View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4773-Insertion-3 (Length: 629)

Name: NF4773-Insertion-3
Description: NF4773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4773-Insertion-3
NF4773-Insertion-3
[»] chr2 (29 HSPs)
chr2 (166-375)||(19541055-19541264)
chr2 (162-372)||(18236192-18236403)
chr2 (247-376)||(17415049-17415178)
chr2 (166-369)||(31262017-31262219)
chr2 (166-378)||(30998789-30999002)
chr2 (257-376)||(14921924-14922044)
chr2 (166-372)||(17152171-17152379)
chr2 (96-261)||(27917985-27918162)
chr2 (170-376)||(34063726-34063938)
chr2 (168-291)||(21849045-21849167)
chr2 (163-372)||(24047397-24047608)
chr2 (165-306)||(17240813-17240951)
chr2 (253-373)||(1732656-1732777)
chr2 (174-376)||(18818723-18818931)
chr2 (163-289)||(35707818-35707945)
chr2 (210-306)||(39730509-39730605)
chr2 (224-376)||(27417148-27417302)
chr2 (166-290)||(21505111-21505236)
chr2 (166-296)||(22388724-22388849)
chr2 (96-168)||(29647653-29647725)
chr2 (251-306)||(15454495-15454550)
chr2 (253-370)||(22511050-22511169)
chr2 (169-376)||(24187987-24188198)
chr2 (169-273)||(32276503-32276607)
chr2 (337-376)||(22525705-22525744)
chr2 (241-295)||(34077031-34077085)
chr2 (166-268)||(35031720-35031822)
chr2 (166-259)||(21843006-21843099)
chr2 (171-252)||(28278434-28278515)
[»] chr1 (34 HSPs)
chr1 (163-376)||(26854205-26854417)
chr1 (163-372)||(31313567-31313777)
chr1 (166-376)||(52271130-52271341)
chr1 (171-372)||(26102080-26102282)
chr1 (166-372)||(15298760-15298966)
chr1 (166-376)||(30675502-30675713)
chr1 (171-306)||(18795204-18795339)
chr1 (167-376)||(19257691-19257899)
chr1 (518-602)||(50860387-50860470)
chr1 (163-376)||(11769879-11770094)
chr1 (174-372)||(21548674-21548873)
chr1 (178-372)||(27461070-27461266)
chr1 (409-469)||(50860467-50860527)
chr1 (211-376)||(25727794-25727961)
chr1 (211-376)||(25736202-25736369)
chr1 (163-288)||(18391097-18391222)
chr1 (166-373)||(25126498-25126706)
chr1 (166-376)||(25494374-25494576)
chr1 (166-376)||(26657494-26657705)
chr1 (166-355)||(34381726-34381919)
chr1 (166-287)||(50047199-50047321)
chr1 (174-368)||(15416866-15417062)
chr1 (167-376)||(18300888-18301099)
chr1 (236-376)||(30781848-30781989)
chr1 (171-289)||(8247630-8247749)
chr1 (225-295)||(25730538-25730609)
chr1 (166-260)||(12810340-12810434)
chr1 (330-376)||(25665655-25665701)
chr1 (163-252)||(19884187-19884276)
chr1 (321-376)||(9328342-9328396)
chr1 (175-268)||(13807747-13807840)
chr1 (264-372)||(25373862-25373971)
chr1 (163-278)||(25266329-25266445)
chr1 (96-160)||(52271359-52271423)
[»] chr7 (37 HSPs)
chr7 (96-376)||(30405531-30405823)
chr7 (166-376)||(24596889-24597100)
chr7 (163-372)||(5312675-5312885)
chr7 (177-369)||(12358655-12358847)
chr7 (166-296)||(3268932-3269062)
chr7 (166-376)||(23124918-23125130)
chr7 (166-335)||(20461574-20461744)
chr7 (166-372)||(1074470-1074678)
chr7 (163-372)||(18496580-18496790)
chr7 (166-296)||(17881465-17881595)
chr7 (130-295)||(7372532-7372708)
chr7 (166-376)||(29544537-29544749)
chr7 (168-306)||(7815343-7815482)
chr7 (166-373)||(7142116-7142324)
chr7 (191-306)||(8308988-8309103)
chr7 (166-373)||(20470698-20470907)
chr7 (210-376)||(9801760-9801927)
chr7 (321-376)||(21545712-21545767)
chr7 (166-268)||(1255208-1255310)
chr7 (165-259)||(21545803-21545897)
chr7 (166-290)||(4828809-4828931)
chr7 (235-295)||(7326838-7326898)
chr7 (96-168)||(9755735-9755807)
chr7 (210-364)||(9761313-9761468)
chr7 (252-307)||(3487321-3487376)
chr7 (166-260)||(37144938-37145032)
chr7 (253-368)||(22532538-22532653)
chr7 (232-279)||(2353229-2353276)
chr7 (166-288)||(4977794-4977917)
chr7 (321-376)||(7494871-7494925)
chr7 (321-376)||(20017128-20017182)
chr7 (96-162)||(4828726-4828792)
chr7 (90-168)||(9800526-9800603)
chr7 (233-295)||(23804331-23804392)
chr7 (329-393)||(20446384-20446446)
chr7 (191-263)||(2632436-2632508)
chr7 (324-372)||(10253629-10253677)
[»] chr3 (24 HSPs)
chr3 (170-386)||(11474868-11475086)
chr3 (166-369)||(21829025-21829229)
chr3 (166-392)||(26387715-26387941)
chr3 (166-334)||(26297767-26297934)
chr3 (166-376)||(8402436-8402647)
chr3 (163-373)||(23908159-23908370)
chr3 (214-376)||(18474236-18474399)
chr3 (177-376)||(28422482-28422681)
chr3 (166-376)||(19219096-19219308)
chr3 (178-278)||(30493249-30493349)
chr3 (166-371)||(19285118-19285322)
chr3 (197-310)||(26797201-26797313)
chr3 (130-279)||(19545967-19546124)
chr3 (166-289)||(13911283-13911407)
chr3 (210-376)||(10341857-10342016)
chr3 (188-369)||(5632435-5632608)
chr3 (317-376)||(19543009-19543068)
chr3 (168-295)||(33577754-33577881)
chr3 (168-337)||(27374377-27374546)
chr3 (166-290)||(2729590-2729715)
chr3 (224-288)||(27415244-27415309)
chr3 (257-373)||(26418829-26418946)
chr3 (166-218)||(12409476-12409528)
chr3 (144-204)||(18065812-18065872)
[»] scaffold0190 (1 HSPs)
scaffold0190 (166-376)||(11583-11794)
[»] chr4 (30 HSPs)
chr4 (225-376)||(31859786-31859938)
chr4 (166-362)||(26159774-26159971)
chr4 (224-375)||(17187251-17187401)
chr4 (166-373)||(21077251-21077459)
chr4 (163-306)||(10576468-10576611)
chr4 (225-349)||(29437548-29437673)
chr4 (224-376)||(13064502-13064655)
chr4 (171-376)||(23353646-23353847)
chr4 (166-349)||(9288228-9288412)
chr4 (233-372)||(33519115-33519255)
chr4 (166-378)||(19601816-19602029)
chr4 (166-297)||(21167747-21167878)
chr4 (174-295)||(13275712-13275833)
chr4 (246-295)||(13206643-13206692)
chr4 (213-376)||(15192268-15192432)
chr4 (174-286)||(17339790-17339902)
chr4 (166-373)||(34864184-34864388)
chr4 (166-280)||(22119664-22119778)
chr4 (213-376)||(17026582-17026746)
chr4 (163-295)||(27302793-27302925)
chr4 (163-372)||(46647211-46647420)
chr4 (251-376)||(12111213-12111337)
chr4 (249-291)||(12243698-12243740)
chr4 (166-295)||(25315198-25315328)
chr4 (166-280)||(10320201-10320316)
chr4 (235-286)||(30624953-30625004)
chr4 (168-289)||(4732770-4732891)
chr4 (318-375)||(5906649-5906706)
chr4 (323-376)||(47024651-47024703)
chr4 (459-503)||(32650737-32650781)
[»] chr5 (36 HSPs)
chr5 (168-391)||(20694660-20694884)
chr5 (166-361)||(24410830-24411026)
chr5 (166-372)||(19331529-19331735)
chr5 (166-310)||(19763845-19763987)
chr5 (166-376)||(7742755-7742966)
chr5 (166-372)||(16634064-16634272)
chr5 (233-368)||(26070559-26070695)
chr5 (166-372)||(11274219-11274428)
chr5 (166-371)||(20083483-20083691)
chr5 (166-376)||(23157689-23157885)
chr5 (233-291)||(25367679-25367737)
chr5 (199-329)||(30790827-30790957)
chr5 (171-290)||(25594664-25594784)
chr5 (171-260)||(25680619-25680708)
chr5 (170-376)||(17027549-17027756)
chr5 (223-293)||(11997863-11997934)
chr5 (210-373)||(18178162-18178328)
chr5 (166-268)||(18222511-18222613)
chr5 (248-373)||(22643793-22643919)
chr5 (213-376)||(26329955-26330117)
chr5 (166-376)||(12339900-12340111)
chr5 (166-288)||(24841771-24841894)
chr5 (166-280)||(15697319-15697433)
chr5 (130-285)||(16603590-16603757)
chr5 (191-287)||(29150882-29150977)
chr5 (321-376)||(18452697-18452752)
chr5 (321-376)||(30072290-30072345)
chr5 (166-260)||(17382038-17382132)
chr5 (95-168)||(25367554-25367627)
chr5 (324-376)||(19763771-19763823)
chr5 (250-306)||(24279582-24279638)
chr5 (250-306)||(24382576-24382632)
chr5 (166-373)||(16622565-16622764)
chr5 (166-268)||(15205661-15205763)
chr5 (166-260)||(24517372-24517466)
chr5 (225-289)||(22754971-22755036)
[»] chr8 (29 HSPs)
chr8 (189-376)||(30543802-30543991)
chr8 (247-386)||(13583395-13583535)
chr8 (166-381)||(29291789-29292004)
chr8 (163-368)||(14424706-14424912)
chr8 (168-372)||(27097691-27097896)
chr8 (166-369)||(5153776-5153980)
chr8 (166-372)||(6888082-6888286)
chr8 (166-376)||(32239305-32239517)
chr8 (166-373)||(28291989-28292196)
chr8 (171-372)||(28260178-28260381)
chr8 (237-376)||(11437508-11437649)
chr8 (166-296)||(10867006-10867136)
chr8 (225-381)||(31436556-31436704)
chr8 (188-307)||(28074554-28074672)
chr8 (174-376)||(30850985-30851188)
chr8 (321-376)||(28901235-28901289)
chr8 (166-372)||(35135310-35135519)
chr8 (249-310)||(12357574-12357635)
chr8 (249-310)||(12358702-12358763)
chr8 (173-376)||(28902114-28902318)
chr8 (166-268)||(5570136-5570238)
chr8 (233-373)||(16052165-16052307)
chr8 (166-289)||(16054312-16054436)
chr8 (210-375)||(24696643-24696810)
chr8 (171-296)||(12774809-12774935)
chr8 (241-286)||(39438474-39438519)
chr8 (189-270)||(41505530-41505611)
chr8 (166-262)||(13081938-13082034)
chr8 (226-274)||(31232134-31232182)
[»] chr6 (24 HSPs)
chr6 (210-375)||(26499733-26499899)
chr6 (266-376)||(33638390-33638501)
chr6 (226-306)||(9396563-9396642)
chr6 (166-372)||(14924307-14924514)
chr6 (166-374)||(14768163-14768365)
chr6 (166-306)||(32930429-32930569)
chr6 (224-372)||(16439534-16439683)
chr6 (213-368)||(9943043-9943199)
chr6 (232-359)||(12972287-12972415)
chr6 (163-376)||(17860334-17860548)
chr6 (321-376)||(33638260-33638315)
chr6 (225-306)||(24617588-24617669)
chr6 (166-287)||(26512753-26512874)
chr6 (166-287)||(26517869-26517990)
chr6 (163-267)||(20495790-20495893)
chr6 (231-376)||(24507328-24507474)
chr6 (234-290)||(22559186-22559241)
chr6 (321-376)||(30355491-30355546)
chr6 (166-288)||(17198737-17198852)
chr6 (163-260)||(30355341-30355437)
chr6 (174-269)||(1755555-1755650)
chr6 (168-215)||(24507632-24507679)
chr6 (236-288)||(15998599-15998652)
chr6 (241-286)||(23946819-23946864)
[»] scaffold0188 (1 HSPs)
scaffold0188 (224-376)||(26840-26994)
[»] scaffold0171 (1 HSPs)
scaffold0171 (176-375)||(21425-21626)
[»] scaffold0043 (1 HSPs)
scaffold0043 (166-373)||(58763-58976)
[»] scaffold0065 (2 HSPs)
scaffold0065 (231-376)||(12327-12473)
scaffold0065 (168-215)||(12122-12169)
[»] scaffold0011 (1 HSPs)
scaffold0011 (269-376)||(228072-228179)
[»] scaffold0337 (2 HSPs)
scaffold0337 (231-376)||(1891-2037)
scaffold0337 (168-215)||(1686-1733)
[»] scaffold1026 (1 HSPs)
scaffold1026 (166-376)||(1715-1930)
[»] scaffold0650 (1 HSPs)
scaffold0650 (269-376)||(5655-5762)
[»] scaffold1149 (1 HSPs)
scaffold1149 (338-375)||(1978-2015)
[»] scaffold0185 (1 HSPs)
scaffold0185 (331-376)||(2684-2729)
[»] scaffold0386 (1 HSPs)
scaffold0386 (224-295)||(13038-13110)


Alignment Details
Target: chr2 (Bit Score: 99; Significance: 1e-48; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 166 - 375
Target Start/End: Original strand, 19541055 - 19541264
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    |||||| ||||||||||| |||||||||||||  ||||| | | ||| ||||| |||  |||||| ||||||||| ||||| ||||||||||||||||||    
T  19541055 agttgttaatggtttgaggaactttttgtatttatttcaatcgagtcattgtaattcagttttatcctaaatcatgcaactccataggtgttttgagtct 19541154  T
Q  266 ttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggagg-ttgagaatatgaagattgaagttcaatggttcttataaggtatttgaaga 364  Q
    || |||||||||||| |||||||||||||||  |||||||||||| ||| | ||| |||||||||||||||  ||||||||||||||||||| || ||||    
T  19541155 ttctagtgagaaatcatgtaaatcggcaaaataagacatcaagtgaaggatcgaggatatgaagattgaagaccaatggttcttataaggta-ttaaaga 19541253  T
Q  365 caatacaaagt 375  Q
    |||||||||||    
T  19541254 caatacaaagt 19541264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 162 - 372
Target Start/End: Complemental strand, 18236403 - 18236192
Alignment:
Q  162 tagaagttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttga 261  Q
    ||||||||||||||||||||||||||  ||| |||| |||||||| | || ||| || ||| |||||||  |||||||| ||||| |||| || ||||||    
T  18236403 tagaagttgtcaatggtttgagaaacaatttatattgttttcattcgagttgttataattcacttttatcttaaatcatgcaactccataagtattttga 18236304  T
Q  262 gtctttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggaggttga-gaatatgaagattgaagttcaatggttcttataaggtatttg 360  Q
    ||||||||||||||||||| ||||| |||||||||  ||||||||  || ||| | |  ||||||||||||||||  |||||||||||| |||||  |||    
T  18236303 gtctttttagtgagaaatcatgtaactcggcaaaacaagacatcacatgaaggatcacaaatatgaagattgaaggccaatggttcttagaaggttgttg 18236204  T
Q  361 aagacaatacaa 372  Q
    ||||||||||||    
T  18236203 aagacaatacaa 18236192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 247 - 376
Target Start/End: Complemental strand, 17415178 - 17415049
Alignment:
Q  247 tcataggtgttttgagtctttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggagg-ttgagaatatgaagattgaagttcaatggtt 345  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||| ||| | ||| | ||||||||||||  |||||||||    
T  17415178 tcataggtgttttgagtctttttagtgagaaatcgtgtaaatcggcaaaacaagacatcacgtgaaggatcgaggacatgaagattgaa-atcaatggtt 17415080  T
Q  346 cttataaggtatttgaagacaatacaaagtg 376  Q
    ||||  || ||||||||||||| | ||||||    
T  17415079 cttaggagttatttgaagacaacaaaaagtg 17415049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 166 - 369
Target Start/End: Original strand, 31262017 - 31262219
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    ||||||||||||||| | |||| ||||||||||||||| ||   | ||||||| |||  |||||| | ||| ||| |||||||| ||||||||| |||||    
T  31262017 agttgtcaatggtttaacaaacattttgtattattttctttctggacgttgtaattcagttttatcc-aaaccatgcaacttcacaggtgttttaagtct 31262115  T
Q  266 ttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggaggttgagaatatgaagattgaagttcaatggttcttataaggtatttgaagac 365  Q
    |||||||||||| || | ||||| |||||||  ||||| ||  || || | ||| ||||||||||||||| | |||||||||||  |||| |||||||||    
T  31262116 ttttagtgagaattcatctaaattggcaaaacaagacaccacatgaagatcgaggatatgaagattgaagattaatggttcttagtaggtctttgaagac 31262215  T
Q  366 aata 369  Q
    ||||    
T  31262216 aata 31262219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 166 - 378
Target Start/End: Original strand, 30998789 - 30999002
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    |||||||||||||||||| ||| | ||||||| |||||| ||| ||||||||| |||  |||||| ||| ||||||||||| |||||||||||||||| |    
T  30998789 agttgtcaatggtttgaggaacatattgtattgttttcacttgagtcgttgtacttcagttttatcctagatcatacaactccataggtgttttgagtgt 30998888  T
Q  266 ttt-tagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggagg-ttgagaatatgaagattgaagttcaatggttcttataaggtatttgaag 363  Q
    ||| ||||||  | |  ||||||||| ||||   ||| |||||||| ||| |  || ||||| | ||||||| |||| |||||||| |||||  ||||||    
T  30998889 tttgtagtgaagagtgatgtaaatcgacaaatcaagatatcaagtgaaggatcaaggatatgta-attgaagatcaagggttcttagaaggttgttgaag 30998987  T
Q  364 acaatacaaagtgga 378  Q
    |||||||||||||||    
T  30998988 acaatacaaagtgga 30999002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 257 - 376
Target Start/End: Complemental strand, 14922044 - 14921924
Alignment:
Q  257 tttgagtctttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggaggtt-gagaatatgaagattgaagttcaatggttcttataaggt 355  Q
    ||||||||||||| |||||||||| |||||||||| ||||  | |||||| ||| ||  | ||| ||||||||||||||||||||||||||||| |||||    
T  14922044 tttgagtctttttcgtgagaaatcatgtaaatcggaaaaacaatacatcatgtgaagaatcgaggatatgaagattgaagttcaatggttcttagaaggt 14921945  T
Q  356 atttgaagacaatacaaagtg 376  Q
    || || |||||||||||||||    
T  14921944 atatgtagacaatacaaagtg 14921924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 166 - 372
Target Start/End: Original strand, 17152171 - 17152379
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgag-tc 264  Q
    |||||||||||||||||| ||  |||||||||||||||||| | ||||||||| ||  |||||||  ||| |||| |||||   || |||||||||| |     
T  17152171 agttgtcaatggtttgaggaatattttgtattattttcattcgagtcgttgtaattaacttttatcgtaattcatgcaactctgtaagtgttttgagttt 17152270  T
