View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4772_low_13 (Length: 204)

Name: NF4772_low_13
Description: NF4772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4772_low_13
NF4772_low_13
[»] scaffold0036 (2 HSPs)
scaffold0036 (101-188)||(23680-23768)
scaffold0036 (3-36)||(23582-23615)
[»] chr4 (1 HSPs)
chr4 (108-188)||(10040704-10040785)
[»] chr3 (2 HSPs)
chr3 (108-188)||(42803532-42803613)
chr3 (112-185)||(20115053-20115127)
[»] chr1 (1 HSPs)
chr1 (108-160)||(3394402-3394455)
[»] chr7 (1 HSPs)
chr7 (110-164)||(7690668-7690723)
[»] chr6 (2 HSPs)
chr6 (108-162)||(11578840-11578894)
chr6 (115-161)||(14392818-14392864)


Alignment Details
Target: scaffold0036 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 101 - 188
Target Start/End: Original strand, 23680 - 23768
Alignment:
Q  101 tgctttgtttgttacataacgttgttttgcaggaa-atgttaatgatagatggaggtggttgcttgaacctaaccaaggctattcagtg 188  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23680 tgctttgtttgttacataacgttgttttgcaggaacatgttaatgatagatggaggtggttgcttgaacctaaccaaggctattcagtg 23768  T

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Target: scaffold0036; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 23582 - 23615
Alignment:
Q  3 cggtagctgatatggcggtgttaggacgggagga 36  Q
    |||||||||||||||||||||||||| |||||||    
T  23582 cggtagctgatatggcggtgttaggatgggagga 23615  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 188
Target Start/End: Original strand, 10040704 - 10040785
Alignment:
Q  108 tttgttacataacgttgttttgcaggaa-atgttaatgatagatggaggtggttgcttgaacctaaccaaggctattcagtg 188  Q
    ||||| |||||||||||||||| ||||| |||||| ||||||||  || |||| ||||||||||||||||| ||| ||||||    
T  10040704 tttgtcacataacgttgttttgtaggaacatgttattgatagataaagatggtcgcttgaacctaaccaagactactcagtg 10040785  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 188
Target Start/End: Original strand, 42803532 - 42803613
Alignment:
Q  108 tttgttacataacgttgttttgcaggaa-atgttaatgatagatggaggtggttgcttgaacctaaccaaggctattcagtg 188  Q
    ||||||||||||| |||||||||| ||| |||||||||||||||||| |||||| ||||| | ||  | |||||||||||||    
T  42803532 tttgttacataactttgttttgcatgaacatgttaatgatagatggaagtggttacttgatcatacacgaggctattcagtg 42803613  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 112 - 185
Target Start/End: Complemental strand, 20115127 - 20115053
Alignment:
Q  112 ttacataacgttgttttgcaggaa-atgttaatgatagatggaggtggttgcttgaacctaaccaaggctattca 185  Q
    |||||||| || |||||||||||  ||||||||||||| | || |||||||||||||||||  ||||||||||||    
T  20115127 ttacataatgtggttttgcaggaccatgttaatgatagtttgaagtggttgcttgaacctactcaaggctattca 20115053  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 3394402 - 3394455
Alignment:
Q  108 tttgttacataacgttgttttgcaggaa-atgttaatgatagatggaggtggtt 160  Q
    ||||||||||||| |||||||||||||| |||||||||| ||||||| ||||||    
T  3394402 tttgttacataactttgttttgcaggaacatgttaatgacagatggaagtggtt 3394455  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 110 - 164
Target Start/End: Complemental strand, 7690723 - 7690668
Alignment:
Q  110 tgttacataacgttgttttgcagga-aatgttaatgatagatggaggtggttgctt 164  Q
    ||||||||||  ||||||||||||| ||||||||||| || |||||||||||||||    
T  7690723 tgttacataattttgttttgcaggacaatgttaatgacagttggaggtggttgctt 7690668  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 108 - 162
Target Start/End: Complemental strand, 11578894 - 11578840
Alignment:
Q  108 tttgttacataacgttgttttgcagga-aatgttaatgatagatggaggtggttgc 162  Q
    |||||||||||||||||||||||||||  ||||||||||||| |||| ||||||||    
T  11578894 tttgttacataacgttgttttgcaggaccatgttaatgatag-tggaagtggttgc 11578840  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 161
Target Start/End: Complemental strand, 14392864 - 14392818
Alignment:
Q  115 cataacgttgttttgcaggaaatgttaatgatagatggaggtggttg 161  Q
    |||||||||||||||||||||| ||| ||||||  ||||||||||||    
T  14392864 cataacgttgttttgcaggaaaagttcatgatacttggaggtggttg 14392818  T

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