View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4773-Insertion-1 (Length: 750)
Name: NF4773-Insertion-1
Description: NF4773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4773-Insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 8 - 289
Target Start/End: Original strand, 49568331 - 49568612
Alignment:
| Q |
8 |
gatattaccctccaacagcactttagaaagctctttaatcattcttaaaatacatcattaatagacaaaaatttaattatcatgtagtgatgatggaata |
107 |
Q |
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| T |
49568331 |
gatattaccctccaacagcactttagaaagctctttaatcattctttatatacatcattaatagacaaaaatttaattatcatgtagtgatgatggaata |
49568430 |
T |
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| Q |
108 |
aaagtgtacatatatgattgatcgatcaccaagtaagtattttctcaagcgtgtagaaagaaaactttacatgattacatctatcaaaag-nnnnnnnnn |
206 |
Q |
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| T |
49568431 |
aaagtgtacatatatgattgatcgatcaccaagtaagtattttctcaagcgtgtagaaag-aaactttacatgattacatctatcaaaagaacaaaaaaa |
49568529 |
T |
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| Q |
207 |
nctttacaataatataggatcacacttgattttaaga-gtgtgttatttgaataattatttgcatgacaacttacgagtcaact |
289 |
Q |
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| T |
49568530 |
actttacaat-atataggatcacacttgattttaataggtgtgttatttgaataattatttgcatgacaacttacgaatcaact |
49568612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 519 - 681
Target Start/End: Original strand, 49568842 - 49569004
Alignment:
| Q |
519 |
gctgagacaaatgatatttcatgaaattagttatattcgattaagtatctataatttttgaccaaaatatagttcgaaaatgttgtccttgaaatgaagt |
618 |
Q |
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| T |
49568842 |
gctgagacaaatgatatttcatgaaattatttatattcgattaagtatctataatttttgaccaaaatatagttcgaaaatgttgtccttgaaatgaagt |
49568941 |
T |
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| Q |
619 |
agaaaagaggaagcttataaaatttgaaataccagtgttcataacctacaaaaattggccttt |
681 |
Q |
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| T |
49568942 |
agaaaagaggaagcttataaaatttgaaataccagtgtttataacctacaaaaattgtccttt |
49569004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 404 - 452
Target Start/End: Original strand, 49568727 - 49568775
Alignment:
| Q |
404 |
ttatacaaatattattcctttaatttttatctcccctcgcggtcattcg |
452 |
Q |
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| T |
49568727 |
ttatacaaatattattcctctaatttttatctccccttgcagtcattcg |
49568775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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