Q  265 tttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggagg-ttgagaatatgaagattgaagttcaatggttcttataaggtatttgaag 363  Q
    |||||||| ||||||| |||||||||||||||  |||||||  ||| ||| |  || ||||||||| ||||  | ||||||||||| ||||| |||||||    
T  17152271 tttttagtaagaaatcatgtaaatcggcaaaacaagacatcgtgtgaaggatcaaggatatgaagaatgaatatgaatggttcttagaaggtttttgaag 17152370  T
Q  364 acaatacaa 372  Q
    | |||||||    
T  17152371 ataatacaa 17152379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 96 - 261
Target Start/End: Complemental strand, 27918162 - 27917985
Alignment:
Q  96 tgatggaataacattagatatttttagctatctgtttagtgtatttccttgcatttgaaggcaaattagaa-------------gttgtcaatggtttga 182  Q
    ||||||||||||||  ||||||||||||||| | |||| |||| ||| |||||||||||||||||||||||             ||||||| ||||||||    
T  27918162 tgatggaataacatatgatatttttagctatgt-tttaatgtaattctttgcatttgaaggcaaattagaattcaactataggagttgtcattggtttga 27918064  T
Q  183 gaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttga 261  Q
    | ||| ||  ||||| |||||||||| ||||||||| ||| ||||||| ||||||||| ||||| ||||||||||||||    
T  27918063 ggaacgttgggtattgttttcatttgagtcgttgtaattcacttttatactaaatcatgcaactccataggtgttttga 27917985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 170 - 376
Target Start/End: Complemental strand, 34063938 - 34063726
Alignment:
Q  170 gtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtcttttt 269  Q
    |||||||||||| | ||||||||||||| |||||||| | || |||||| ||| || |||| ||||||||| ||||| || | ||||||||||| |||||    
T  34063938 gtcaatggtttgtggaactttttgtattgttttcattcgagttgttgtaattcactattatcctaaatcatgcaactccacaagtgttttgagttttttt 34063839  T
Q  270 -----agtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggagg-ttgagaatatgaagattgaagttcaatggttcttataaggtatttgaag 363  Q
         |||||||| || |||||||||||||||  |||||||  ||| ||| | ||  ||||||||||| || ||  |||||| ||| |||  ||||||||    
T  34063838 ttttgagtgagaattcatgtaaatcggcaaaacaagacatcgtgtgaaggatcgacgatatgaagatttaattttgatggttattagaagacatttgaag 34063739  T
Q  364 acaatacaaagtg 376  Q
    |||||||||||||    
T  34063738 acaatacaaagtg 34063726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 168 - 291
Target Start/End: Complemental strand, 21849167 - 21849045
Alignment:
Q  168 ttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtcttt 267  Q
    |||||||||||||||| ||| ||||||||| ||||| |||| ||| ||||| |||  ||||||  |||||||| ||||| ||||||  ||||||||||||    
T  21849167 ttgtcaatggtttgaggaacattttgtattgttttc-tttgagtcattgtaattcagttttatcataaatcatgcaactccataggatttttgagtcttt 21849069  T
Q  268 ttagtgagaaatcgtgtaaatcgg 291  Q
    ||||||||||||  ||||||||||    
T  21849068 ttagtgagaaataatgtaaatcgg 21849045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 163 - 372
Target Start/End: Original strand, 24047397 - 24047608
Alignment:
Q  163 agaagttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgag 262  Q
    |||| ||||||||||||| || ||| ||||||||| |||||||| | ||| ||||| ||| ||||||| |||||| || ||||| ||||||  ||||| |    
T  24047397 agaaattgtcaatggtttaaggaacattttgtattgttttcattcgagtcattgtaattcacttttatcctaaattatgcaactccataggcattttggg 24047496  T
Q  263 tctttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggagg-ttgagaatatgaagattgaagttcaatggttct-tataaggtatttg 360  Q
    || ||||||||||||||| |  ||||||||||||  |||||||   || ||| |  || ||||||||| ||||| |||||||||||  | ||||| | ||    
T  24047497 tcattttagtgagaaatcctacaaatcggcaaaacaagacatcccatgaaggatcaaggatatgaagaatgaagatcaatggttctcaaaaaggtttgtg 24047596  T
Q  361 aagacaatacaa 372  Q
    ||||||||||||    
T  24047597 aagacaatacaa 24047608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 165 - 306
Target Start/End: Complemental strand, 17240951 - 17240813
Alignment:
Q  165 aagttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtc 264  Q
    ||||||||||| ||||||| | |||||| |||| |||||||| | ||||| ||| ||   |||||||||||||||| ||||||||||||||  ||||||     
T  17240951 aagttgtcaatagtttgagga-ctttttctattgttttcattcgagtcgtcgtaatttagttttattctaaatcatgcaacttcataggtg--ttgagtg 17240855  T
Q  265 tttttagtgagaaatcgtgtaaatcggcaaaaagagacatca 306  Q
    |||||||||| ||||| | ||||| |||||||  ||||||||    
T  17240854 tttttagtgaaaaatcatataaattggcaaaacaagacatca 17240813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 253 - 373
Target Start/End: Original strand, 1732656 - 1732777
Alignment:
Q  253 gtgttttgagtctttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggagg-ttgagaatatgaagattgaagttcaatggttcttata 351  Q
    ||||||||||||||||| || ||||||| ||||||| | |||||  ||||||||  || ||| || |||||||||||||||||| |||||| |||||| |    
T  1732656 gtgttttgagtctttttggtaagaaatcatgtaaattgacaaaacaagacatcacatgaaggattaagaatatgaagattgaagatcaatgattcttaga 1732755  T
Q  352 aggtatttgaagacaatacaaa 373  Q
    |  ||||||||| |||||||||    
T  1732756 atatatttgaaggcaatacaaa 1732777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 174 - 376
Target Start/End: Original strand, 18818723 - 18818931
Alignment:
Q  174 atggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtctttttagtg 273  Q
    ||||||| || ||| |||| |||| |||||||||| ||||||| | ||   ||||||  |||||||| ||| | |||||  ||||| |||||||||| ||    
T  18818723 atggtttaaggaacattttatattgttttcatttgagtcgttgaaatttagttttatcataaatcatgcaagtccatagacgttttcagtctttttattg 18818822  T
Q  274 agaaatcgtgtaaatcggcaaaaagagacatcaagtggaggtt------gagaatatgaagattgaagttcaatggttcttataaggtatttgaagacaa 367  Q
    ||||||| |||||||||||||||  || ||||| ||| ||| |       || ||||||| | ||||| | ||||||||||| ||||| |||||||||||    
T  18818823 agaaatcatgtaaatcggcaaaacaaggcatcacgtgaaggattaaggataggatatgaaaactgaagattaatggttcttagaaggtctttgaagacaa 18818922  T
Q  368 tacaaagtg 376  Q
    |||||||||    
T  18818923 tacaaagtg 18818931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 163 - 289
Target Start/End: Original strand, 35707818 - 35707945
Alignment:
Q  163 agaagttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgag 262  Q
    ||||||||||||||||||||||||| | ||||||| |||||| |||  | |||||| |||  |||||| ||| ||   || |||||||||||||||||||    
T  35707818 agaagttgtcaatggtttgagaaacatgttgtattgttttcacttgatttgttgtaattcagttttatcctagattgcacgacttcataggtgttttgag 35707917  T
Q  263 tctttt-tagtgagaaatcgtgtaaatc 289  Q
    | |||| ||||||| |||| ||||||||    
T  35707918 tgttttgtagtgaggaatcatgtaaatc 35707945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 210 - 306
Target Start/End: Original strand, 39730509 - 39730605
Alignment:
Q  210 gtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtctttttagtgagaaatcgtgtaaatcggcaaaaagagacatca 306  Q
    ||||||||| ||| ||||||| ||||||||| |||||    ||||||||||||| |||||||||||||||| | |||||| ||||||  ||||||||    
T  39730509 gtcgttgtaattcacttttatcctaaatcatgcaactctgcaggtgttttgagtatttttagtgagaaatcatataaatcagcaaaacaagacatca 39730605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 224 - 376
Target Start/End: Complemental strand, 27417302 - 27417148
Alignment:
Q  224 cttttattctaaatcatacaacttcataggtgttttgagtctttt-tagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggagg-ttgagaa 321  Q
    ||||||| ||||||||| ||||| |||||||||||| ||| |||| |||||||||||| ||||||||| ||||   ||||||||  || ||| |  |  |    
T  27417302 cttttatcctaaatcatgcaactccataggtgttttaagtgttttgtagtgagaaatcatgtaaatcgacaaatcaagacatcacatgaaggatcaatga 27417203  T
Q  322 tatgaagattgaagttcaatggttcttataaggtatttgaagacaatacaaagtg 376  Q
    ||||||  ||||||  |||||||||| | ||||| |||||| |||||||||||||    
T  27417202 tatgaatgttgaagaccaatggttctaagaaggtttttgaaaacaatacaaagtg 27417148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 166 - 290
Target Start/End: Complemental strand, 21505236 - 21505111
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    |||||||||||||||||| | | | ||||||| |||||| | | ||| || || ||  ||||||| ||||||||| ||||||| ||| |||||||||| |    
T  21505236 agttgtcaatggtttgaggagcatattgtattgttttcactcgagtctttataatttacttttatcctaaatcatgcaacttcttagatgttttgagtgt 21505137  T
Q  266 ttt-tagtgagaaatcgtgtaaatcg 290  Q
    ||| ||||||| |||| |||||||||    
T  21505136 tttgtagtgaggaatcatgtaaatcg 21505111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 166 - 296
Target Start/End: Complemental strand, 22388849 - 22388724
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    ||||||||||  |||||| |||||||| |||| |||||||||| ||| ||||| | |  |||||| || |||||| |||||||||     ||||||||||    
T  22388849 agttgtcaataatttgaggaacttttt-tattgttttcatttgagtcattgtaatccagttttatcctgaatcatgcaacttcatt----ttttgagtct 22388755  T
Q  266 ttttagtgagaaatcgtgtaaatcggcaaaa 296  Q
    ||| ||||||||||| ||||||| |||||||    
T  22388754 tttcagtgagaaatcatgtaaattggcaaaa 22388724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 168
Target Start/End: Complemental strand, 29647725 - 29647653
Alignment:
Q  96 tgatggaataacattagatatttttagctatctgtttagtgtatttccttgcatttgaaggcaaattagaagt 168  Q
    ||||||||||||||  ||| ||||||||||| |  |||||||| ||  |||||||||||||||||||||||||    
T  29647725 tgatggaataacatatgatgtttttagctatgttgttagtgtaattatttgcatttgaaggcaaattagaagt 29647653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 251 - 306
Target Start/End: Complemental strand, 15454550 - 15454495
Alignment:
Q  251 aggtgttttgagtctttttagtgagaaatcgtgtaaatcggcaaaaagagacatca 306  Q
    ||||||||||||| ||||||||||||||||||||||||  ||||||  ||||||||    
T  15454550 aggtgttttgagtttttttagtgagaaatcgtgtaaattagcaaaacaagacatca 15454495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 253 - 370
Target Start/End: Original strand, 22511050 - 22511169
Alignment:
Q  253 gtgttttgagtctttt-tagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggagg-ttgagaatatgaagattgaagttcaatggttcttat 350  Q
    ||||||||| | |||| |||||||||||| |||||||||  |||   |||||||||||| | | ||||| ||||||||||||| |||||||| ||| ||     
T  22511050 gtgttttgattgttttgtagtgagaaatcatgtaaatcgaaaaatcaagacatcaagtgaaagattgaggatatgaagattgatgttcaatgattcatag 22511149  T
Q  351 aaggtatttgaagacaatac 370  Q
    | ||| ||||||||||||||    
T  22511150 atggtttttgaagacaatac 22511169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 169 - 376
Target Start/End: Original strand, 24187987 - 24188198
Alignment:
Q  169 tgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaa---tcatacaacttcataggtgttttgagtct 265  Q
    ||||| |||||| || ||||||||||||| | |||||| | ||| ||||  ||| ||||||| |||||   |||| ||||| || | ||||||||||| |    
T  24187987 tgtcattggtttaaggaactttttgtattgtattcattcgagtcattgtgattcacttttatcctaaatattcattcaactccaaatgtgttttgagtat 24188086  T
Q  266 ttt-tagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggagg-ttgagaatatgaagattgaagttcaatggttcttataaggtatttgaag 363  Q
    ||| |||||||||||| ||||||||| | ||   || |||||  || ||| |  ||||||||||||||||||  |||| | ||||| || || |||||||    
T  24188087 tttgtagtgagaaatcatgtaaatcgaccaatcaaggcatcacatgaaggatcaagaatatgaagattgaag-acaatagatcttagaaagtttttgaag 24188185  T
Q  364 acaatacaaagtg 376  Q
    |||||||||||||    
T  24188186 acaatacaaagtg 24188198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 169 - 273
Target Start/End: Complemental strand, 32276607 - 32276503
Alignment:
Q  169 tgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtctttt 268  Q
    ||||||||||||||  ||| ||||| ||| |||| ||| | ||| ||||| ||    ||||||||||||||| ||||| ||| ||||||||||||| |||    
T  32276607 tgtcaatggtttgaagaacattttgcattgtttttattcgagtcattgtaattgaagtttattctaaatcattcaactccatgggtgttttgagtccttt 32276508  T
Q  269 tagtg 273  Q
    |||||    
T  32276507 tagtg 32276503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 376
Target Start/End: Complemental strand, 22525744 - 22525705
Alignment:
Q  337 tcaatggttcttataaggtatttgaagacaatacaaagtg 376  Q
    ||||||||||||| ||||||||||||||||| ||||||||    
T  22525744 tcaatggttcttagaaggtatttgaagacaacacaaagtg 22525705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 241 - 295
Target Start/End: Original strand, 34077031 - 34077085
Alignment:
Q  241 acaacttcataggtgttttgagtctttttagtgagaaatcgtgtaaatcggcaaa 295  Q
    ||||||||||| || ||||||||| ||||||||||||||| ||||| | ||||||    
T  34077031 acaacttcataagtcttttgagtcattttagtgagaaatcatgtaatttggcaaa 34077085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 166 - 268
Target Start/End: Original strand, 35031720 - 35031822
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    |||||| ||||||||||| ||| | ||||||| |||||| | | |||||||||  |  ||||||| ||| ||||| ||| | |||||||||||||||| |    
T  35031720 agttgttaatggtttgaggaacatattgtattgttttcactcgagtcgttgtaacttacttttatcctagatcatgcaattccataggtgttttgagtgt 35031819  T
Q  266 ttt 268  Q
    |||    
T  35031820 ttt 35031822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 259
Target Start/End: Complemental strand, 21843099 - 21843006
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgtttt 259  Q
    ||||| ||||||||| || ||| | ||||||| |||||||| | ||| ||||| ||  ||||||| ||||||||| |||||  |||||||||||    
T  21843099 agttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttt 21843006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 252
Target Start/End: Complemental strand, 28278515 - 28278434
Alignment:
Q  171 tcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcatag 252  Q
    ||||||||||||  ||| |  ||||||||||||| ||| ||||||||| ||| ||||||| ||| ||||| ||||| |||||    
T  28278515 tcaatggtttgaagaacatagtgtattattttcacttgagtcgttgtaattcacttttatcctagatcatgcaactccatag 28278434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 9e-47; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 163 - 376
Target Start/End: Complemental strand, 26854417 - 26854205
Alignment:
Q  163 agaagttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgag 262  Q
    ||||||||| |||| |||||| ||||||||||||| ||||||||   ||||||||| |||  |||||| |||| |||||||||||||||| |||||||||    
T  26854417 agaagttgttaatgttttgaggaactttttgtattcttttcattcaagtcgttgtaattcaattttatcctaattcatacaacttcatagatgttttgag 26854318  T
Q  263 tctttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggagg-ttgagaatatgaagattgaagttcaatggttcttataaggtatttga 361  Q
    ||||||||  |||||||| |||||| ||||||||  |||||| ||||| ||| |  |  ||||||||||||||||||||||||||||| ||| |||||||    
T  26854317 tcttttta--gagaaatcatgtaaaccggcaaaacaagacattaagtgaaggatcaatgatatgaagattgaagttcaatggttcttagaagatatttga 26854220  T
Q  362 agacaatacaaagtg 376  Q
    |||||||||||||||    
T  26854219 agacaatacaaagtg 26854205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 163 - 372
Target Start/End: Original strand, 31313567 - 31313777
Alignment:
Q  163 agaagttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgag 262  Q
    ||||||||||||||  || || ||| ||||||||| ||||| ||   ||||||||| ||| ||||||| ||||||||| |||||||||||||||||||||    
T  31313567 agaagttgtcaatgtctttaggaacgttttgtattgttttcgttcaagtcgttgtaattcacttttatcctaaatcatgcaacttcataggtgttttgag 31313666  T
Q  263 tctttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggagg-ttgagaatatgaagattgaagttcaatggttcttataaggtatttga 361  Q
    | |||||||| ||||||| ||||||| || ||||  | |||||| ||| ||| || |||||||||||| ||||| |||||| |||||||||||| |||||    
T  31313667 tttttttagtaagaaatcatgtaaattggaaaaacaatacatcacgtgaaggattaagaatatgaagaatgaagatcaatgattcttataaggtttttga 31313766  T
Q  362 agacaatacaa 372  Q
    |||||||||||    
T  31313767 agacaatacaa 31313777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 166 - 376
