View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4772_low_11 (Length: 239)

Name: NF4772_low_11
Description: NF4772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4772_low_11
NF4772_low_11
[»] chr1 (5 HSPs)
chr1 (15-239)||(10595196-10595426)
chr1 (15-70)||(28504711-28504766)
chr1 (42-90)||(6219602-6219653)
chr1 (19-72)||(8792965-8793018)
chr1 (15-68)||(27293436-27293489)
[»] chr7 (4 HSPs)
chr7 (16-90)||(30935364-30935440)
chr7 (23-69)||(16810449-16810495)
chr7 (16-70)||(16953109-16953163)
chr7 (15-68)||(10525061-10525114)
[»] chr4 (2 HSPs)
chr4 (16-68)||(54458615-54458667)
chr4 (19-90)||(13302114-13302188)
[»] chr6 (1 HSPs)
chr6 (15-70)||(9530547-9530602)
[»] chr3 (3 HSPs)
chr3 (40-93)||(40473009-40473065)
chr3 (19-91)||(27812181-27812256)
chr3 (19-90)||(39840636-39840710)
[»] chr8 (3 HSPs)
chr8 (19-89)||(10028629-10028702)
chr8 (19-62)||(10028751-10028794)
chr8 (15-71)||(10028898-10028954)
[»] chr5 (2 HSPs)
chr5 (19-68)||(20399034-20399083)
chr5 (23-90)||(11275820-11275890)
[»] scaffold0198 (1 HSPs)
scaffold0198 (41-92)||(11926-11980)


