View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4773-Insertion-2 (Length: 720)
Name: NF4773-Insertion-2
Description: NF4773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4773-Insertion-2 |
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Alignment Details
Target: chr5 (Bit Score: 536; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 106 - 692
Target Start/End: Original strand, 4212905 - 4213488
Alignment:
| Q |
106 |
atcttatatgtatcatttcttgttgagaaccaagttaaatttatgaccggaacaattcttttcttgattaagctagttttgattattacggagatttaga |
205 |
Q |
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| T |
4212905 |
atcttatatgtatcatttcttgttgagaaccaagttaaatttatgaccggaacaattcttttcttgattaagctagttttgattattacggagatttaga |
4213004 |
T |
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| Q |
206 |
agaattaggttaatgaaatcattgtattttttggaataattcattgattacaattttacaagaactagttttacaattgtgttgaattaatgattgtagg |
305 |
Q |
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| T |
4213005 |
agaattaggttaatgaaatcattgaattttttggaataattcattgattacaattt-acgagaactagttttacaattgtgttgaattaatgattgtagg |
4213103 |
T |
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| Q |
306 |
tttatttgaccttgtgttttgctgtggccgctgctgctgttggagcttacctccatgtccttctcaacattggtggtattcttacggcaattgcgtgctt |
405 |
Q |
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| T |
4213104 |
tttatttgaccttgtgttttgctgtggccgctgctgctgttggagcttacctccatgtccttctcaacattggtggtattcttaccgcaattgcgtgctt |
4213203 |
T |
|
| Q |
406 |
gggaattagtgtttggttactctcaacacctccttttgaagaggtatgaatttctgttcctttttgtagctttttgttctttttatggtttcgcggtttc |
505 |
Q |
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| T |
4213204 |
gggaattagtgtttggttactctcaacacctccttttgaagaggtatgaatttctgttcctttttgtagctttttgttctttttatggtttcgcggtttc |
4213303 |
T |
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| Q |
506 |
aattgttaattattactaacctgtttgtttctttttatggtatacagcgaaagaggttgactttgttgatggccgcggcactgtttcagggtgcctctat |
605 |
Q |
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| T |
4213304 |
aattgttaattattactaacctgtttgtttctttttatggtatacagcgaaagaggttgactttgttgatggccgcggcactgtttcagggtgcctctat |
4213403 |
T |
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| Q |
606 |
tggacccttgattgatttcgctattc-agtcgatccaaggtatgcttttcattatatttggtggtttgctggatgcattgggatcttt |
692 |
Q |
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| T |
4213404 |
tggacccttgattgatttcgctattcaagtcgatccaaggtatgc-tttcattatattt-gtggtttgct-gatgcattgggatcttt |
4213488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 118; Significance: 8e-60; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 303 - 448
Target Start/End: Complemental strand, 31161477 - 31161332
Alignment:
| Q |
303 |
aggtttatttgaccttgtgttttgctgtggccgctgctgctgttggagcttacctccatgtccttctcaacattggtggtattcttacggcaattgcgtg |
402 |
Q |
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| T |
31161477 |
aggtttatttgaccttgtgttttgttgtagtcgctgctgctattggagcttacctccatgtccttctcaacattggtggtattcttaccacaattgcgtg |
31161378 |
T |
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| Q |
403 |
cttgggaattagtgtttggttactctcaacacctccttttgaagag |
448 |
Q |
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| T |
31161377 |
cttgggaattagtgtttggttactctcaacacctccttctgaagag |
31161332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 551 - 642
Target Start/End: Complemental strand, 31161333 - 31161241
Alignment:
| Q |
551 |
agcgaaagaggttgactttgttgatggccgcggcactgtttcagggtgcctctattggacccttgattgatttcgctattc-agtcgatccaa |
642 |
Q |
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| T |
31161333 |
agcgaatgaggttgactttgttgatggccgcgacactgtttcagggtgcctctgttggacccttgattgatttctctattcaagtcgatccaa |
31161241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 558 - 630
Target Start/End: Complemental strand, 41278220 - 41278148
Alignment:
| Q |
558 |
gaggttgactttgttgatggccgcggcactgtttcagggtgcctctattggacccttgattgatttcgctatt |
630 |
Q |
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| T |
41278220 |
gaggttgtctttgttgatggcttcggctttgtttcagggtgcctctattggacccttgattgatttggctatt |
41278148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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