Target Start/End: Complemental strand, 52271341 - 52271130
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    |||||||| ||||||||| || ||| |||| | |||||||||  ||||||||  ||| ||||  | |||||| || ||||| ||||| ||||||||||||    
T  52271341 agttgtcattggtttgaggaaatttgtgtacttttttcatttaagtcgttgtcattcactttattcctaaattatgcaactccatagatgttttgagtct 52271242  T
Q  266 ttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggagg-ttgagaatatgaagattgaagttcaatggttcttataaggtatttgaaga 364  Q
    ||||||||||||||  |||||||||||||||  | ||  || ||| ||| | ||| |||||||||||||||||||||||| |||| ||||||||||||||    
T  52271241 ttttagtgagaaattatgtaaatcggcaaaacaaaacgccacgtgaaggatcgaggatatgaagattgaagttcaatggtacttagaaggtatttgaaga 52271142  T
Q  365 caatacaaagtg 376  Q
    ||||||||||||    
T  52271141 caatacaaagtg 52271130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 171 - 372
Target Start/End: Original strand, 26102080 - 26102282
Alignment:
Q  171 tcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtcttttta 270  Q
    ||||||||||||| | | ||||||||| |||||||| | || |||||| ||| ||||||| ||||||||| ||||| ||| |||||||||||||||||||    
T  26102080 tcaatggtttgaggaccattttgtattgttttcattcgagttgttgtaattcacttttatcctaaatcatgcaactccatgggtgttttgagtcttttta 26102179  T
Q  271 gtgagaaatcgtgtaaatcggcaaaaagagacatcaagtgga-ggttgagaatatgaagattgaagttcaatggttcttataaggtatttgaagacaata 369  Q
    |||||| |||||| |||||| |||||  |||||||| ||| | | |  || ||||||||| ||||| |||||| || ||| ||||| |||||||||||||    
T  26102180 gtgagatatcgtgcaaatcgacaaaacaagacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgatttttagaaggtttttgaagacaata 26102279  T
Q  370 caa 372  Q
    |||    
T  26102280 caa 26102282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 166 - 372
Target Start/End: Complemental strand, 15298966 - 15298760
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    |||||||||||||||||| || |||||||||| | ||||||||  || ||||| ||   |||||| | ||||||| ||||||||||||||||||| ||||    
T  15298966 agttgtcaatggtttgaggaagtttttgtattgtattcatttgaatcattgtaattaagttttatccaaaatcatgcaacttcataggtgttttgtgtct 15298867  T
Q  266 ttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggagg-ttgagaatatgaagattgaagttcaatggttcttataaggtatttgaaga 364  Q
     |||||||| ||||| |||||||||||||||  ||| |||| ||  ||| | ||| ||||||||||| ||| ||||||||||||| ||| |||||||||     
T  15298866 atttagtgataaatcatgtaaatcggcaaaacaagaaatcatgtaaaggatcgaggatatgaagattcaagatcaatggttcttaaaagttatttgaag- 15298768  T
Q  365 caatacaa 372  Q
    ||||||||    
T  15298767 caatacaa 15298760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 166 - 376
Target Start/End: Original strand, 30675502 - 30675713
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    |||||||||||||||||| ||| | ||||||| |||||| | | ||||||||| | | ||||| | ||| ||||| ||||| |||||||||||||||| |    
T  30675502 agttgtcaatggtttgaggaacatattgtattgttttcactcgagtcgttgtaatacacttttgtcctatatcatgcaactccataggtgttttgagtgt 30675601  T
Q  266 ttt-tagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggagg-ttgagaatatgaagattgaagttcaatggttcttataaggtatttgaag 363  Q
    ||| |||||||||||| |||||||||||||    |||||||| ||| ||| |  ||||| |||||||||||  ||||||||||||| ||||| |||||||    
T  30675602 tttatagtgagaaatcatgtaaatcggcaatttaagacatcatgtgaaggatcaagaatgtgaagattgaa-atcaatggttcttagaaggtttttgaag 30675700  T
Q  364 acaatacaaagtg 376  Q
    | |||||||||||    
T  30675701 ataatacaaagtg 30675713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 171 - 306
Target Start/End: Original strand, 18795204 - 18795339
Alignment:
Q  171 tcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtcttttta 270  Q
    ||||||||||||| ||| ||||||||  |||||||||| ||  ||||| ||  ||||||| |||| ||||||| |||||||||||||||||||| |||||    
T  18795204 tcaatggtttgaggaacattttgtatcgttttcatttgagtaattgtaatttacttttatcctaagtcatacagcttcataggtgttttgagtcatttta 18795303  T
Q  271 gtgagaaatcgtgtaaatcggcaaaaagagacatca 306  Q
    ||||||||||||||||||| ||||||  ||||||||    
T  18795304 gtgagaaatcgtgtaaatcagcaaaacaagacatca 18795339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 167 - 376
Target Start/End: Complemental strand, 19257899 - 19257691
Alignment:
Q  167 gttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtctt 266  Q
    |||||||||| |||||| |||||| |||||| ||||||||   ||| ||||| |||  |||||| ||||||||| ||| | | |||||||||||||| ||    
T  19257899 gttgtcaatgatttgaggaactttctgtattgttttcattctagtcattgtaattcgattttatcctaaatcatgcaagtccttaggtgttttgagtatt 19257800  T
Q  267 tttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtg-gaggttgagaatatgaagattgaagttcaatggttcttataaggtatttgaagac 365  Q
    |||||||||||||||||||||| |||| ||  ||||||||  ||  || | ||| ||||||||||||||  ||||  ||||||| ||||| |||||||||    
T  19257799 tttagtgagaaatcgtgtaaattggcataacaagacatcacatgaaagatcgaggatatgaagattgaacatcaa--gttcttagaaggtctttgaagac 19257702  T
Q  366 aatacaaagtg 376  Q
    |||||||||||    
T  19257701 aatacaaagtg 19257691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 518 - 602
Target Start/End: Complemental strand, 50860470 - 50860387
Alignment:
Q  518 tgaacccaacagttaacacatcgatcgtaggaagaagaagttgcaatggctttctttctctttcggtggagatgctggtcgcagt 602  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||| ||||||||||    
T  50860470 tgaacccaacagttaacacatcgatcgtaggaagaagaagttgcaatggc-ttctttctgtttcgctggagatgttggtcgcagt 50860387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 163 - 376
Target Start/End: Complemental strand, 11770094 - 11769879
Alignment:
Q  163 agaagttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgag 262  Q
    |||| ||||||||||||| || ||| | ||||||| |||||| | ||||||||||| ||| ||||||| |||||||||  |||||||| ||||| |||||    
T  11770094 agaatttgtcaatggtttaaggaacatattgtattgttttcactcgtgtcgttgtaattcacttttatcctaaatcatgaaacttcatgggtgtgttgag 11769995  T
Q  263 tctttt-tagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggaggttgaga-atatgaagattgaagttcaatggttcttataaggtatttg 360  Q
    | ||||  ||||||||||| |||||||||  |||   ||||||||  || | | | | | |||||||||||||||  |||||||||||| ||||| ||||    
T  11769994 tgttttgcagtgagaaatcatgtaaatcgaaaaatcaagacatcacatgaatgatcaaagatatgaagattgaagaccaatggttcttagaaggtttttg 11769895  T
Q  361 aagacaatacaaagtg 376  Q
    ||||||||||||||||    
T  11769894 aagacaatacaaagtg 11769879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 174 - 372
Target Start/End: Original strand, 21548674 - 21548873
Alignment:
Q  174 atggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtctttttagtg 273  Q
    ||||||||||||||||||| |||| |||||||| | ||||||||| |||  |||||| |||||  || ||||| |||| |||||| |||||||| |||||    
T  21548674 atggtttgagaaactttttatattgttttcattcgagtcgttgtaattcagttttatcctaaaaaatgcaactccataagtgtttggagtctttctagtg 21548773  T
Q  274 agaaatcgtgtaaatcggcaaaaagagacatcaagtggag-gttgagaatatgaagattgaagttcaatggttcttataaggtatttgaagacaatacaa 372  Q
     ||||||  ||||||||| ||||  |||||||| ||  ||  ||| | ||||||||||||||| | ||||||||||| |||  ||||||||| |||||||    
T  21548774 tgaaatcaagtaaatcggaaaaacaagacatcacgtaaagaattgtggatatgaagattgaagctaaatggttcttagaagacatttgaagataatacaa 21548873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 178 - 372
Target Start/End: Complemental strand, 27461266 - 27461070
Alignment:
Q  178 tttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtctttttagtgagaa 277  Q
    |||||| ||| ||||||||| ||||||||   || ||| || ||| ||||||| |||||| || |||||||||||||||||  |||||||||||| ||||    
T  27461266 tttgaggaacattttgtattgttttcattcaagttgttataattcacttttatcctaaattatgcaacttcataggtgtttgtagtctttttagtaagaa 27461167  T
Q  278 atcgtgtaaatcggcaaaaa-gagacatcaagtg-gaggttgagaatatgaagattgaagttcaatggttcttataaggtatttgaagacaatacaa 372  Q
    ||| ||||| |||| |||||  ||||||||  ||  || | ||| ||||||||  ||||| ||||||||||||| ||||| ||||||||||||||||    
T  27461166 atcatgtaagtcggaaaaaacaagacatcacatgaaagatcgaggatatgaagtatgaagatcaatggttcttaaaaggtttttgaagacaatacaa 27461070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 409 - 469
Target Start/End: Complemental strand, 50860527 - 50860467
Alignment:
Q  409 aaaaagaaatttgagtgataccatgtagcgtgcgttcttgatgatattggaaatcaatgaa 469  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50860527 aaaatgaaatttgagtgataccatgtagcgtgcgttcttgatgatattggaaatcaatgaa 50860467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 211 - 376
Target Start/End: Complemental strand, 25727961 - 25727794
Alignment:
Q  211 tcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtctttt-tagtgagaaatcgtgtaaatcggcaaaaagagacatcaagt 309  Q
    |||||||| ||| ||||||| ||||||||| |||||  ||||||||||||||| |||| |||||||||||| ||||||||| ||||   | | ||||  |    
T  25727961 tcgttgtaattcacttttatcctaaatcatgcaactcaataggtgttttgagtgttttgtagtgagaaatcatgtaaatcgacaaatcaatatatcacat 25727862  T
Q  310 ggagg-ttgagaatatgaagattgaagttcaatggttcttataaggtatttgaagacaatacaaagtg 376  Q
    | ||| || || ||||||||||||||| ||||||||||||  ||||| |||||||||||| |||||||    
T  25727861 gaaggattaaggatatgaagattgaagatcaatggttcttggaaggtttttgaagacaatccaaagtg 25727794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 211 - 376
Target Start/End: Complemental strand, 25736369 - 25736202
Alignment:
Q  211 tcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtctttt-tagtgagaaatcgtgtaaatcggcaaaaagagacatcaagt 309  Q
    |||||||| ||| ||||||| ||||||||| |||||  ||||||||||||||| |||| |||||||||||| ||||||||| ||||   | | ||||  |    
T  25736369 tcgttgtaattcacttttatcctaaatcatgcaactcaataggtgttttgagtgttttgtagtgagaaatcatgtaaatcgacaaatcaatatatcacat 25736270  T
Q  310 ggagg-ttgagaatatgaagattgaagttcaatggttcttataaggtatttgaagacaatacaaagtg 376  Q
    | ||| || || ||||||||||||||| ||||||||||||  ||||| |||||||||||| |||||||    
T  25736269 gaaggattaaggatatgaagattgaagatcaatggttcttggaaggtttttgaagacaatccaaagtg 25736202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 163 - 288
Target Start/End: Original strand, 18391097 - 18391222
Alignment:
Q  163 agaagttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgag 262  Q
    ||||||||||||||||||||| ||| |||| ||||||||||||||| ||||||||| ||  ||||||| ||| ||||| ||| | |||||| |||| |||    
T  18391097 agaagttgtcaatggtttgagtaacattttatattattttcatttgagtcgttgtaattaacttttatcctagatcatgcaattccataggcgtttagag 18391196  T
Q  263 tctttttagtgagaaatcgtgtaaat 288  Q
    | |||||||  ||||||| |||||||    
T  18391197 tatttttaggaagaaatcatgtaaat 18391222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 166 - 373
Target Start/End: Original strand, 25126498 - 25126706
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    ||||||||||||||||||||| |||||||||| |||| ||||| ||||| ||| |||  |||||| |||||||||   | |  ||| |||||||||||||    
T  25126498 agttgtcaatggtttgagaaattttttgtattgtttttatttgagtcgtggtaattcagttttatcctaaatcatgtgattatatatgtgttttgagtct 25126597  T
Q  266 ttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggagg-ttgagaatatgaagattgaagttcaatggttcttataaggtatttgaaga 364  Q
    ||||| ||||||||| |||||||  | ||||  |||||||| ||| ||| ||||| |||||| || |  || ||||| ||||||| ||  | |||||| |    
T  25126598 ttttaatgagaaatcatgtaaattagaaaaataagacatcacgtgaaggattgaggatatgacgactacagatcaatagttcttagaaaatctttgaata 25126697  T
Q  365 caatacaaa 373  Q
    |||||||||    
T  25126698 caatacaaa 25126706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 166 - 376
Target Start/End: Complemental strand, 25494576 - 25494374
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    |||||||||||||||||| ||| | |||| || |||||  ||| ||| ||||| ||  ||||||| ||||||||| ||||| |||||||||||||         
T  25494576 agttgtcaatggtttgaggaacatattgtcttgttttctcttgagtccttgtaatttacttttatcctaaatcatgcaactacataggtgttttg----- 25494482  T
Q  266 ttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggaggttgagaatatgaagattgaagttcaatggttcttataaggtatttgaagac 365  Q
       |||||||||||| ||||||||| ||||   ||||||||  |  |||   |  |||||||||||||||  |||||||||||| ||||| |||||||||    
T  25494481 ---tagtgagaaatcatgtaaatcgacaaatcaagacatcacattaaggagcaagatatgaagattgaagaccaatggttcttagaaggtttttgaagac 25494385  T
Q  366 aatacaaagtg 376  Q
    |||||||||||    
T  25494384 aatacaaagtg 25494374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 166 - 376
Target Start/End: Original strand, 26657494 - 26657705
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    |||||||||||||||||| ||  |  |||||| |||||| | |  |||||||| ||| ||||||| ||| ||||  ||||| |||||||||||||||| |    
T  26657494 agttgtcaatggtttgaggaatataatgtattgttttcactcgattcgttgtaattcacttttatcctagatcacgcaactccataggtgttttgagtgt 26657593  T
Q  266 ttt-tagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggagg-ttgagaatatgaagattgaagttcaatggttcttataaggtatttgaag 363  Q
    ||| |||||| ||||| ||||||||| ||||   |||||| | ||| ||| |  ||  |||||| || |||| ||||| ||||||||||||| |||||||    
T  26657594 tttgtagtgaaaaatcatgtaaatcgacaaatcaagacattaggtgaaggatcaaggctatgaaaatcgaag-tcaatagttcttataaggtttttgaag 26657692  T
Q  364 acaatacaaagtg 376  Q
    |||| ||||||||    
T  26657693 acaaaacaaagtg 26657705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 166 - 355
Target Start/End: Original strand, 34381726 - 34381919
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    |||||| ||||||||||  ||| | || |||| |||||||| | ||||||||| ||| ||| ||||||||||||  |||||||||||||||||||||| |    
T  34381726 agttgttaatggtttgaagaacatattatattgttttcattcgagtcgttgtaattcacttctattctaaatcacgcaacttcataggtgttttgagtat 34381825  T
Q  266 ttt---tagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtg-gaggttgagaatatgaagattgaagttcaatggttcttataaggt 355  Q
    |||   |||||| ||||  ||||||||| ||||   | |||||| |||  || |  || |||||||| |||||| ||||||||| |||||||||    
T  34381826 tttgtatagtgaaaaataatgtaaatcgacaaatcaaaacatcacgtgaaagatcaaggatatgaagtttgaagatcaatggttgttataaggt 34381919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 166 - 287
Target Start/End: Original strand, 50047199 - 50047321
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    ||||||||||| |||||||||| | ||||||| |||||| | | ||| | ||| ||| ||||||| ||||||||||||||| ||||  |||||||||| |    
T  50047199 agttgtcaatgatttgagaaacatattgtattgttttcactcgagtcatggtaattcacttttatcctaaatcatacaactccatatatgttttgagtgt 50047298  T
Q  266 ttt-tagtgagaaatcgtgtaaa 287  Q
    ||| ||| |||||||| ||||||    
T  50047299 tttgtagcgagaaatcatgtaaa 50047321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 174 - 368
Target Start/End: Complemental strand, 15417062 - 15416866
Alignment:
Q  174 atggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtctttttagtg 273  Q
    |||||||||||||| |||| |||| ||||||||    || || || ||| |||||||  |||||||| |||||  ||||||||||||||||||||||  |    
T  15417062 atggtttgagaaacattttttattgttttcattcaattcattttaattcacttttatcttaaatcatgcaactgtataggtgttttgagtctttttatag 15416963  T
Q  274 agaaatcgtgtaaatcggcaaaaagagacatcaagtggaggttga--gaatatgaagattgaagttcaatggttcttataaggtatttgaagacaat 368  Q
      ||||| ||||| ||||||||   ||||| ||  || ||| | |  | ||||||||| ||||| ||||||||||||||||||| ||| ||||||||    
T  15416962 tcaaatcatgtaattcggcaaagcaagacaccacatgaaggatcaagggatatgaagaatgaagatcaatggttcttataaggtttttaaagacaat 15416866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 167 - 376
Target Start/End: Complemental strand, 18301099 - 18300888
Alignment:
Q  167 gttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtctt 266  Q
    ||||||||||||||||| ||  | ||||| | ||||| ||   ||||||||| ||  |||||||   ||||||| |||||||||||||||||||||| ||    