Alignment Details
Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 15 - 239
Target Start/End: Complemental strand, 10595426 - 10595196
Alignment:
Q  15 ctagtttgaaatattaataaagccggggactaatttgagaatgacttat---aaagaca---atcaatttgatggtttactcgattctgatatcataaac 108  Q
    |||||||||||||||||||||| ||| || |||||| | ||||||||||   ||||||    |||||||||||||||||||||||| ||||||| |||||    
T  10595426 ctagtttgaaatattaataaagtcggagattaatttaaaaatgacttattataaagacggagatcaatttgatggtttactcgattttgatatcgtaaac 10595327  T
Q  109 ctcttcctacactctcaaatccaatggttgggattcaatcattgactcaatattaaatctaaactatacacggccaccccctctttacacacgcacactc 208  Q
    ||||||| ||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10595326 ctcttccaacactctcaaatccaatggttcggattcaatcattctctcaatattaaatctaaactatacacggccaccccctctttacacacgcacactc 10595227  T
Q  209 ttatctgtctcttcctcacgtgcgccgcacc 239  Q
    |||||||||||||||||||||||||||||||    
T  10595226 ttatctgtctcttcctcacgtgcgccgcacc 10595196  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 28504766 - 28504711
Alignment:
Q  15 ctagtttgaaatattaataaagccggggactaatttgagaatgacttataaagaca 70  Q
    ||||||||||||||||||| || |   ||||||||||||||||||||| |||||||    
T  28504766 ctagtttgaaatattaatagagtcatagactaatttgagaatgacttacaaagaca 28504711  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 6219653 - 6219602
Alignment:
Q  42 gactaatttgagaatgacttataaagac---aatcaatttgatggtttactc 90  Q
    ||||| ||| ||||||||||||||||||   |||||||||||||||||||||    
T  6219653 gactagtttaagaatgacttataaagacaaaaatcaatttgatggtttactc 6219602  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 8793018 - 8792965
Alignment:
Q  19 tttgaaatattaataaagccggggactaatttgagaatgacttataaagacaat 72  Q
    ||||||||||||||| ||  || ||||||||||||| ||||||| |||||||||    
T  8793018 tttgaaatattaatagagttggagactaatttgagagtgacttacaaagacaat 8792965  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 27293436 - 27293489
Alignment:
Q  15 ctagtttgaaatattaataaagccggggactaatttgagaatgacttataaaga 68  Q
    |||||||||||||||||||||| |   ||||||||| ||||||||||| |||||    
T  27293436 ctagtttgaaatattaataaagtcatagactaatttaagaatgacttacaaaga 27293489  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 30935364 - 30935440
Alignment:
Q  16 tagtttgaaatattaataaagccggggactaatttgagaatgacttataa--agacaatcaatttgatggtttactc 90  Q
    ||||||||||||||||||||| ||| ||||||||||||| ||||||| ||  ||| || ||||||||| ||||||||    
T  30935364 tagtttgaaatattaataaagtcggagactaatttgagagtgacttacaaagagagaaccaatttgatagtttactc 30935440  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 16810495 - 16810449
Alignment:
Q  23 aaatattaataaagccggggactaatttgagaatgacttataaagac 69  Q
    ||||||||||| || ||||||||||||||||| ||||||| ||||||    
T  16810495 aaatattaatatagtcggggactaatttgagagtgacttacaaagac 16810449  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 16953163 - 16953109
Alignment:
Q  16 tagtttgaaatattaataaagccggggactaatttgagaatgacttataaagaca 70  Q
    |||||||||||||||||| || |  | |||||||||||||||||||| |||||||    
T  16953163 tagtttgaaatattaatagagtcttgaactaatttgagaatgacttacaaagaca 16953109  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 10525061 - 10525114
Alignment:
Q  15 ctagtttgaaatattaataaagccggggactaatttgagaatgacttataaaga 68  Q
    |||||||||||||||||||  | ||||||| ||||||||| ||||||| |||||    
T  10525061 ctagtttgaaatattaatagggtcggggacaaatttgagagtgacttacaaaga 10525114  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 54458667 - 54458615
Alignment:
Q  16 tagtttgaaatattaataaagccggggactaatttgagaatgacttataaaga 68  Q
    ||||||||||||||||||||| |||||||||| |||||||||| ||| |||||    
T  54458667 tagtttgaaatattaataaagtcggggactaaattgagaatgatttacaaaga 54458615  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 13302188 - 13302114
Alignment:
Q  19 tttgaaatattaataaagccggggactaatttgagaatgacttataaagaca---atcaatttgatggtttactc 90  Q
    |||||||| |||||| |  | ||||||||||||||||||||||| |||||||   ||||||||| ||||||||||    
T  13302188 tttgaaatgttaatagaagcagggactaatttgagaatgacttacaaagacagggatcaatttggtggtttactc 13302114  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 9530602 - 9530547
Alignment:
Q  15 ctagtttgaaatattaataaagccggggactaatttgagaatgacttataaagaca 70  Q
    ||||||||||||||||||||||   | ||||||||||||||||||||| |||||||    
T  9530602 ctagtttgaaatattaataaagttagagactaatttgagaatgacttacaaagaca 9530547  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 93
Target Start/End: Original strand, 40473009 - 40473065
Alignment:
Q  40 gggactaatttgagaatgacttataaagac---aatcaatttgatggtttactcgat 93  Q
    ||||||||||| |||||||| |||||||||   ||||||||||||||||||||||||    
T  40473009 gggactaatttaagaatgacatataaagacaaaaatcaatttgatggtttactcgat 40473065  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 27812256 - 27812181
Alignment:
Q  19 tttgaaatattaataaagccggggactaatttgagaatgacttataaagaca---atcaatttgatggtttactcg 91  Q
    ||||||||||||||| |  | | ||||||||| ||||||||||| |||||||   ||||||||||| |||||||||    
T  27812256 tttgaaatattaatagactcagagactaatttaagaatgacttacaaagacattgatcaatttgatagtttactcg 27812181  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 39840710 - 39840636
Alignment:
Q  19 tttgaaatattaataaagccggggactaatttgagaatgacttataaagaca---atcaatttgatggtttactc 90  Q
    ||||||||||||||| || | | ||||||||||||||| ||||| |||||||   |||||||||||  |||||||    
T  39840710 tttgaaatattaatagagtcagagactaatttgagaatcacttacaaagacagggatcaatttgataatttactc 39840636  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 10028702 - 10028629
Alignment:
Q  19 tttgaaatattaataaagccggggactaatttgagaatgacttataaagaca---atcaatttgatggtttact 89  Q
    ||||||||||||||| || | | ||||||||||||||||||||| ||| |||   ||||||||| |||||||||    
T  10028702 tttgaaatattaatagagtcagtgactaatttgagaatgacttacaaatacattgatcaatttggtggtttact 10028629  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 10028794 - 10028751
Alignment:
Q  19 tttgaaatattaataaagccggggactaatttgagaatgactta 62  Q
    ||||||||||||||| || ||| |||||||||||||||||||||    
T  10028794 tttgaaatattaatagagtcggtgactaatttgagaatgactta 10028751  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 10028898 - 10028954
Alignment:
Q  15 ctagtttgaaatattaataaagccggggactaatttgagaatgacttataaagacaa 71  Q
    |||||||||||||||||||||| |   ||||||||||||| |||| || ||||||||    
T  10028898 ctagtttgaaatattaataaagtcaaagactaatttgagagtgacctacaaagacaa 10028954  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 20399034 - 20399083
Alignment:
Q  19 tttgaaatattaataaagccggggactaatttgagaatgacttataaaga 68  Q
    ||||||||||||||| || | |||||||||||||||||| |||| |||||    
T  20399034 tttgaaatattaatagagtcagggactaatttgagaatgtcttacaaaga 20399083  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 90
Target Start/End: Original strand, 11275820 - 11275890
Alignment:
Q  23 aaatattaataaagccggggactaatttgagaatgacttataaagaca---atcaatttgatggtttactc 90  Q
    |||||||||||||| | | ||||||||||||||||| ||| |||||||   | |||||| |||||||||||    
T  11275820 aaatattaataaagtcagagactaatttgagaatgatttacaaagacatggaacaatttaatggtttactc 11275890  T

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Target: scaffold0198 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 92
Target Start/End: Original strand, 11926 - 11980
Alignment:
Q  41 ggactaatttgagaatgacttataaagaca---atcaatttgatggtttactcga 92  Q
    |||||||||||||| ||||||| |||||||   ||||||||||||||||| ||||    
T  11926 ggactaatttgagagtgacttacaaagacatggatcaatttgatggtttattcga 11980  T

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