End: Complemental strand, 14308899 - 14308727
Alignment:
| Q |
13 |
tgagatgaatactatcaacagaccaaatcaatcaaatacatttgtgctggctaatacaacaacaataattcagattatcttagatgtaaattggtagaaa |
112 |
Q |
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| T |
14308899 |
tgagaagaatactatcaacagaccaaatcaatcaaatacatttgtgctggctaatacaacaacaataattcagattatcttagatgtaaattggtagaaa |
14308800 |
T |
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| Q |
113 |
cagttaaaacatttcaagagatattactcatgataatgagctcaaagtaaattatatagaagatttaattgaa |
185 |
Q |
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| T |
14308799 |
cagttaaaacatttcaagagatatcactcatgataatgagctcaaagtaaattatatagaagatttaattgaa |
14308727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 438 - 583
Target Start/End: Complemental strand, 14308728 - 14308583
Alignment:
| Q |
438 |
aatttttggacaggaggataatccttctataatttgtctctttcccaaaagcatccaatttgaggggtgagtagtaatgttgattgtcatgtcttgtaaa |
537 |
Q |
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| T |
14308728 |
aatttttggataggaggataatccttctataatttgtctctttcccaaaagcatccaatttgaagggtaagtagtaatgttgattgtcatgtcttgcaaa |
14308629 |
T |
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| Q |
538 |
cgtcttgtgttctgcaaaatatatgctgcaaatcgaagatcatttc |
583 |
Q |
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| T |
14308628 |
cgtcttgcgttctgcaaaatatatgttgcaaatcgaagatcatttc |
14308583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 443 - 582
Target Start/End: Original strand, 2467448 - 2467587
Alignment:
| Q |
443 |
ttggacaggaggataatccttctataatttgtctctttcccaaaagcatccaatttgaggggtgagtagtaatgttgattgtcatgtcttgtaaacgtct |
542 |
Q |
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| T |
2467448 |
ttggacaagaggataattcttcaattatttgactcttttccaaaagctttccatttgaggagctagttgtaacgtcgattgtcatgttttgtaaaattct |
2467547 |
T |
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| Q |
543 |
tgtgttctgcaaaatatatgctgcaaatcgaagatcattt |
582 |
Q |
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| T |
2467548 |
cccattctgcaatatatatgttgcaaatcgaagatcattt |
2467587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 420 - 577
Target Start/End: Original strand, 14438152 - 14438310
Alignment:
| Q |
420 |
aaagtttacat-cttgagaaatttttggacaggaggataatccttctataatttgtctctttcccaaaagcatccaatttgaggggtgagtagtaatgtt |
518 |
Q |
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| T |
14438152 |
aaagtttacatgctggagaaatccttggacaagaggataattcttctataatttgactccttttcaaaagcatgtttattgaggacttagtagttaagtc |
14438251 |
T |
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| Q |
519 |
gattgtcatgtcttgtaaacgtcttgtgttctgcaaaatatatgctgcaaatcgaagat |
577 |
Q |
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| T |
14438252 |
gattgtcatatcttgtaaaagcctcgcattctgcaaaatatatgatgcaaatctaagat |
14438310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 547 - 582
Target Start/End: Complemental strand, 7872329 - 7872294
Alignment:
| Q |
547 |
ttctgcaaaatatatgctgcaaatcgaagatcattt |
582 |
Q |
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| T |
7872329 |
ttctgcaaaatatatgttgcaaatcgaagatcattt |
7872294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1089 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold1089
Description:
Target: scaffold1089; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 411 - 575
Target Start/End: Original strand, 510 - 675
Alignment:
| Q |
411 |
attcaaataaaagtttacat-cttgagaaatttttggacaggaggataatccttctataatttgtctctttcccaaaagcatccaatttgaggggtgagt |
509 |
Q |
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| T |
510 |
attcaaatgtaagtttacatgctggagaaatccttggacaagaggacaattcttctataatttcactcctttctaaaagcatttcatttgaggagcgagt |
609 |
T |
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| Q |
510 |
agtaatgttgattgtcatgtcttgtaaacgtcttgtgttctgcaaaatatatgctgcaaatcgaag |
575 |
Q |
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| T |
610 |
agtaacgtcgattgtcatatcttgtaaaaacctagcattctgcagaatatatgttgcaaatagaag |
675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1377 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold1377
Description:
Target: scaffold1377; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 519 - 577
Target Start/End: Original strand, 1343 - 1401
Alignment:
| Q |
519 |
gattgtcatgtcttgtaaacgtcttgtgttctgcaaaatatatgctgcaaatcgaagat |
577 |
Q |
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| T |
1343 |
gattgtcatatcttgtaaaagcctcgcattctgcaaaatatatgttgcaaatcgaagat |
1401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 580
Target Start/End: Original strand, 37996590 - 37996651
Alignment:
| Q |
519 |
gattgtcatgtcttgtaaacgtcttgtgttctgcaaaatatatgctgcaaatcgaagatcat |
580 |
Q |
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| T |
37996590 |
gattctcatgtcttgtaaaagacttgcattatgcaaaatatatcttgcaaatcgaagatcat |
37996651 |
T |
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