T  18301099 gttgtcaatggtttgaggaatatattgtactgttttctttaaagtcgttgtaattgacttttatcgaaaatcatgcaacttcataggtgttttgagtgtt 18301000  T
Q  267 tt-tagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggagg-ttgagaatatgaagattgaagttcaatggttcttataaggtatttgaaga 364  Q
    ||  |||||  |||| ||||||| | ||||   |||||||| ||| ||| |  || ||||||||||| ||   |||||||||||| ||||| ||||||||    
T  18300999 ttaaagtgatgaatcatgtaaatagacaaatcaagacatcacgtgaaggatcaaggatatgaagattaaataccaatggttcttagaaggtttttgaaga 18300900  T
Q  365 caatacaaagtg 376  Q
    ||||||| ||||    
T  18300899 caatacagagtg 18300888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 236 - 376
Target Start/End: Original strand, 30781848 - 30781989
Alignment:
Q  236 atcatacaacttcataggtgttttgagtctttt-tagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggaggttgagaatatgaag-attga 333  Q
    ||||||||||| |||||||||||||||| |||| ||||||| |||| ||||||||  ||||   |||||||| ||| ||| | | |  |||||| |||||    
T  30781848 atcatacaactccataggtgttttgagtgttttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaaggatca-aggatgaagaattga 30781946  T
Q  334 agttcaatggttcttataaggtatttgaagacaatacaaagtg 376  Q
    || |||| |||||||| |||||  |||||||||||||||||||    
T  30781947 agatcaagggttcttaaaaggttgttgaagacaatacaaagtg 30781989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 171 - 289
Target Start/End: Complemental strand, 8247749 - 8247630
Alignment:
Q  171 tcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtctttt-t 269  Q
    ||||||||||||| ||| | || ||||||||||| ||| ||| ||||| ||   |||||  ||| ||||| ||||| |||||||||||||||| |||| |    
T  8247749 tcaatggtttgaggaacatattttattattttcacttgagtcattgtaattttgttttaccctagatcatgcaactccataggtgttttgagtgttttgt 8247650  T
Q  270 agtgagaaatcgtgtaaatc 289  Q
    |||||| |||| ||||||||    
T  8247649 agtgaggaatcatgtaaatc 8247630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 225 - 295
Target Start/End: Complemental strand, 25730609 - 25730538
Alignment:
Q  225 ttttattctaaatcatacaacttcataggtgttttgagtctttt-tagtgagaaatcgtgtaaatcggcaaa 295  Q
    |||||| ||||||||| |||||||| ||||||||||||| |||| ||| |||||||| ||||||||| ||||    
T  25730609 ttttatcctaaatcatgcaacttcacaggtgttttgagtgttttgtagcgagaaatcatgtaaatcgacaaa 25730538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 166 - 260
Target Start/End: Original strand, 12810340 - 12810434
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttg 260  Q
    |||||||||||||||||| ||| | ||||||| ||||||||   ||||||||| |||  |||||| ||| ||||| ||| ||| |||||||||||    
T  12810340 agttgtcaatggtttgaggaacatattgtattgttttcattcaagtcgttgtaattcatttttatcctagatcatgcaatttcgtaggtgttttg 12810434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 376
Target Start/End: Complemental strand, 25665701 - 25665655
Alignment:
Q  330 ttgaagttcaatggttcttataaggtatttgaagacaatacaaagtg 376  Q
    |||||||||||||||||||||||  ||||| ||||||||||||||||    
T  25665701 ttgaagttcaatggttcttataaaatatttaaagacaatacaaagtg 25665655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 163 - 252
Target Start/End: Original strand, 19884187 - 19884276
Alignment:
Q  163 agaagttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcatag 252  Q
    ||||||| ||||||||||||| ||| |||| |||| |||||||| |  ||| |||| ||| ||||||| ||||||||| ||||| |||||    
T  19884187 agaagttatcaatggtttgaggaaccttttatattgttttcattcgattcgatgtaattctcttttatcctaaatcatgcaactccatag 19884276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 376
Target Start/End: Original strand, 9328342 - 9328396
Alignment:
Q  321 atatgaagattgaagttcaatggttcttataaggtatttgaagacaatacaaagtg 376  Q
    |||||||||||||| |||||| ||||||| ||||| |||||||||||||| |||||    
T  9328342 atatgaagattgaa-ttcaatcgttcttagaaggtttttgaagacaatactaagtg 9328396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 268
Target Start/End: Complemental strand, 13807840 - 13807747
Alignment:
Q  175 tggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtctttt 268  Q
    ||||||||  ||| ||||||||| ||||||||   ||||||||| ||| | || || |  |||||| ||||||||||| |||||||||||||||    
T  13807840 tggtttgatgaacattttgtattgttttcattcaagtcgttgtaattcacgttcatccctaatcatgcaacttcatagttgttttgagtctttt 13807747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 372
Target Start/End: Original strand, 25373862 - 25373971
Alignment:
Q  264 ctttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggaggttg-agaatatgaagattgaagttcaatggttcttataaggtatttgaa 362  Q
    |||||||| |||||||  |||||||||||||||  | ||||||| || ||| |  || ||||||||||| |||  |||||||||||| |||||  || ||    
T  25373862 ctttttagagagaaataatgtaaatcggcaaaagaaaacatcaattgaaggatccaggatatgaagattaaagaccaatggttcttagaaggttgtttaa 25373961  T
Q  363 gacaatacaa 372  Q
    ||||||||||    
T  25373962 gacaatacaa 25373971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 163 - 278
Target Start/End: Complemental strand, 25266445 - 25266329
Alignment:
Q  163 agaagttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgag 262  Q
    |||||||||||||||| ||| |||| | ||||||| |||||| | | ||| ||||| |||  ||||||  |  |||||  ||||||||| ||||||||||    
T  25266445 agaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcatttttatcttggatcatggaacttcatatgtgttttgag 25266346  T
Q  263 tctttt-tagtgagaaa 278  Q
    | |||| ||||||||||    
T  25266345 tgttttgtagtgagaaa 25266329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 96 - 160
Target Start/End: Complemental strand, 52271423 - 52271359
Alignment:
Q  96 tgatggaataacattagatatttttagctatctgtttagtgtatttccttgcatttgaaggcaaa 160  Q
    ||||||||||||||  ||| |||||| |||| | ||||||||| ||| |||||||| ||||||||    
T  52271423 tgatggaataacatatgatgtttttaactatgtttttagtgtaattctttgcatttaaaggcaaa 52271359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 95; Significance: 4e-46; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 96 - 376
Target Start/End: Original strand, 30405531 - 30405823
Alignment:
Q  96 tgatggaataacattagatatttttagctatctgtttagtgtatttccttgcatttgaaggcaaattagaagt-------------tgtcaatggtttga 182  Q
    ||||||||||||||  ||||||||| ||||| | | ||||||| ||| ||||||||||||| |||||||||||             ||| ||||||||||    
T  30405531 tgatggaataacatatgatattttttgctatgtttctagtgtaattctttgcatttgaaggtaaattagaagtcaattagaggagttgttaatggtttga 30405630  T
Q  183 gaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtctttttagtgagaaatcgt 282  Q
    | ||||||||||||| |||| |||||  || ||||| ||| |||| || ||||| ||| ||||| |||||||||||||||| |||||||||||||||| |    
T  30405631 ggaactttttgtattgtttttatttgactcattgtaattcacttt-atcctaaaccatgcaactccataggtgttttgagt-tttttagtgagaaatcat 30405728  T
Q  283 gtaaatcggcaaaaagagacatcaagtggaggtt-gagaatatgaagattgaagttcaatggttcttataaggtatttgaagacaatacaaagtg 376  Q
    ||||||||||||||  ||| |||| ||| ||| | ||| |||||||||||||||||||||| |||||| |||||||||||| |||||||||||||    
T  30405729 gtaaatcggcaaaataagaaatcatgtgaaggatcgaggatatgaagattgaagttcaatgattcttagaaggtatttgaatacaatacaaagtg 30405823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 166 - 376
Target Start/End: Complemental strand, 24597100 - 24596889
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    |||||||||||||||||   | |||||| ||| |||| || || ||||||||| |||  |||||| ||||||||| ||||| | |||||||||| |||||    
T  24597100 agttgtcaatggtttgatggagtttttgcattgttttgatctgagtcgttgtaattcaattttatcctaaatcatgcaactccgtaggtgttttaagtct 24597001  T
Q  266 ttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtgg-aggttgagaatatgaagattgaagttcaatggttcttataaggtatttgaaga 364  Q
    |||||||||||||||||||||||||||||||  |||||||| |||| || | ||| |||| |||||||||||||| |||||| || |||  |||||||||    
T  24597000 ttttagtgagaaatcgtgtaaatcggcaaaacaagacatcacgtggaagatcgaggatataaagattgaagttcagtggttcatagaagaaatttgaaga 24596901  T
Q  365 caatacaaagtg 376  Q
    ||||||||||||    
T  24596900 caatacaaagtg 24596889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 163 - 372
Target Start/End: Complemental strand, 5312885 - 5312675
Alignment:
Q  163 agaagttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgag 262  Q
    ||||||||| |||||| | || |||| |||||||| |||||||||| ||||||||| ||| |||||||  || | ||| ||||| |||||||||||||||    
T  5312885 agaagttgttaatggtctaaggaactatttgtattgttttcatttgagtcgttgtaattcacttttatcttatagcatgcaactccataggtgttttgag 5312786  T
Q  263 tctttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggagg-ttgagaatatgaagattgaagttcaatggttcttataaggtatttga 361  Q
    |||||||||||| ||||| |||||||||||||||| | |||||||||| ||| |  || |||||| |||||||  | ||||||||||| ||| | |||||    
T  5312785 tctttttagtgataaatcatgtaaatcggcaaaaataaacatcaagtgaaggatcaaggatatgaggattgaacataaatggttcttagaagatttttga 5312686  T
Q  362 agacaatacaa 372  Q
    |||||||||||    
T  5312685 agacaatacaa 5312675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 177 - 369
Target Start/End: Complemental strand, 12358847 - 12358655
Alignment:
Q  177 gtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtctttttagtgaga 276  Q
    ||||||||||  ||||||||| || ||||||| ||||||||| |||  |||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  12358847 gtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgaga 12358748  T
Q  277 aatcgtgtaaatcggcaaaaagagacatcaagtggaggttgagaatatgaagattgaagttcaatggttcttataaggtatttgaagacaata 369  Q
    |||  | |||||||| |||   | | |||   || || |  || ||||||||||||||| ||||||||||||| ||||| |||||||||||||    
T  12358747 aataatataaatcggaaaagcaaaatatcttatgaagatcaaggatatgaagattgaagatcaatggttcttagaaggtttttgaagacaata 12358655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 166 - 296
Target Start/End: Complemental strand, 3269062 - 3268932
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    |||||||| ||||||||| ||| ||||||||| ||||| |||| || |||||| ||| ||||||| ||||||||| ||||||| || ||||||| |||||    
T  3269062 agttgtcattggtttgagtaacattttgtattgttttcgtttgagttgttgtaattcacttttatcctaaatcatgcaacttcgtatgtgttttaagtct 3268963  T
Q  266 ttttagtgagaaatcgtgtaaatcggcaaaa 296  Q
    ||||||||||||||| |||||||||||||||    
T  3268962 ttttagtgagaaatcatgtaaatcggcaaaa 3268932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 166 - 376
Target Start/End: Original strand, 23124918 - 23125130
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    |||||| | |||| |||| ||| | ||||||| |||||| | | ||||||||| ||| | ||||| | |||||||||||||  ||||||||||||||| |    
T  23124918 agttgttagtggtctgaggaacatattgtattgttttcactcgagtcgttgtaattcacatttatccaaaatcatacaactctataggtgttttgagtgt 23125017  T
Q  266 ttt-tagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggaggtt-gagaatatgaagattgaagttcaatggttcttataaggtatttgaag 363  Q
    ||| |||||||||||| ||||||||| | ||   |||||||| ||| ||| | ||| ||||||||||||||||||||||||||||||||| |  || |||    
T  23125018 tttctagtgagaaatcatgtaaatcgaccaatcaagacatcatgtgaaggatcgaggatatgaagattgaagttcaatggttcttataagattcttaaag 23125117  T
Q  364 acaatacaaagtg 376  Q
    |||||||||||||    
T  23125118 acaatacaaagtg 23125130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 166 - 335
Target Start/End: Complemental strand, 20461744 - 20461574
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    |||||||||||||||||| |||  |||||||| |||||||| | |||||||||  ||  ||| || ||||||||  |||| | |||||||||| ||||||    
T  20461744 agttgtcaatggtttgaggaacaatttgtattgttttcattcgagtcgttgtaactcaatttcatcctaaatcacgcaacatgataggtgtttcgagtct 20461645  T
Q  266 ttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggagg-ttgagaatatgaagattgaag 335  Q
    ||||||||||||||| |||||||||||||||  |||||||||||| ||| |  || |||||||||||||||    
T  20461644 ttttagtgagaaatcatgtaaatcggcaaaataagacatcaagtgaaggatcaaggatatgaagattgaag 20461574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 166 - 372
Target Start/End: Original strand, 1074470 - 1074678
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtc- 264  Q
    |||||||||||||||||| |||   |||||||||||||||| |  || ||||| ||  ||||||| |||||| |||||||| |||| |||||||| |||     
T  1074470 agttgtcaatggtttgaggaaccaattgtattattttcattcgattcattgtaatttgcttttatcctaaattatacaactccataagtgttttgtgtct 1074569  T
Q  265 tttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggagg-ttgagaatatgaagattgaagttcaatggttcttataaggtatttgaag 363  Q
    |||||||||||||||| ||||||| || |||   |||||||||||  ||| |  || ||||||| |||||||  |||||||||||| |||||  ||||||    
T  1074570 tttttagtgagaaatcatgtaaattggaaaagcaagacatcaagtaaaggatcaaggatatgaaaattgaagaccaatggttcttaaaaggttgttgaag 1074669  T
Q  364 acaatacaa 372  Q
    |||||||||    
T  1074670 acaatacaa 1074678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 163 - 372
Target Start/End: Original strand, 18496580 - 18496790
Alignment:
Q  163 agaagttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgag 262  Q
    ||||||||||||| ||||||| |||| |||| ||| |||||||| |  || ||||| |||  |||||| ||||||||| | |||||||||||||||||||    
T  18496580 agaagttgtcaattgtttgaggaactatttgaattgttttcattcgaatcattgtaattcatttttatcctaaatcatgcgacttcataggtgttttgag 18496679  T
Q  263 tctttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggagg-ttgagaatatgaagattgaagttcaatggttcttataaggtatttga 361  Q
     || ||| |||||| ||| |||||||||| |||| | |||||| |||| ||| |  || |||||||||||||||   ||||||||||| || ||  ||||    
T  18496680 cctatttggtgagatatcatgtaaatcggaaaaacgggacatcgagtgaaggatcaaggatatgaagattgaagaataatggttcttagaatgttgttga 18496779  T
Q  362 agacaatacaa 372  Q
    ||| |||||||    
T  18496780 agaaaatacaa 18496790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 166 - 296
Target Start/End: Complemental strand, 17881595 - 17881465
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    ||||||||||| ||| || |||||||||||||||||||||| |  || ||||| ||   ||||||  |||||||| |||||| |||||| ||||||||||    
T  17881595 agttgtcaatgattttaggaactttttgtattattttcattcgaatcattgtaatttaattttatcataaatcatgcaacttaataggtattttgagtct 17881496  T
Q  266 ttttagtgagaaatcgtgtaaatcggcaaaa 296  Q
    |||||||||||| || |||||||||| ||||    
T  17881495 ttttagtgagaagtcatgtaaatcggaaaaa 17881465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 130 - 295
Target Start/End: Complemental strand, 7372708 - 7372532
Alignment:
Q  130 tttagtgtatttccttgcatttgaaggcaaattagaa---------gttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatt 220  Q
    ||||||||| ||| ||||||||||||| |||||||||         ||||||| ||||||||  ||||||||||||| |||||||| | ||||||||| |    
T  7372708 tttagtgtaattctttgcatttgaaggtaaattagaaattagaggagttgtcattggtttgatgaactttttgtattgttttcattcgagtcgttgtaat 7372609  T
Q  221 tcccttttat-tctaaatcatacaacttcataggtgttttgagt-ctttttagtgagaaatcgtgtaaatcggcaaa 295  Q
    ||  ||||||  | ||||||| |||||||||||||||||| |||  |||||||||||||||| |||||||| |||||    
T  7372608 tcaattttatcacgaaatcatgcaacttcataggtgttttcagtgttttttagtgagaaatcttgtaaatcagcaaa 7372532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 166 - 376
Target Start/End: Original strand, 29544537 - 29544749
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    |||||||||| ||||||| ||| | ||||||| |||||| | | ||||||||| ||| ||||| | ||||||  | ||| | |||| ||||||||||| |    
T  29544537 agttgtcaatagtttgaggaacatattgtattgttttcactcgagtcgttgtaattcacttttctcctaaattgtgcaattccataagtgttttgagtgt 29544636  T
Q  266 tttt-agtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggaggttgaga-atatgaagattgaagttcaatggttcttataaggtatttgaag 363  Q
