View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4772_low_5 (Length: 410)
Name: NF4772_low_5
Description: NF4772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4772_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Complemental strand, 40106541 - 40106144
Alignment:
| Q |
1 |
gctataaaatatgaaactattataattaggatttaattcatatacattgcaagtgtaatgagattttacactgacaatcaactataactgtcagatcatt |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40106541 |
gctataaaatatgaaac-attataattaggatttaattcatatacattgcaagtgtaatgagattttacactgacaatcaactataactgtcagatcatt |
40106443 |
T |
|
| Q |
101 |
agaaatgtttaacttttatcataacacttctaaagtcacatacacatttggtttatgatttggtgacagtatatgaaaattaaactcttataattattat |
200 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40106442 |
agaaatgtt-aacttttatcataacacttctaaagtcacatgcacatttggtttatgatttggtgacagtatatgaaaattaaactcttataattattat |
40106344 |
T |
|
| Q |
201 |
agttcctatttcaatttca------attttacacaaatgagacaacaaaaatacactacttctgttaaatttagaggttgcaaacaaacatagttcaaat |
294 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40106343 |
agttcctatttcaatttcaatttcaattttacacaaatgagacaacaaaaatacactacttctgttaaatttagaggttgcaaacaaacatagttcaaat |
40106244 |
T |
|
| Q |
295 |
agagattaattttagaaaagnnnnnnnntgcaggaaaaatttaaaccaaagttatgatcacaacaagactagaataaacatctaaagtgaatcatgaaag |
394 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40106243 |
agagattaattttagaaaagaaaaaaaatgcaggaaaaatttaaaccaaagttatgatcaaaacaagactagaataaacatctaaagtgaatcatgaaag |
40106144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 124
Target Start/End: Complemental strand, 17213853 - 17213758
Alignment:
| Q |
29 |
ggatttaattcatatacattgcaagtgtaatgagattttacactgacaatcaactataactgtcagatcattagaaatgtttaacttttatcataa |
124 |
Q |
| |
|
||||||||||||||||||||| ||||||| || | |||| |||| ||||||| |||| ||||| ||| ||| ||| |||| ||||| ||||||| |
|
|
| T |
17213853 |
ggatttaattcatatacattgtcagtgtaaagatagtttatactgtcaatcaatcataattgtcaaatcgttaaaaacgttttactttgatcataa |
17213758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 140
Target Start/End: Original strand, 13166072 - 13166149
Alignment:
| Q |
64 |
ttttacactgacaatcaactataactgtcagatcattagaaatgtttaacttttatcataa-cacttctaaagtcaca |
140 |
Q |
| |
|
|||||||| | ||||||| |||||||||| ||| ||||||| ||| ||||||||||||| ||||||||||| |||| |
|
|
| T |
13166072 |
ttttacaccgtcaatcaataataactgtcaaatcgttagaaacatttgacttttatcataatcacttctaaagacaca |
13166149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 125
Target Start/End: Complemental strand, 39353248 - 39353198
Alignment:
| Q |
75 |
caatcaactataactgtcagatcattagaaatgtttaacttttatcataac |
125 |
Q |
| |
|
||||||| ||||||||||||| |||||||||| ||||||||| || ||||| |
|
|
| T |
39353248 |
caatcaattataactgtcagaccattagaaatatttaactttaattataac |
39353198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 140
Target Start/End: Original strand, 35169915 - 35170024
Alignment:
| Q |
32 |
tttaattcatatacattgcaagtgtaatgagattttacactgacaatcaactataactgtcagatcattagaaatgtttaacttttatcataac-acttc |
130 |
Q |
| |
|
||||||||||||| | || || ||| | || ||||||||||| ||||||| | ||| || |||| |||| | |||||| ||||| |||||||| ||||| |
|
|
| T |
35169915 |
tttaattcatatatactgtaactgttaagatattttacactgtcaatcaattgtaatcgttagattattaaagatgtttgactttaatcataactacttc |
35170014 |
T |
|
| Q |
131 |
taaagtcaca |
140 |
Q |
| |
|
|||||||||| |
|
|
| T |
35170015 |
taaagtcaca |
35170024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 21570830 - 21570887
Alignment:
| Q |
84 |
ataactgtcagatcattagaaatgtttaacttttatcataac-acttctaaagtcaca |
140 |
Q |
| |
|
||||| |||| || ||||||||||||| ||||||||||| || ||||||||||||||| |
|
|
| T |
21570830 |
ataaccgtcacataattagaaatgtttgacttttatcatgacgacttctaaagtcaca |
21570887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University