View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4772_low_2 (Length: 574)
Name: NF4772_low_2
Description: NF4772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4772_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 524; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 9 - 556
Target Start/End: Complemental strand, 52170674 - 52170127
Alignment:
| Q |
9 |
gacatcatcataaagtttaaacaaactgctattgaatgtgatgttgtcgacaggaacacaaacatcatctctcgagtaatcttccctagtaactctgagt |
108 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52170674 |
gacatcatcataaagtttaaacaaagtgctattgaatgtgatgttgtcgacaggaacacaaacatcatctctcgagtaatcttccctagtaactctgagc |
52170575 |
T |
|
| Q |
109 |
ttctgtgttgaattgtcccattcaagaatactgtatttcaagaaagaatcatccattgttaacttggggacactgtcctcacatgtgagttccatattag |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52170574 |
ttctgtgttgaattgtcccattcaagaatactgtatttcaagaaagaatcatccgttgttaacttggggacactgtcctcacatgtgagttccatattag |
52170475 |
T |
|
| Q |
209 |
gatcatcattcacaccgcaatactttcctctatttcctccccagaacggatacttgagatttgtgatgttgctactttcgcagataaaagcgtcgttgca |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52170474 |
gatcatcattcacaccgcaatactttcctctatttcctcccctgaacggatacttgagatttgtgatgttgctactttcgcagataaaagcgtcgttgca |
52170375 |
T |
|
| Q |
309 |
gttcgtgtgttggatatcatcattctcacagagacatgatggaaaattggtgattgagatcatcaaaagtgctagaacaaacaagttcattcttgtccta |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
52170374 |
gttcgtgtgttggatatcatcattctcacagagacatgatggaaaattggtgattgagatcatcaaaagtgctagaacaaacaagttcattcttgcccta |
52170275 |
T |
|
| Q |
409 |
gaacaaagaagtgtgaataatagggtttgttttggtgagaaatagacagtgatacaccaagtcaaggagatgctaaaaagggaaattttggtccttgact |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52170274 |
gaacaaagaagtgtgaataatagggtttgttttggtgagaaatagacagtgatacaccaagtcaaggagatgctaaaaagggaaattttggtccttgact |
52170175 |
T |
|
| Q |
509 |
aacacggtatagagaagttttcgctccaaaagagcaatgtgaatatat |
556 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
52170174 |
aacacggtatagagaagttttcgcttcaaaagagcaatgtgaatatat |
52170127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 2e-47; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 99 - 382
Target Start/End: Original strand, 31610369 - 31610646
Alignment:
| Q |
99 |
aactctgagtttctgtgttgaattgtcccattcaagaatactgtatttcaagaaagaatcatccattgttaacttggggacactgtcctcacatgtgagt |
198 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||||||||| |||||| | ||| | ||||||| ||| |||||||| | || ||| ||| |
|
|
| T |
31610369 |
aactctgagtctctgtgttgtattgtcccattcaagaatacggtatttgaccaaatta------attgttatcttagggacacttccttcgcatacgagc |
31610462 |
T |
|
| Q |
199 |
tccatattaggatcatcattcacaccgcaatactttcctctatttcctccccagaacggatacttgagatttgtgatgttgctactttcgcagataaaag |
298 |
Q |
| |
|
||||| ||||||||| || ||||| ||||||||| |||| |||||||||||| ||||||||||||| |||| |||| |||||||||||||| |||||| |
|
|
| T |
31610463 |
tccatcttaggatcaccagaaacaccacaatacttttctctgtttcctccccagtacggatacttgaggtttgagatgctgctactttcgcaggtaaaag |
31610562 |
T |
|
| Q |
299 |
cgtcgttgcagttcgtgtgttggatatcatcattctcacagagacatgatggaaaattggtgattgagatcatcaaaagtgcta |
382 |
Q |
| |
|
||| ||||||||| ||||||||||||| || || ||||| ||||||| ||||| |||||||||||||||||||||| ||||| |
|
|
| T |
31610563 |
cgttgttgcagttagtgtgttggatattattgttgtcacaaagacatgttggaattttggtgattgagatcatcaaaactgcta |
31610646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 83 - 146
Target Start/End: Original strand, 31621194 - 31621257
Alignment:
| Q |
83 |
agtaatcttccctagtaactctgagtttctgtgttgaattgtcccattcaagaatactgtattt |
146 |
Q |
| |
|
||||||| || |||| ||| ||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
31621194 |
agtaatcgtctctagcgactgtgagtttctgtgttgtattgtcccattcaagaatacggtattt |
31621257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 83 - 146
Target Start/End: Original strand, 31636189 - 31636252
Alignment:
| Q |
83 |
agtaatcttccctagtaactctgagtttctgtgttgaattgtcccattcaagaatactgtattt |
146 |
Q |
| |
|
||||||| || |||| ||| ||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
31636189 |
agtaatcgtctctagcgactgtgagtttctgtgttgtattgtcccattcaagaatacggtattt |
31636252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 220 - 281
Target Start/End: Original strand, 31597456 - 31597517
Alignment:
| Q |
220 |
acaccgcaatactttcctctatttcctccccagaacggatacttgagatttgtgatgttgct |
281 |
Q |
| |
|
||||| ||||| |||||||||||| |||||||||| ||||| | ||||||||||||||||| |
|
|
| T |
31597456 |
acaccacaataatttcctctattttctccccagaatggatattcaagatttgtgatgttgct |
31597517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 310
Target Start/End: Original strand, 31621351 - 31621415
Alignment:
| Q |
246 |
tccccagaacggatacttgagatttgtgatgttgctactttcgcagataaaagcgtcgttgcagt |
310 |
Q |
| |
|
||||||||| ||||||||||| ||||||||| |||||||| |||| |||||| |||||||||| |
|
|
| T |
31621351 |
tccccagaatggatacttgaggtttgtgatgctgctacttccgcattcaaaagcttcgttgcagt |
31621415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 310
Target Start/End: Original strand, 31636346 - 31636410
Alignment:
| Q |
246 |
tccccagaacggatacttgagatttgtgatgttgctactttcgcagataaaagcgtcgttgcagt |
310 |
Q |
| |
|
||||||||| ||||||||||| ||||||||| |||||||| |||| |||||| |||||||||| |
|
|
| T |
31636346 |
tccccagaatggatacttgaggtttgtgatgctgctacttccgcattcaaaagcttcgttgcagt |
31636410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University