    |||| ||| || |||| ||||||||| ||||   ||||||||  || ||| | | | ||||||||||||||| |||||| |||||| ||||| |||||||    
T  29544637 tttttagtaaggaatcatgtaaatcgacaaaccaagacatcacatgaaggatcaaagatatgaagattgaagatcaatgattcttagaaggtttttgaag 29544736  T
Q  364 acaatacaaagtg 376  Q
    |||||||||||||    
T  29544737 acaatacaaagtg 29544749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 168 - 306
Target Start/End: Original strand, 7815343 - 7815482
Alignment:
Q  168 ttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtcttt 267  Q
    ||||||||||||| |||||| | ||||||| |||||| | | || |||||| |||  |||||||||||||||| |||||||||||||||||||||| |||    
T  7815343 ttgtcaatggtttaagaaacatattgtatttttttcactcgggtggttgtaattcagttttattctaaatcatgcaacttcataggtgttttgagtgttt 7815442  T
Q  268 t-tagtgagaaatcgtgtaaatcggcaaaaagagacatca 306  Q
    | ||||||  |||| ||||||||  |||| | ||||||||    
T  7815443 tgtagtgatgaatcatgtaaatcaacaaataaagacatca 7815482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 166 - 373
Target Start/End: Original strand, 7142116 - 7142324
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    ||||||||||||||| || ||| | || ||||  ||||| | | ||||||||| ||| ||||||| | | ||||| ||||| |||||||||||| ||| |    
T  7142116 agttgtcaatggtttaaggaacatattttattgctttcactcgagtcgttgtaattcacttttatccaagatcatgcaactccataggtgttttaagtgt 7142215  T
Q  266 ttt-tagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggaggttgaga-atatgaagattgaagttcaatggttcttataaggtatttgaag 363  Q
    ||| |||||||||||| ||||||||| ||||   |||||||| ||| ||| | | | |||||||||||||| ||| |||||| |||  |||| |||||||    
T  7142216 tttgtagtgagaaatcatgtaaatcgacaaatcaagacatcacgtgaaggatcaaagatatgaagattgaa-ttcgatggtttttaataggtttttgaag 7142314  T
Q  364 acaatacaaa 373  Q
    | ||||||||    
T  7142315 agaatacaaa 7142324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 191 - 306
Target Start/End: Complemental strand, 8309103 - 8308988
Alignment:
Q  191 ttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtctttttagtgagaaatcgtgtaaatcg 290  Q
    ||||||| |||||||||| ||| ||||  ||   |||||| ||||||||| ||||| ||||  ||||||||||||||||||| ||||||| ||||||||     
T  8309103 ttgtattgttttcatttgagtcattgtgatttagttttatcctaaatcatgcaactccatacatgttttgagtctttttagtaagaaatcatgtaaatca 8309004  T
Q  291 gcaaaaagagacatca 306  Q
    ||||||  ||||||||    
T  8309003 gcaaaacaagacatca 8308988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 373
Target Start/End: Complemental strand, 20470907 - 20470698
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    |||||||||||||||||| ||| | || |||| |||||| ||  ||||||||| ||| |||| |  ||||||||| || || ||||| |||||||||| |    
T  20470907 agttgtcaatggtttgaggaacatattatattgttttcacttaagtcgttgtaattcactttcagcctaaatcatgcatctgcatagctgttttgagtgt 20470808  T
Q  266 ttt-tagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtgga-ggttgagaatatgaagattgaagttcaatggttcttataaggtatttgaag 363  Q
    ||| |||||| ||| | ||||||||| ||||   |||||||   || | | |  || || |||| ||||||||||||||||||||| |||||  ||||||    
T  20470807 tttatagtgataaagcatgtaaatcgacaaatcaagacatcgcatgaacgatcaaggatgtgaatattgaagttcaatggttcttagaaggttcttgaag 20470708  T
Q  364 acaatacaaa 373  Q
    ||||||||||    
T  20470707 acaatacaaa 20470698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 210 - 376
Target Start/End: Complemental strand, 9801927 - 9801760
Alignment:
Q  210 gtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtctttt-tagtgagaaatcgtgtaaatcggcaaaaagagacatcaag 308  Q
    ||||||||| ||| ||||||| ||| || || ||| | |||||||||||||||| |||  |||||| ||||| ||||||||| ||||   | |||||| |    
T  9801927 gtcgttgtaattcacttttatcctagattatgcaattccataggtgttttgagtttttaatagtgataaatcatgtaaatcgacaaatcaaaacatcatg 9801828  T
Q  309 tggaggttga-gaatatgaagattgaagttcaatggttcttataaggtatttgaagacaatacaaagtg 376  Q
    || ||| | | | |||||||||||||||| |||||||||||| ||||| ||| |||| |||||||||||    
T  9801827 tgaaggatcaaggatatgaagattgaagt-caatggttcttaaaaggtttttaaagaaaatacaaagtg 9801760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 321 - 376
Target Start/End: Complemental strand, 21545767 - 21545712
Alignment:
Q  321 atatgaagattgaagttcaatggttcttataaggtatttgaagacaatacaaagtg 376  Q
    ||||||||||||||| ||||||||||||| || |||||||||||||||| ||||||    
T  21545767 atatgaagattgaagatcaatggttcttagaaagtatttgaagacaataaaaagtg 21545712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 268
Target Start/End: Complemental strand, 1255310 - 1255208
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    |||||||||||||||||| ||    ||||||| |||||| | | ||| ||||| |||  |||||| ||||||||| |||||||||||||||||||||| |    
T  1255310 agttgtcaatggtttgaggaataaattgtattgttttcactcgagtcattgtaattcatttttatcctaaatcatgcaacttcataggtgttttgagtgt 1255211  T
Q  266 ttt 268  Q
    |||    
T  1255210 ttt 1255208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 165 - 259
Target Start/End: Complemental strand, 21545897 - 21545803
Alignment:
Q  165 aagttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgtttt 259  Q
    ||||||||||||||||||| ||| | ||||||| |||||| | | |||||||||  || ||||||| ||||||||| ||||| ||||||| ||||    
T  21545897 aagttgtcaatggtttgaggaacatattgtattgttttcactcgagtcgttgtaactcacttttatcctaaatcatgcaactacataggtttttt 21545803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 166 - 290
Target Start/End: Original strand, 4828809 - 4828931
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    |||| ||||||||||||| ||||||||||||| |||| | | |  || ||||| ||  ||||||| ||||||||| ||||| ||||| ||  ||||||||    
T  4828809 agttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgcaactccatagttg--ttgagtct 4828906  T
Q  266 ttttagtgagaaatcgtgtaaatcg 290  Q
    ||||| ||||||||| |||| ||||    
T  4828907 ttttaatgagaaatcatgtagatcg 4828931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 295
Target Start/End: Complemental strand, 7326898 - 7326838
Alignment:
Q  235 aatcatacaacttcataggtgttttgagtctttttagtgagaaatcgtgtaaatcggcaaa 295  Q
    |||||| |||||| |||||||||||||||| ||||||||||||||| | |||||| |||||    
T  7326898 aatcatgcaacttgataggtgttttgagtcattttagtgagaaatcatataaatcagcaaa 7326838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 168
Target Start/End: Original strand, 9755735 - 9755807
Alignment:
Q  96 tgatggaataacattagatatttttagctatctgtttagtgtatttccttgcatttgaaggcaaattagaagt 168  Q
    ||||| ||||||||  ||||||| ||||||| | |||||| ||||| ||||||||||||||||||||| ||||    
T  9755735 tgatgaaataacatatgatatttgtagctatgtttttagtatattttcttgcatttgaaggcaaattataagt 9755807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 210 - 364
Target Start/End: Complemental strand, 9761468 - 9761313
Alignment:
Q  210 gtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtcttt-ttagtgagaaatcgtgtaaatcggcaaaaagagacatcaag 308  Q
    ||||||||| ||| ||||||| ||| || || ||| | |||||||||||||||| |||  |||||| ||||| ||||||||| ||||   |||||||| |    
T  9761468 gtcgttgtaattcacttttatcctagattatgcaattccataggtgttttgagtttttaatagtgataaatcatgtaaatcgacaaatcaagacatcacg 9761369  T
Q  309 tggagg-ttgagaatatgaagattgaagttcaatggttcttataaggtatttgaaga 364  Q
    || ||| |  || ||||||||||||||| ||||||||||||| ||||| ||| ||||    
T  9761368 tgaaggatcaaggatatgaagattgaag-tcaatggttcttaaaaggtttttaaaga 9761313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 252 - 307
Target Start/End: Complemental strand, 3487376 - 3487321
Alignment:
Q  252 ggtgttttgagtctttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaa 307  Q
    ||||||||||||||||||| ||||||||| ||| |||||||||||  |||||||||    
T  3487376 ggtgttttgagtctttttaatgagaaatcatgtgaatcggcaaaacaagacatcaa 3487321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 166 - 260
Target Start/End: Original strand, 37144938 - 37145032
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttg 260  Q
    |||||||| || ||||| |||||||||||||||||||||||   ||||||||| |    |||||| ||||||||| ||||| | |||||||||||    
T  37144938 agttgtcattgttttgaaaaactttttgtattattttcattcaagtcgttgtaatatatttttatcctaaatcatgcaactccgtaggtgttttg 37145032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 253 - 368
Target Start/End: Complemental strand, 22532653 - 22532538
Alignment:
Q  253 gtgttttgagtctttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggagg-ttgagaatatgaagattgaagttcaatggttcttata 351  Q
    ||||| ||||| |||||||||||||||| |||||||||||||| | ||||||||  ||  || | ||| ||| ||||| ||||  ||||||||||||| |    
T  22532653 gtgttatgagtatttttagtgagaaatcatgtaaatcggcaaaca-agacatcacatgatggatcgaggatacgaagaatgaatatcaatggttcttaga 22532555  T
Q  352 aggtatttgaagacaat 368  Q
    | || ||||||||||||    
T  22532554 aagtttttgaagacaat 22532538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 279
Target Start/End: Complemental strand, 2353276 - 2353229
Alignment:
Q  232 ctaaatcatacaacttcataggtgttttgagtctttttagtgagaaat 279  Q
    ||||||||| ||||| ||||||||||||| | ||||||||||||||||    
T  2353276 ctaaatcatgcaactccataggtgttttgggcctttttagtgagaaat 2353229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 288
Target Start/End: Complemental strand, 4977917 - 4977794
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgag-tc 264  Q
    |||||||| ||||||||  || |||||||||| || |||||   ||||||||| ||| ||||||| |||||| || |||||||||||  ||| ||||       
T  4977917 agttgtcattggtttgaagaattttttgtatttttatcattcaagtcgttgtaattcacttttatcctaaattatgcaacttcatagaggttgtgagcgg 4977818  T
Q  265 tttttagtgagaaatcgtgtaaat 288  Q
    ||| |||||||||||| |||||||    
T  4977817 tttatagtgagaaatcatgtaaat 4977794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 376
Target Start/End: Original strand, 7494871 - 7494925
Alignment:
Q  321 atatgaagattgaagttcaatggttcttataaggtatttgaagacaatacaaagtg 376  Q
    ||||||||||||||||| ||||||||||| |||||   ||||||||||||||||||    
T  7494871 atatgaagattgaagtt-aatggttcttagaaggtccatgaagacaatacaaagtg 7494925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 376
Target Start/End: Original strand, 20017128 - 20017182
Alignment:
Q  321 atatgaagattgaagttcaatggttcttataaggtatttgaagacaatacaaagtg 376  Q
    |||||||||||||| | |||||||||||| |||||  |||||||||||||||||||    
T  20017128 atatgaagattgaact-caatggttcttagaaggttcttgaagacaatacaaagtg 20017182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 96 - 162
Target Start/End: Original strand, 4828726 - 4828792
Alignment:
Q  96 tgatggaataacattagatatttttagctatctgtttagtgtatttccttgcatttgaaggcaaatt 162  Q
    ||||||||||||||  ||||||||||||| | | ||||||||| ||  ||||||||||||| |||||    
T  4828726 tgatggaataacatatgatatttttagctttatttttagtgtaattatttgcatttgaaggaaaatt 4828792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 90 - 168
Target Start/End: Original strand, 9800526 - 9800603
Alignment:
Q  90 aagtggtgatggaataacattagatatttttagctatctgtttagtgtatttccttgcatttgaaggcaaattagaagt 168  Q
    ||||| ||||||||||||||  ||||||| |||| || | |||||| ||||| |||||||||||||| |||||| ||||    
T  9800526 aagtgatgatggaataacatatgatatttgtagc-atgtttttagtatattttcttgcatttgaaggaaaattataagt 9800603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 23804392 - 23804331
Alignment:
Q  233 taaatcatacaacttcataggtgttttgagtctttttagtgagaaatcgtgtaaatcggcaaa 295  Q
    ||||||| |||| |||||| |||||||||||| ||||||||| ||||| ||||| ||||||||    
T  23804392 taaatcaaacaatttcataagtgttttgagtc-ttttagtgaaaaatcatgtaattcggcaaa 23804331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 393
Target Start/End: Original strand, 20446384 - 20446446
Alignment:
Q  329 attgaagttcaatggttcttataaggtatttgaagacaatacaaagtggaaaagaaaatcatttt 393  Q
    ||||||| |||| |||||||| |||||  |||||||||||||||||||  ||| |||||||||||    
T  20446384 attgaagatcaagggttcttagaaggttgttgaagacaatacaaagtg--aaaaaaaatcatttt 20446446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 191 - 263
Target Start/End: Complemental strand, 2632508 - 2632436
Alignment:
Q  191 ttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagt 263  Q
    |||||||||||||| | |  |||||||| |||  |||||| | | ||||| ||||||||||||||||||||||    
T  2632508 ttgtattattttcaatcgaatcgttgtaattcagttttatccaagatcatgcaacttcataggtgttttgagt 2632436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 324 - 372
Target Start/End: Complemental strand, 10253677 - 10253629
Alignment:
Q  324 tgaagattgaagttcaatggttcttataaggtatttgaagacaatacaa 372  Q
    |||||||||||| |||||| | |||||| ||| ||||||||||||||||    
T  10253677 tgaagattgaagatcaatgatacttatagggtttttgaagacaatacaa 10253629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 4e-46; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 170 - 386
Target Start/End: Original strand, 11474868 - 11475086
Alignment:
Q  170 gtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtc-tttt 268  Q
    |||||||||||||| |||||||||||||||||||||| |  |||||||| |||  |||||| ||||||||| |||||||||| |||||||||||| ||||    
T  11474868 gtcaatggtttgaggaactttttgtattattttcattcgactcgttgtaattcaattttatcctaaatcatgcaacttcatatgtgttttgagtcttttt 11474967  T
Q  269 tagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggagg-ttgagaatatgaagattgaagttcaatggttcttataaggtatttgaagacaa 367  Q
    |||||||||||| |||||||||||||||  ||||||||  || ||| | ||  |||||| |||| ||| | ||||||||||| ||| |||||||||||||    
T  11474968 tagtgagaaatcatgtaaatcggcaaaacaagacatcacatgaaggatcgaagatatgaggattcaagataaatggttcttagaagatatttgaagacaa 11475067  T
Q  368 tacaaagtggaaaagaaaa 386  Q
    ||||||||| |||| ||||    
T  11475068 tacaaagtgaaaaaaaaaa 11475086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 166 - 369
Target Start/End: Complemental strand, 21829229 - 21829025
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    |||||||||||||||||| ||| |||||||||||||||||||| ||||||||| |||  |||||| |||||||||||||||||||| | |||||| ||||    
T  21829229 agttgtcaatggtttgaggaacattttgtattattttcatttgagtcgttgtaattcagttttatcctaaatcatacaacttcatatgagttttgggtct 21829130  T
Q  266 ttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggag-gttgagaatatgaagattgaagttcaatggttcttataaggtatttgaaga 364  Q
    | ||||||||||||| ||||||||| | |||  ||||||||  || ||  |  || ||||||||||||||| |||||||||| |  ||||| ||||||||    
T  21829129 tgttagtgagaaatcttgtaaatcgtcgaaacaagacatcacatgaagtatcaaggatatgaagattgaagatcaatggttcatcgaaggtctttgaaga 21829030  T
Q  365 caata 369  Q
    |||||    
T  21829029 caata 21829025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 166 - 392
Target Start/End: Complemental strand, 26387941 - 26387715
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||| ||| ||   |||||| ||||||||| ||||| ||||| ||||||||||||    
T  26387941 agttgtcaatggtttgagaaacgttttgtattcttttcatttgtgtcgtagtaattaagttttatcctaaatcatgcaactccatagatgttttgagtct 26387842  T
Q  266 ttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggaggttgaga-atatgaagattgaagttcaatggttcttataaggtatttgaaga 364  Q
    ||||| ||||||||| |||||||| || |||  |||||||||||| ||| | | | ||||||| ||||||| | ||||||||||   ||  |||| ||||    
T  26387841 ttttaatgagaaatcatgtaaatcagctaaacaagacatcaagtgaaggatcaaagatatgaatattgaagattaatggttcttgggagacatttaaaga 26387742  T
Q  365 caatacaaagtggaaaagaaaatcattt 392  Q
     |||||||||| ||||| ||||||||||    
T  26387741 gaatacaaagt-gaaaaaaaaatcattt 26387715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 166 - 334
Target Start/End: Original strand, 26297767 - 26297934
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    |||||| |||||||||||||||||||| |||| |||||||| | ||||||||| |||  |||||| ||||||||| ||||||||||  ||| ||||||||    
T  26297767 agttgttaatggtttgagaaactttttatattgttttcattcgagtcgttgtaattcaattttatcctaaatcatgcaacttcata--tgtgttgagtct 26297864  T
Q  266 ttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggagg-ttgagaatatgaagattgaa 334  Q
     |||||||| ||||| |||||||||||||||  |||||||||||| ||| | ||| ||||||||||||||    
T  26297865 atttagtgataaatcatgtaaatcggcaaaacaagacatcaagtgaaggatcgaggatatgaagattgaa 26297934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 166 - 376
Target Start/End: Complemental strand, 8402647 - 8402436
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    |||||||||||||||||| |||  |||||||| |||||||| | ||||||||| |||  ||||||  |||||||| ||||| |||||||||||||||||     
T  8402647 agttgtcaatggtttgaggaacaatttgtattgttttcattcgagtcgttgtaattcatttttatcttaaatcatgcaactccataggtgttttgagtc- 8402549  T
Q  266 ttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggagg-ttgagaatatgaagattgaagttcaatggttctt-ataaggtatttgaag 363  Q
    |||||| ||| ||||||||||||||  | |   |||||||||||| ||| | ||| |||||||||||||||  | |||||||||   |||||||||||||    
T  8402548 ttttagcgaggaatcgtgtaaatcgatagatcaagacatcaagtgaaggatcgaggatatgaagattgaagaactatggttcttcgaaaggtatttgaag 8402449  T
Q  364 acaatacaaagtg 376  Q
    | |||| ||||||    
T  8402448 aaaatataaagtg 8402436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 163 - 373
Target Start/End: Complemental strand, 23908370 - 23908159
Alignment:
Q  163 agaagttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgag 262  Q
    ||||||||||  ||| ||||| ||| ||||||||| |||||||| |  |||||||| ||||||||||| | |||| || ||| |||||||||| ||||||    
T  23908370 agaagttgtccctgggttgaggaacattttgtattgttttcattcgattcgttgtaattcccttttatccaaaataatgcaatttcataggtgctttgag 23908271  T
Q  263 tctttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggagg-ttgagaatatgaagattgaagttcaatggttcttataaggtatttga 361  Q
    ||||| ||| |||||||| |||||| |||||||   |||||||   || ||| |  |||||||||||||| ||| ||||||||| ||| || || |||||    
T  23908270 tctttctagggagaaatcatgtaaagcggcaaagcaagacatctcatgaaggatcaagaatatgaagatttaagatcaatggtttttagaaagtttttga 23908171  T
Q  362 agacaatacaaa 373  Q
    ||||||||||||    
T  23908170 agacaatacaaa 23908159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 214 - 376
Target Start/End: Original strand, 18474236 - 18474399
Alignment:
Q  214 ttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtctttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggag 313  Q
    ||||| ||| || |||| ||||||||| ||||| ||||||||||||||||||||| ||||||||||| |||||||||| || |  |||||| |  || ||    
T  18474236 ttgtaattcactgttatcctaaatcatgcaactccataggtgttttgagtcttttcagtgagaaatcatgtaaatcgggaacacaagacattacatgaag 18474335  T
Q  314 g-ttgagaatatgaagattgaagttcaatggttcttataaggtatttgaagacaatacaaagtg 376  Q
    | | ||  || | ||||||||| ||||||||| |||| ||||||||||||||||||||||||||    
T  18474336 gatcgaagatgtaaagattgaatttcaatggtacttagaaggtatttgaagacaatacaaagtg 18474399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 177 - 376
Target Start/End: Original strand, 28422482 - 28422681
Alignment:
Q  177 gtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtctttt-tagtgag 275  Q
    ||||||| || |||||||||| |||||||| |  || ||||| ||| ||||||| ||||||||| |||||  || |||||||||| | |||| |||||||    
T  28422482 gtttgaggaattttttgtattgttttcattcgaatcattgtaattcacttttat-ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgag 28422580  T
Q  276 aaatcgtgtaaatcggcaaaaagagacatcaagtggagg-ttgagaatatgaagattgaagttcaatggttcttataaggtatttgaagacaatacaaag 374  Q
    ||||| |||| |||| ||||   | |||||| ||| ||| ||||| |||||||||||||||||||||| |  ||| ||||||||||||||||||||||||    
T  28422581 aaatcatgtagatcgacaaatcaatacatcacgtgaaggattgaggatatgaagattgaagttcaatgatg-ttagaaggtatttgaagacaatacaaag 28422679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 166 - 376
Target Start/End: Complemental strand, 19219308 - 19219096
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    |||||||||||||||||| | | | || ||||| ||||| | | ||||||||| ||| ||||||| | ||||||| ||||  ||||  |||||||||| |    
T  19219308 agttgtcaatggtttgaggagcatattttattactttcactagagtcgttgtaattcacttttatccaaaatcatgcaacaccataaatgttttgagtgt 19219209  T
Q  266 ttt-tagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggaggttga-gaatatgaagattgaagttcaatggttcttataaggtatttgaag 363  Q
    ||| ||||||| |||| ||||||||  ||||   ||||||||  || ||| | | | ||||||||||||||| ||||||||||||| ||||| |||||||    
T  19219208 tttgtagtgaggaatcatgtaaatcttcaaaccaagacatcacatgaaggatcaaggatatgaagattgaagatcaatggttcttagaaggtttttgaag 19219109  T
Q  364 acaatacaaagtg 376  Q
    |||||||||||||    
T  19219108 acaatacaaagtg 19219096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 178 - 278
Target Start/End: Complemental strand, 30493349 - 30493249
Alignment:
Q  178 tttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtctttttagtgagaa 277  Q
    |||||||||||||||||||| |||||||| | ||||||||| ||   |||||| ||||||||| ||| | ||| ||||||||||||||||||||||||||    
T  30493349 tttgagaaactttttgtattgttttcattcgagtcgttgtagtttagttttatcctaaatcatgcaaatccatgggtgttttgagtctttttagtgagaa 30493250  T
Q  278 a 278  Q
    |    
T  30493249 a 30493249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 166 - 371
Target Start/End: Original strand, 19285118 - 19285322
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    |||||||||| || ||||||| |||| |||||||||||||| | ||||||||| |||  |||| | |||||||   ||||| | ||||||||| ||||||    
T  19285118 agttgtcaatagtatgagaaaatttt-gtattattttcattcgagtcgttgtaattcaattttgtcctaaatccagcaactccttaggtgtttcgagtct 19285216  T
Q  266 ttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggagg-ttgagaatatgaagattgaagttcaatggttcttataaggtatttgaaga 364  Q
     ||| |||||| |||||||||||| | ||||  ||| ||||| || ||| | ||| |||| ||||||||   ||||||||||||  ||||||||||||||    
T  19285217 ctttcgtgagatatcgtgtaaatcagaaaaacaagatatcaaatgtaggatcgag-atatcaagattgataatcaatggttcttggaaggtatttgaaga 19285315  T
Q  365 caataca 371  Q
    |||||||    
T  19285316 caataca 19285322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 197 - 310
Target Start/End: Complemental strand, 26797313 - 26797201
Alignment:
Q  197 tattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtctttttagtgagaaatcgtgtaaatcggcaaaa 296  Q
    |||||||||| | |||||| || |||  |||||| ||||||||| ||||||||||||||||| |||||||||||| |||| ||| ||||||||| |||||    
T  26797313 tattttcattcgagtcgttataattctgttttatcctaaatcatgcaacttcataggtgttt-gagtctttttagagagatatcatgtaaatcgacaaaa 26797215  T
Q  297 agagacatcaagtg 310  Q
      ||||||||||||    
T  26797214 caagacatcaagtg 26797201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 130 - 279
Target Start/End: Complemental strand, 19546124 - 19545967
Alignment:
Q  130 tttagtgtatttccttgcatttgaaggcaaattagaagt--------tgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtattt 221  Q
    ||||||||||||| |||||||||||||||||||||||||        | ||||||||||||| ||||| ||||||| |||| ||||| ||| ||||| ||    
T  19546124 tttagtgtatttctttgcatttgaaggcaaattagaagtcaatggtttatcaatggtttgaggaacttattgtattgtttttatttgagtcattgtaatt 19546025  T
Q  222 cccttttattctaaatcatacaacttcataggtgttttgagtctttttagtgagaaat 279  Q
    | || |||| ||| |||||  || || |||| |||||||||| |||||| ||||||||    
T  19546024 cactattatcctatatcatgtaattttatagttgttttgagtttttttaatgagaaat 19545967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 166 - 289
Target Start/End: Original strand, 13911283 - 13911407
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    |||||||||||||||||| ||| | | ||||| |||||| |||  || ||||| ||| ||||||| ||| ||||| |||||||||| ||||||| ||| |    
T  13911283 agttgtcaatggtttgaggaacatatggtattgttttcacttgaatcattgtaattcacttttatcctagatcatgcaacttcatatgtgtttttagtgt 13911382  T
Q  266 ttt-tagtgagaaatcgtgtaaatc 289  Q
    ||| |||||||||||| ||||||||    
T  13911383 tttgtagtgagaaatcatgtaaatc 13911407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 210 - 376
Target Start/End: Original strand, 10341857 - 10342016
Alignment:
Q  210 gtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtctttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagt 309  Q
    ||||||||| ||| ||||||||| ||||||| ||||| |||||||||||||        | |||||||||| ||||||||  ||||   | |||||||||    
T  10341857 gtcgttgtaattcacttttattcaaaatcatgcaactccataggtgttttg--------ttgtgagaaatcatgtaaatcaacaaatccaaacatcaagt 10341948  T
Q  310 ggagg-ttgagaatatgaagattgaagttcaatggttcttataaggtatttgaagacaatacaaagtg 376  Q
    | ||| || || |||  |||||||||| ||| ||||||||| ||||| ||||||||||||||||||||    
T  10341949 gaaggattaaggatagaaagattgaagatcagtggttcttagaaggtttttgaagacaatacaaagtg 10342016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 188 - 369
Target Start/End: Complemental strand, 5632608 - 5632435
Alignment:
Q  188 tttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtctttttagtgagaaatcgtgtaaa 287  Q
    ||||||| || ||||||||||  |||||||| ||| |||||||  | |||||| ||||| |||||||||||||        |||||||||||| ||||||    
T  5632608 tttttgtgttgttttcatttgattcgttgtaattcacttttatcttgaatcatgcaactccataggtgttttg--------tagtgagaaatcatgtaaa 5632517  T
Q  288 tcggcaaaaagagacatcaagtggagg-ttgagaatatgaagattgaagttcaatggttcttataaggtatttgaagacaata 369  Q
    ||| ||||   ||||||||  |||||  |||| ||||| ||||||||||  ||| ||||||||||||||||||||||| ||||    
T  5632516 tcgacaaaccaagacatcacatggagaattgataatataaagattgaaga-caacggttcttataaggtatttgaagataata 5632435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 317 - 376
Target Start/End: Complemental strand, 19543068 - 19543009
Alignment:
Q  317 gagaatatgaagattgaagttcaatggttcttataaggtatttgaagacaatacaaagtg 376  Q
    |||||| | ||||||||| |||||| ||||||| ||||||||||||||||||||||||||    
T  19543068 gagaatgtaaagattgaatttcaatagttcttagaaggtatttgaagacaatacaaagtg 19543009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 168 - 295
Target Start/End: Original strand, 33577754 - 33577881
Alignment:
Q  168 ttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtcttt 267  Q
    |||||||||||||||  ||| ||||||||| |||| |||||  || ||||| |||  || ||| ||||||||| |||| |||| |||| |||||||||||    
T  33577754 ttgtcaatggtttgaagaacgttttgtattgtttttatttgattcattgtaattcatttatatcctaaatcatgcaacctcattggtggtttgagtcttt 33577853  T
Q  268 ttagtgagaaatcgtgtaaatcggcaaa 295  Q
    |||  || ||| | ||||||||||||||    
T  33577854 ttaaagaaaaaacatgtaaatcggcaaa 33577881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 337
Target Start/End: Complemental strand, 27374546 - 27374377
Alignment:
Q  168 ttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtcttt 267  Q
    ||||||||||||| || || |||||||||| |||||||| | ||| || || | |  |||||| ||||||||| ||||||| |||||  ||||| || ||    
T  27374546 ttgtcaatggtttaaggaagtttttgtattgttttcattcgagtcattataatccagttttatcctaaatcatgcaacttcgtaggttatttgaatc-tt 27374448  T
Q  268 ttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggagg-ttgagaatatgaagattgaagtt 337  Q
    |||||| |||||| ||| ||| |||||||  ||| |||| ||| ||| |  |||||||||||||| |||||    
T  27374447 ttagtgcgaaatcatgtgaattggcaaaacaagagatcatgtgaaggatccagaatatgaagatttaagtt 27374377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 166 - 290
Target Start/End: Complemental strand, 2729715 - 2729590
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    ||||||||||||||  || ||| | || |||| |||||| | | ||| ||||| |||  |||||| ||||| ||| |||||||||| ||||||||||| |    
T  2729715 agttgtcaatggttcaaggaacatattatattgttttcactcgagtccttgtaattcatttttatcctaaaccatgcaacttcatatgtgttttgagtgt 2729616  T
Q  266 ttt-tagtgagaaatcgtgtaaatcg 290  Q
    ||| |||||| ||||| |||||||||    
T  2729615 tttgtagtgataaatcttgtaaatcg 2729590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 224 - 288
Target Start/End: Original strand, 27415244 - 27415309
Alignment:
Q  224 cttttattctaaatcatacaacttcataggtgttttgagtctttt-tagtgagaaatcgtgtaaat 288  Q
    |||||||  |||||||| |||||||||||||||||||||| |||| |||| ||||||| |||||||    
T  27415244 cttttatcgtaaatcatgcaacttcataggtgttttgagtgttttgtagtaagaaatcatgtaaat 27415309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 373
Target Start/End: Original strand, 26418829 - 26418946
Alignment:
Q  257 tttgagtctttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggagg-ttgagaatatgaagattgaagttcaatggttcttataaggt 355  Q
    ||||| |||||||||||||||||| |||||||||| ||||  |||||||   || ||| |  || ||||||||||| ||| |  |||||||||| |||||    
T  26418829 tttgaatctttttagtgagaaatcatgtaaatcggaaaaataagacatcgcatgaaggatcaaggatatgaagattaaagattgatggttcttagaaggt 26418928  T
Q  356 atttgaagacaatacaaa 373  Q
     ||| |||| ||||||||    
T  26418929 ttttaaagaaaatacaaa 26418946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 12409476 - 12409528
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgta 218  Q
    |||||||||||||||||  ||| | |||||||||||||| ||| |||||||||    
T  12409476 agttgtcaatggtttgaagaacatattgtattattttcacttgagtcgttgta 12409528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 144 - 204
Target Start/End: Original strand, 18065812 - 18065872
Alignment:
Q  144 ttgcatttgaaggcaaattagaagttgtcaatggtttgagaaactttttgtattattttca 204  Q
    |||||||| ||| |||| | | |||||||||||||||||||||| | ||||||| ||||||    
T  18065812 ttgcatttaaagacaaaatgggagttgtcaatggtttgagaaacatattgtattgttttca 18065872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 88; Significance: 5e-42; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 166 - 376
Target Start/End: Complemental strand, 11794 - 11583
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    ||||||||||| |||||  ||||||||||||  ||||||||||  |||||||| |||  |||| | ||||||||| ||||| ||| ||||||||||||||    
T  11794 agttgtcaatgatttgatgaactttttgtatagttttcatttgaatcgttgtaattcagttttgtcctaaatcatgcaactacatgggtgttttgagtct 11695  T
Q  266 ttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggagg-ttgagaatatgaagattgaagttcaatggttcttataaggtatttgaaga 364  Q
    |||  ||  |||||| ||||||||| |||||  |||||||||||  ||| |||||||| |||||||||||  |||||| |||||||||||||||||||||    
T  11694 tttccgtacgaaatcatgtaaatcgacaaaacaagacatcaagttaaggattgagaatttgaagattgaatatcaatgattcttataaggtatttgaaga 11595  T
Q  365 caatacaaagtg 376  Q
    ||||||||||||    
T  11594 caatacaaagtg 11583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 3e-40; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 225 - 376
Target Start/End: Complemental strand, 31859938 - 31859786
Alignment:
Q  225 ttttattctaaatcatacaacttcataggtgttttgagtctttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggagg-ttgagaata 323  Q
    |||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||  ||||| || ||| ||| | ||| |||    
T  31859938 ttttatcctaaatcatgcaactgcataggtgttttgagtctttttagtgagaaatcatgtaaatcagcaaaacaagacaccaggtgaaggatcgaggata 31859839  T
Q  324 tgaagattgaagttcaatggttcttataaggtatttgaagacaatacaaagtg 376  Q
    |||| ||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  31859838 tgaatattgaagatcaatggttcttagaaggtatttgaagacaatacaaagtg 31859786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 166 - 362
Target Start/End: Original strand, 26159774 - 26159971
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    |||||||||| |||| |||||| ||||||||| |||||||| | ||||||||| ||   |||| | |||||| || |||||||||| |||||||||||||    
T  26159774 agttgtcaatagtttaagaaacattttgtattgttttcattcgagtcgttgtaatttagttttgtcctaaattatccaacttcatatgtgttttgagtct 26159873  T
Q  266 ttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggagg-ttgagaatatgaagattgaagttcaatggttcttataaggtatttgaa 362  Q
    ||||||||| ||||| |||| ||| ||||||  |||||||| ||| ||| || || ||||||||||||||| ||||||||||||||||||| ||||||    
T  26159874 ttttagtgaaaaatcatgtagatcagcaaaacaagacatcatgtgaaggattcaggatatgaagattgaagatcaatggttcttataaggtctttgaa 26159971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 224 - 375
Target Start/End: Original strand, 17187251 - 17187401
Alignment:
Q  224 cttttattctaaatcatacaacttcataggtgttttgagtctttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggagg-ttgagaat 322  Q
    ||||||| ||||||||| ||||||||||||||||  ||||||||||||||| ||||| ||||||||| |||||  | |||||||||| | | ||||| ||    
T  17187251 cttttatcctaaatcatgcaacttcataggtgtt--gagtctttttagtgataaatcatgtaaatcgacaaaataacacatcaagtgaatgattgaggat 17187348  T
Q  323 atgaagattgaagttcaatggttcttataaggtatttgaagacaatacaaagt 375  Q
    ||||||||||||||||| ||||||||| ||| |||||||||||||||||||||    
T  17187349 atgaagattgaagttcagtggttcttagaagttatttgaagacaatacaaagt 17187401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 166 - 373
Target Start/End: Original strand, 21077251 - 21077459
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    |||||||||||||||||||||| |||||||||||||| ||| | ||||||||| |||  ||||||   |||||||  || | ||||||||||||  ||||    
T  21077251 agttgtcaatggtttgagaaaccttttgtattatttttattcgagtcgttgtagttcaattttatcacaaatcatcaaattccataggtgtttttggtct 21077350  T
Q  266 ttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggagg-ttgagaatatgaagattgaagttcaatggttcttataaggtatttgaaga 364  Q
    ||||||||| ||||| ||||||| |||||||  ||||| |||||||||| | ||   ||||| |||||||  ||||||||||||| |||||| | |||||    
T  21077351 ttttagtgaaaaatcatgtaaattggcaaaacaagacaccaagtggaggatcgaagttatgaggattgaatatcaatggttcttagaaggtaatcgaaga 21077450  T
Q  365 caatacaaa 373  Q
    |||||||||    
T  21077451 caatacaaa 21077459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 163 - 306
Target Start/End: Original strand, 10576468 - 10576611
Alignment:
Q  163 agaagttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgag 262  Q
    |||||||||| |||||||||  ||| ||||||||| |||||||| | ||| ||||| ||| |||||||||||||| |||||||||||||||||||||||     
T  10576468 agaagttgtccatggtttgaagaacattttgtattgttttcattcgagtcattgtaattcacttttattctaaattatacaacttcataggtgttttgat 10576567  T
Q  263 tctttttagtgagaaatcgtgtaaatcggcaaaaagagacatca 306  Q
    ||||| |||||||||||  |||||||||| ||||  ||||||||    
T  10576568 tctttctagtgagaaattatgtaaatcggaaaaacaagacatca 10576611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 225 - 349
Target Start/End: Original strand, 29437548 - 29437673
Alignment:
Q  225 ttttattctaaatcatacaacttcataggtgttttgagtctttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggagg-ttgagaata 323  Q
    |||||| ||||||||| ||||||||||| ||||||||||||||||| ||||||||| ||||||||||||| |  |||||||| ||| ||| | ||| |||    
T  29437548 ttttatcctaaatcatgcaacttcatagctgttttgagtctttttaatgagaaatcatgtaaatcggcaagacaagacatcacgtgaaggatcgaggata 29437647  T
Q  324 tgaagattgaagttcaatggttctta 349  Q
    ||||||||||||||||||||||||||    
T  29437648 tgaagattgaagttcaatggttctta 29437673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 224 - 376
Target Start/End: Original strand, 13064502 - 13064655
Alignment:
Q  224 cttttattctaaatcatacaacttcataggtgttttgagtctttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggagg-ttgagaat 322  Q
    |||||||| |||||||| ||| || |||||||||||||||| ||||||| ||||||| ||||||| ||||||   |||||||| ||| ||| |  || ||    
T  13064502 cttttattataaatcatgcaattttataggtgttttgagtcattttagtaagaaatcatgtaaattggcaaatcaagacatcacgtgaaggatcaaggat 13064601  T
Q  323 atgaagattgaagttcaatggttcttataaggtatttgaagacaatacaaagtg 376  Q
    | || |||||||||||||||||||||| | |||||||||||||||| |||||||    
T  13064602 aagacgattgaagttcaatggttcttagagggtatttgaagacaattcaaagtg 13064655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 171 - 376
Target Start/End: Original strand, 23353646 - 23353847
Alignment:
Q  171 tcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtcttttta 270  Q
    |||||||||| || ||||||||||||| |||||||| | ||||||||| |||  ||||||  |||||| | ||  |||||  ||||||||||||||||||    
T  23353646 tcaatggtttaaggaactttttgtattgttttcattcgagtcgttgtaattcaattttata-taaatcgtgcacattcatgagtgttttgagtcttttta 23353744  T
Q  271 gtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggaggttgagaatatgaagattgaagttcaatggttcttataaggtatttgaagacaatac 370  Q
    |||||||||| |||||||||||||||  ||||||||  || |||   || ||||||||||| ||| ||||| |   ||| ||||| ||| ||||||||||    
T  23353745 gtgagaaatcatgtaaatcggcaaaacaagacatcacatgaaggacaaggatatgaagattaaagatcaatag---ttagaaggtcttttaagacaatac 23353841  T
Q  371 aaagtg 376  Q
    ||||||    
T  23353842 aaagtg 23353847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 166 - 349
Target Start/End: Original strand, 9288228 - 9288412
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    |||| ||||||||||||| |||   ||||||| |||||||||| ||| || || |||  ||||||  ||||||||  | || |||| || |||| |||||    
T  9288228 agttttcaatggtttgaggaacaaattgtattgttttcatttgagtcattataattcatttttatcataaatcatgtacctccatatgtttttttagtct 9288327  T
Q  266 ttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggagg-ttgagaatatgaagattgaagttcaatggttctta 349  Q
    ||||||||||||||| |||||||||||||||  |||||||||||| ||| |  || |||||||||||||||  ||||||||||||    
T  9288328 ttttagtgagaaatcatgtaaatcggcaaaacaagacatcaagtgaaggatcaaggatatgaagattgaagaccaatggttctta 9288412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 233 - 372
Target Start/End: Original strand, 33519115 - 33519255
Alignment:
Q  233 taaatcatacaacttcataggtgttttgagtctttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggag-gttgagaatatgaagatt 331  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||   | |||||   || ||  ||||| |||||| ||||    
T  33519115 taaatcatgcaacttcgtaggtgttttgagtctttttagtgagaaatcatgtgaatcggcaaatcaaaacatctcttgaagaattgaggatatgacgatt 33519214  T
Q  332 gaagttcaatggttcttataaggtatttgaagacaatacaa 372  Q
    |||| ||||| ||||||| ||||| ||||||||||||||||    
T  33519215 gaagatcaatcgttcttagaaggtctttgaagacaatacaa 33519255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 166 - 378
Target Start/End: Original strand, 19601816 - 19602029
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    |||||||| ||||||||| |||||||| |||| ||||||||    | |||||| ||| ||||||| ||||||||| ||||| ||||||| |||| ||  |    
T  19601816 agttgtcattggtttgaggaactttttctatttttttcattcaaattgttgtaattcacttttatcctaaatcatgcaactccataggtatttttagcgt 19601915  T
Q  266 ttt-tagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtg-gaggttgagaatatgaagattgaagttcaatggttcttataaggtatttgaag 363  Q
    ||| |||||||||||| ||||||||  ||||   |||||||| |||  || | ||| |||||| ||||||||  |||||||||||| ||||| |||||||    
T  19601916 tttctagtgagaaatcatgtaaatcaacaaatcaagacatcacgtgaaagatcgaggatatgatgattgaag-acaatggttcttaaaaggtttttgaag 19602014  T
Q  364 acaatacaaagtgga 378  Q
    |||||| ||||||||    
T  19602015 acaataaaaagtgga 19602029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 166 - 297
Target Start/End: Original strand, 21167747 - 21167878
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    ||||||| ||| ||| || ||| ||||||||| |||||||| | || |||||| ||  ||||||| |||||  ||  |||||||||||||||||||| ||    
T  21167747 agttgtccatgttttaaggaacattttgtattgttttcattcgagttgttgtaatttacttttatcctaaaatatgtaacttcataggtgttttgagact 21167846  T
Q  266 ttttagtgagaaatcgtgtaaatcggcaaaaa 297  Q
    ||||||||||||||| |||||||||| |||||    
T  21167847 ttttagtgagaaatcatgtaaatcggaaaaaa 21167878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 174 - 295
Target Start/End: Complemental strand, 13275833 - 13275712
Alignment:
Q  174 atggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtctttttagtg 273  Q
    |||||||||||||| | ||||||| |||||||| | |||||| || ||| |||| || | |||||||||||||   ||||||||||||||||||||| ||    
T  13275833 atggtttgagaaacatgttgtattgttttcattcgagtcgttataattcactttcatcccaaatcatacaactctgtaggtgttttgagtctttttattg 13275734  T
Q  274 agaaatcgtgtaaatcggcaaa 295  Q
      ||||| ||||| ||||||||    
T  13275733 ctaaatcatgtaattcggcaaa 13275712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 246 - 295
Target Start/End: Complemental strand, 13206692 - 13206643
Alignment:
Q  246 ttcataggtgttttgagtctttttagtgagaaatcgtgtaaatcggcaaa 295  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  13206692 ttcataggtgttttgagtcattttagtgagaaatcatgtaaatcggcaaa 13206643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 213 - 376
Target Start/End: Original strand, 15192268 - 15192432
Alignment:
Q  213 gttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtctttt-tagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtgg 311  Q
    |||||| ||| ||||||| ||| ||| | || || |||||||||||||||| |||| |||||||||||| ||||||||| ||||   |||||||| |||     
T  15192268 gttgtaattcacttttatcctagatcgtgcagctccataggtgttttgagtgttttgtagtgagaaatcatgtaaatcgacaaaccaagacatcacgtga 15192367  T
Q  312 aggttga-gaatatgaagattgaagttcaatggttcttataaggtatttgaagacaatacaaagtg 376  Q
    ||| | | | ||||||| |||||||  |||||||||||| |||||  ||||||||||| |||||||    
T  15192368 aggatcaaggatatgaa-attgaagaccaatggttcttagaaggttgttgaagacaattcaaagtg 15192432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 174 - 286
Target Start/End: Complemental strand, 17339902 - 17339790
Alignment:
Q  174 atggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtctttttagtg 273  Q
    |||| ||||| ||| ||||||||  ||||||||   ||| ||||| |||  |||||| ||||||||| ||| ||||||||||||||||  ||||||||||    
T  17339902 atggattgaggaacattttgtatctttttcattctagtctttgtaattcaattttatcctaaatcatgcaatttcataggtgttttgaagctttttagtg 17339803  T
Q  274 agaaatcgtgtaa 286  Q
    ||| |||||||||    
T  17339802 agagatcgtgtaa 17339790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 166 - 373
Target Start/End: Complemental strand, 34864388 - 34864184
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    |||||||||||||||||| ||| | |  |||| |||||| | ||  | ||||| ||| ||||||| |||||| ||  |||| |||  ||||||||||| |    
T  34864388 agttgtcaatggtttgaggaacgtatcatattgttttcactcgt--cattgtaattcacttttatcctaaattatgaaactccat--gtgttttgagtgt 34864293  T
Q  266 ttt-tagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggaggttgaga-atatgaagattgaagttcaatggttcttataaggtatttgaag 363  Q
    ||| |||||||||||| ||||||||| ||||   |||||||| ||| ||| | | | ||||| |||||||||| |||||||||||| ||||| |||| ||    
T  34864292 tttgtagtgagaaatcatgtaaatcgacaaatcaagacatcacgtgaaggatcaaagatatggagattgaagt-caatggttcttagaaggtttttgtag 34864194  T
Q  364 acaatacaaa 373  Q
    ||||||||||    
T  34864193 acaatacaaa 34864184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 280
Target Start/End: Original strand, 22119664 - 22119778
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    |||||||||||||||||| |||   ||||| | ||||| || | ||| ||||| ||  ||||||  | ||||||| ||||| ||||||| ||||||||||    
T  22119664 agttgtcaatggtttgaggaacaaattgtaatgttttcgttcgagtcattgtaatttacttttacccaaaatcatgcaactacataggtattttgagtct 22119763  T
Q  266 ttttagtgagaaatc 280  Q
    |||||||||||||||    
T  22119764 ttttagtgagaaatc 22119778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 213 - 376
Target Start/End: Complemental strand, 17026746 - 17026582
Alignment:
Q  213 gttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtctttt-tagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtgg 311  Q
    |||||| ||| ||||||| ||| ||||| ||||| |||||||||||||||| |||| |||| | ||||| ||||||||| ||||   ||||||||  ||     
T  17026746 gttgtaattcacttttatcctagatcatgcaactccataggtgttttgagtgttttgtagtcataaatcatgtaaatcgacaaattaagacatcacatga 17026647  T
Q  312 agg-ttgagaatatgaagattgaagttcaatggttcttataaggtatttgaagacaatacaaagtg 376  Q
    ||| |  || ||||||  ||| ||||| ||||||||||| || || ||||||||||||||||||||    
T  17026646 aggatcaagtatatgagaatttaagtt-aatggttcttaaaaagtttttgaagacaatacaaagtg 17026582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 163 - 295
Target Start/End: Original strand, 27302793 - 27302925
Alignment:
Q  163 agaagttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgag 262  Q
    ||||||||||||||||||||| ||| ||||||||| |||||| | | ||| ||||| |||  || ||| ||| ||||| ||||||||| |||||||| ||    
T  27302793 agaagttgtcaatggtttgaggaacattttgtattgttttcactcgagtcattgtaattcaattatatactagatcatgcaacttcat-ggtgtttttag 27302891  T
Q  263 tctttt-tagtgagaaatcgtgtaaatcggcaaa 295  Q
    | |||| ||||||  |||| ||||||||| ||||    
T  27302892 tattttgtagtgatgaatcatgtaaatcgacaaa 27302925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 372
Target Start/End: Original strand, 46647211 - 46647420
Alignment:
Q  163 agaagttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgag 262  Q
    |||||||||||||||||| |  ||  ||||||||| ||||||||   |||| |||| ||| ||||||| ||||||||| ||||| |||| |||  |||||    
T  46647211 agaagttgtcaatggtttcaagaatattttgtattgttttcattctagtcggtgtaattcacttttatcctaaatcatgcaactccataagtg--ttgag 46647308  T
Q  263 -tctttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggaggttgaga-atatgaagattgaagttcaatggttcttataaggtatttg 360  Q
     | ||||||  |||||||| | |||||| ||||||  |||||||| |||  || | | | ||||||| | ||||| ||||||||||||| ||||| |||     
T  46647309 ttatttttatcgagaaatcatataaatcagcaaaacaagacatcacgtgagggatcaaagatatgaaaaatgaagatcaatggttcttaaaaggttttta 46647408  T
Q  361 aagacaatacaa 372  Q
    |||| |||||||    
T  46647409 aagataatacaa 46647420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 251 - 376
Target Start/End: Complemental strand, 12111337 - 12111213
Alignment:
Q  251 aggtgttttgagtctttt-tagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggaggttgagaatatgaagattgaagttcaatggttctta 349  Q
    ||||||||||||| |||| ||||||||| || ||||||||| ||||   || ||||| ||| ||| | |  ||||||| |||||||| ||||||||||||    
T  12111337 aggtgttttgagtgttttgtagtgagaa-tcttgtaaatcgacaaatcaagtcatcacgtgaaggatcaagatatgaatattgaagt-caatggttctta 12111240  T
Q  350 taaggtatttgaagacaatacaaagtg 376  Q
    |||||| ||| |||| |||||||||||    
T  12111239 taaggttttttaagataatacaaagtg 12111213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 249 - 291
Target Start/End: Complemental strand, 12243740 - 12243698
Alignment:
Q  249 ataggtgttttgagtctttttagtgagaaatcgtgtaaatcgg 291  Q
    |||||||||||||||| ||||||||||||||| ||||||||||    
T  12243740 ataggtgttttgagtcattttagtgagaaatcatgtaaatcgg 12243698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 166 - 295
Target Start/End: Complemental strand, 25315328 - 25315198
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagt-c 264  Q
    ||||||||||| |||||| ||| | ||||||| |||||| ||| ||||||||| ||   |||||| ||| ||||| ||||| |||| | |||||||||      
T  25315328 agttgtcaatgctttgaggaacatattgtattgttttcacttgagtcgttgtaattaagttttatcctagatcatgcaactccatatgggttttgagtaa 25315229  T
Q  265 tttttagtgagaaatcgtgtaaatcggcaaa 295  Q
    ||| ||||||| |||| ||||||||| ||||    
T  25315228 tttgtagtgaggaatcatgtaaatcgacaaa 25315198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 280
Target Start/End: Complemental strand, 10320316 - 10320201
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgag-tc 264  Q
    |||||| ||| ||| ||||||| | ||||||| |||||| | | ||||||||| ||| ||||||| ||| | ||| ||||| |||||||||||| || |     
T  10320316 agttgttaatagttagagaaacatattgtattcttttcactcgagtcgttgtaattcacttttatcctagaccatgcaactccataggtgttttaagctt 10320217  T
Q  265 tttttagtgagaaatc 280  Q
    ||| ||||||||||||    
T  10320216 tttgtagtgagaaatc 10320201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 286
Target Start/End: Original strand, 30624953 - 30625004
Alignment:
Q  235 aatcatacaacttcataggtgttttgagtctttttagtgagaaatcgtgtaa 286  Q
    |||||| ||| ||||||||||||||||||||||||| ||| ||||| |||||    
T  30624953 aatcatgcaatttcataggtgttttgagtctttttattgaaaaatcatgtaa 30625004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 289
Target Start/End: Original strand, 4732770 - 4732891
Alignment:
Q  168 ttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtcttt 267  Q
    ||||||||  |||||  ||| |||| |||| |||||||||| ||||||||| ||    ||||| ||||| |||||||||||| | |  |||| |||||||    
T  4732770 ttgtcaatcctttgatgaacattttatattgttttcatttgagtcgttgtaatttaaatttatcctaaaccatacaacttcacaagcttttttagtcttt 4732869  T
Q  268 ttagtgagaaatcgtgtaaatc 289  Q
    |||  |||||||| ||||||||    
T  4732870 ttaacgagaaatcatgtaaatc 4732891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 375
Target Start/End: Complemental strand, 5906706 - 5906649
Alignment:
Q  318 agaatatgaagattgaagttcaatggttcttataaggtatttgaagacaatacaaagt 375  Q
    ||||||| |||||| ||| | ||||||||||| ||||| |||||||| ||||||||||    
T  5906706 agaatattaagatttaagattaatggttcttagaaggtttttgaagataatacaaagt 5906649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 376
Target Start/End: Complemental strand, 47024703 - 47024651
Alignment:
Q  323 atgaagattgaagttcaatggttcttataaggtatttgaagacaatacaaagtg 376  Q
    |||||||||||||| |||||||||||| ||||| |||||| ||| |||||||||    
T  47024703 atgaagattgaagt-caatggttcttagaaggtttttgaaaacagtacaaagtg 47024651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 459 - 503
Target Start/End: Original strand, 32650737 - 32650781
Alignment:
Q  459 aaatcaatgaaaggaaagagtagatgaattgagatgatgagatcg 503  Q
    |||| ||||||||||||||||| | ||||||||||| ||||||||    
T  32650737 aaataaatgaaaggaaagagtaaacgaattgagatgctgagatcg 32650781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 8e-38; HSPs: 36)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 168 - 391
Target Start/End: Original strand, 20694660 - 20694884
Alignment:
Q  168 ttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtcttt 267  Q
    |||||||||||||||| ||||||||||||| |||||||| | ||| ||||| |||  |||||| | |||| || ||||| |||| |||||||||||||||    
T  20694660 ttgtcaatggtttgaggaactttttgtattgttttcattcgagtcattgtaattcagttttatcccaaattattcaactgcatatgtgttttgagtcttt 20694759  T
Q  268 ttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggaggttga-gaatatgaagattgaagttcaatggttcttataaggtatttgaagaca 366  Q
    ||||| ||||||| |||||||||||||||  ||||||||  || ||| | | | | || |||||||||| | ||||||||||| ||||||||||||||||    
T  20694760 ttagtaagaaatcatgtaaatcggcaaaacaagacatcatatgaaggataacggacattaagattgaagataaatggttcttagaaggtatttgaagaca 20694859  T
Q  367 atacaaagtggaaaagaaaatcatt 391  Q
    |||| |||   |||| |||||||||    
T  20694860 ataccaagcaaaaaaaaaaatcatt 20694884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 166 - 361
Target Start/End: Complemental strand, 24411026 - 24410830
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    |||||||||||||||||| ||  ||||||||| |||||||||| ||||||||| |||  |||||| ||||||| | ||||||   ||||||||||||| |    
T  24411026 agttgtcaatggtttgaggaaaattttgtattgttttcatttgagtcgttgtaattcagttttatcctaaatcgtgcaacttgcgaggtgttttgagtat 24410927  T
Q  266 ttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggagg-ttgagaatatgaagattgaagttcaatggttcttataaggtatttga 361  Q
    ||||||||||||||| ||| ||| |||||||  ||||||||  || ||| | ||| || |||||||| ||| |||||||||||||||||||||||||    
T  24410926 ttttagtgagaaatcatgtcaattggcaaaataagacatcacatgaaggatcgaggatctgaagattcaagatcaatggttcttataaggtatttga 24410830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 166 - 372
Target Start/End: Original strand, 19331529 - 19331735
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    |||||||||| ||||||||||||||||||||| | |||||| | ||||||||| ||   |||||| ||||||||| ||| | |||  |||||||||||||    
T  19331529 agttgtcaattgtttgagaaactttttgtattgtgttcattcgagtcgttgtaatttagttttatcctaaatcatgcaattccat--gtgttttgagtct 19331626  T
Q  266 ttttagtgagaaatcgtgtaaatcggcaaaaagaga-catcaagtggagg-ttgagaatatgaagattgaagttcaatggttcttataaggtatttgaag 363  Q
    |||| |||||||||| |||||||||  ||||| | | ||||||||| ||| | ||| |||||||||||||| ||||||| || ||| |||  ||||||||    
T  19331627 tttttgtgagaaatcatgtaaatcgttaaaaacaaagcatcaagtgaaggatcgaggatatgaagattgaaattcaatgatttttagaagacatttgaag 19331726  T
Q  364 acaatacaa 372  Q
    |||||||||    
T  19331727 acaatacaa 19331735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 166 - 310
Target Start/End: Complemental strand, 19763987 - 19763845
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    |||| |||| |||||| | ||||||||||||| |||||||||| | |  |||| |||  |||||| ||||||||| |||||||||  |||||||||||||    
T  19763987 agttctcaagggtttgtggaactttttgtattgttttcatttgaggcaatgtagttcagttttatcctaaatcatgcaacttcat--gtgttttgagtct 19763890  T
Q  266 ttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtg 310  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||    
T  19763889 ttttagtgagaaatcatgtaaatcggcaaaacgagacatcaagtg 19763845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 166 - 376
Target Start/End: Complemental strand, 7742966 - 7742755
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    |||||||||||||||||  ||| ||||||||| ||||| || | ||| ||||| ||| ||||||| |||||||||  ||  ||||| ||||||||||| |    
T  7742966 agttgtcaatggtttgaagaacattttgtattgttttcgttcgagtctttgtaattcacttttatcctaaatcatgtaaaatcatatgtgttttgagttt 7742867  T
Q  266 ttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggag-gttgagaatatgaagattgaagttcaatggttcttataaggtatttgaaga 364  Q
    ||||| ||||||||| |||||||| | ||||  | |||||| ||| ||  | ||  ||||||||| ||||| ||||||||||||| ||||| ||||||||    
T  7742866 ttttaatgagaaatcatgtaaatcagtaaaacaaaacatcacgtgaagaatcgaagatatgaagactgaagatcaatggttcttagaaggtctttgaaga 7742767  T
Q  365 caatacaaagtg 376  Q
    ||||||||||||    
T  7742766 caatacaaagtg 7742755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 166 - 372
Target Start/End: Original strand, 16634064 - 16634272
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    |||||||||||||||||||||| | ||||||| |||||| | | ||||||||| ||| ||||||||||||||||| |||||  ||||||||||||| | |    
T  16634064 agttgtcaatggtttgagaaacatattgtattgttttcactcgagtcgttgtaattcacttttattctaaatcatgcaactctataggtgttttgaatgt 16634163  T
Q  266 ttt-tagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggagg-ttgagaatatgaagattgaagttcaatggttcttataaggtatttgaag 363  Q
    |||  ||||||||||| | ||||||| ||||   |||||||| ||| |||    | ||||||||| ||||||  |||||||||||| ||||| |||||||    
T  16634164 tttgcagtgagaaatcatataaatcgacaaatcaagacatcacgtgaaggaacaataatatgaagtttgaagaccaatggttcttagaaggtttttgaag 16634263  T
Q  364 acaatacaa 372  Q
    | |||||||    
T  16634264 aaaatacaa 16634272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 233 - 368
Target Start/End: Original strand, 26070559 - 26070695
Alignment:
Q  233 taaatcatacaacttcataggtgttttgagtctttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggagg-ttgagaatatgaagatt 331  Q
    |||||||| ||||| |||| |||||||||||||||||||||||||||| ||||||| |||||||  ||||||||  || ||| |  || |||||||||||    
T  26070559 taaatcatgcaactccataagtgttttgagtctttttagtgagaaatcatgtaaattggcaaaacaagacatcacatgaaggatcaaggatatgaagatt 26070658  T
Q  332 gaagttcaatggttcttataaggtatttgaagacaat 368  Q
    |||| || ||||||| |||||||| ||||||||||||    
T  26070659 gaagatctatggttcgtataaggtttttgaagacaat 26070695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 166 - 372
Target Start/End: Complemental strand, 11274428 - 11274219
Alignment:
Q  166 agttgtcaatggtttgagaaa-ctttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtc 264  Q
    ||||||||||||||||||||| | | ||||||| |||||| ||| | ||||| |  |  ||||||| ||||||||| ||||| ||||||||||||||||     
T  11274428 agttgtcaatggtttgagaaaacatattgtattgttttcacttgagccgttgcaacttgcttttatcctaaatcatgcaactccataggtgttttgagtg 11274329  T
Q  265 tttt-tagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggagg-ttgagaatatgaagattgaagttcaatggttcttataaggtatttgaa 362  Q
    |||| |||| ||||||| |||| |||| ||||   ||||||||  || ||| |  || |||||||||||||||  |||||||||||| ||||| ||||||    
T  11274328 ttttgtagtaagaaatcatgtatatcgacaaatcaagacatcacatgaaggatcaaggatatgaagattgaagaccaatggttcttagaaggtctttgaa 11274229  T
Q  363 gacaatacaa 372  Q
    ||||||||||    
T  11274228 gacaatacaa 11274219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 166 - 371
Target Start/End: Original strand, 20083483 - 20083691
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtc- 264  Q
    |||||||||| ||||||| ||| |||| |||| |||| ||| | ||  ||||| |||  || ||| ||||||||| ||| | |||||||||||||||||     
T  20083483 agttgtcaatagtttgaggaacattttttattgtttttattcgagtatttgtaattcagttctatcctaaatcatgcaattccataggtgttttgagtct 20083582  T
Q  265 -tttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtg-gaggttgagaatatgaagattgaagttcaatggttcttataaggtatttgaa 362  Q
     |||||||||| ||||  |||||||||||||||  | |||||| |||  || || || ||||||| | ||||||||||||||| |||||| |||||||||    
T  20083583 ttttttagtgaaaaattatgtaaatcggcaaaacaaaacatcacgtgaaagattaaggatatgaaaaatgaagttcaatggtttttataaagtatttgaa 20083682  T
Q  363 gacaataca 371  Q
     ||||||||    
T  20083683 aacaataca 20083691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 166 - 376
Target Start/End: Complemental strand, 23157885 - 23157689
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    |||||||||||||||||| ||||||| ||||| |||||||||| ||||||||| ||| |||||||  |||||||| ||| | |||||||||||| ||       
T  23157885 agttgtcaatggtttgaggaacttttggtattgttttcatttgagtcgttgtaattcacttttatcataaatcatgcaaatgcataggtgttttaag--- 23157789  T
Q  266 ttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggagg-ttgagaatatgaagattgaagttcaatggttcttataaggtatttgaaga 364  Q
     ||||           |||||||||||||||  | ||| |||||| ||| |  || |||| |||||||||||||||||||||||||||||||||| ||||    
T  23157788 -ttta-----------tgtaaatcggcaaaacaaaacaccaagtgaaggataaaggatattaagattgaagttcaatggttcttataaggtatttaaaga 23157701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 233 - 291
Target Start/End: Original strand, 25367679 - 25367737
Alignment:
Q  233 taaatcatacaacttcataggtgttttgagtctttttagtgagaaatcgtgtaaatcgg 291  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  25367679 taaatcatgcaacttcataggtgttttgagtctttttagtgagaaatcatgtaaatcgg 25367737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 199 - 329
Target Start/End: Original strand, 30790827 - 30790957
Alignment:
Q  199 ttttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtctttttagtgagaaatcgtgtaaatcggcaaaaag 298  Q
    |||| ||||| |||||| || |||  |||||| |||||| || ||||||||| ||||||||||||||||||||||| ||||  ||||||||||||| |      
T  30790827 tttttatttgagtcgttataattcagttttatcctaaattatccaacttcattggtgttttgagtctttttagtgaaaaattatgtaaatcggcaacaca 30790926  T
Q  299 agacatcaagtggaggttgagaatatgaaga 329  Q
    |||||||| ||| ||| |||| |||||||||    
T  30790927 agacatcatgtgaaggatgaggatatgaaga 30790957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 171 - 290
Target Start/End: Complemental strand, 25594784 - 25594664
Alignment:
Q  171 tcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtctttt-t 269  Q
    ||||||||||||| ||| | ||||||| |||||| | | || ||||||||||  |||||| |||||| || |||||||||| ||||||||||| |||| |    
T  25594784 tcaatggtttgaggaacatattgtattgttttcactggagttgttgtatttcatttttatcctaaatgatgcaacttcatatgtgttttgagtgttttat 25594685  T
Q  270 agtgagaaatcgtgtaaatcg 290  Q
    ||||||||||| |||||||||    
T  25594684 agtgagaaatcatgtaaatcg 25594664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 171 - 260
Target Start/End: Original strand, 25680619 - 25680708
Alignment:
Q  171 tcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttg 260  Q
    ||||||||||||| ||| | ||||||| |||||| | | ||||||||| |||  |||||||||||||||| |||||||||||||||||||    
T  25680619 tcaatggtttgaggaacatattgtattgttttcactcgagtcgttgtaattcaattttattctaaatcatgcaacttcataggtgttttg 25680708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 170 - 376
Target Start/End: Original strand, 17027549 - 17027756
Alignment:
Q  170 gtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtctttt- 268  Q
    ||||| |||||||| ||| | ||| ||| |||||| ||| ||||||||| ||| ||||||| ||||||||  ||||| |||||||||||||| | ||||     
T  17027549 gtcaagggtttgaggaacatattgaattgttttcacttgagtcgttgtaattcacttttatcctaaatcacgcaactccataggtgttttgactgttttg 17027648  T
Q  269 tagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggaggttgaga-atatgaagattgaagttcaatggttcttataaggtatttgaagacaa 367  Q
       ||||||||| |||||||||  |||   |||||||| ||| | | | | | ||||||||||||||||| |||| |||||| |||||  ||||||||||    
T  17027649 ccatgagaaatcatgtaaatcgaaaaatcaagacatcacgtgcaagatcaaagatatgaagattgaagtt-aatgcttcttagaaggttcttgaagacaa 17027747  T
Q  368 tacaaagtg 376  Q
    |||||||||    
T  17027748 tacaaagtg 17027756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 223 - 293
Target Start/End: Complemental strand, 11997934 - 11997863
Alignment:
Q  223 ccttttattctaaatcatacaacttcataggtgttttgag-tctttttagtgagaaatcgtgtaaatcggca 293  Q
    |||||||| ||||||||| ||||||||||||||||||||| | |||||||||||||| | ||||||||||||    
T  11997934 ccttttatactaaatcatgcaacttcataggtgttttgagttttttttagtgagaaaacatgtaaatcggca 11997863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 210 - 373
Target Start/End: Original strand, 18178162 - 18178328
Alignment:
Q  210 gtcgttgtatttcccttttattctaaatcata-caacttcataggtgttttgagtctttttagtgagaaatcgtgtaaatcggcaaaaa-gagacatcaa 307  Q
    ||||||||| |||  |||||| |||||||||  ||||||||||||| |||| |||||||||||||||||||| ||||||| || |||||  ||||| |      
T  18178162 gtcgttgtaattcagttttatcctaaatcattgcaacttcataggtatttttagtctttttagtgagaaatcatgtaaattggaaaaaacaagacaccgc 18178261  T
Q  308 gtggagg-ttgagaatatgaagattgaagttcaatggttcttataaggtatttgaagacaatacaaa 373  Q
     || ||| | ||| |||||||||||||||  |||| ||||||  ||||| |||||||| ||||||||    
T  18178262 atgaaggatcgaggatatgaagattgaagaccaattgttcttggaaggtctttgaagataatacaaa 18178328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 166 - 268
Target Start/End: Original strand, 18222511 - 18222613
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    |||||||||||||||||||||| | ||||||| |||| | | | ||| ||||| ||| ||||||| ||||||||| ||| | |||||||||||||||| |    
T  18222511 agttgtcaatggtttgagaaacatattgtattgttttaactcgagtcattgtaattcacttttatcctaaatcatgcaaatccataggtgttttgagtgt 18222610  T
Q  266 ttt 268  Q
    |||    
T  18222611 ttt 18222613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 248 - 373
Target Start/End: Complemental strand, 22643919 - 22643793
Alignment:
Q  248 cataggtgttttgagtctttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggagg-ttgagaatatgaagattgaagttcaatggttc 346  Q
    ||||||||| ||| ||||| ||||||||||||| || | ||||||||||  ||||| |||||||||| | |||  ||| |||||| ||  ||| ||||||    
T  22643919 cataggtgtcttgtgtcttgttagtgagaaatcatgcatatcggcaaaacaagacaccaagtggaggatcgagggtataaagattaaatatcagtggttc 22643820  T
Q  347 ttataaggtatttgaagacaatacaaa 373  Q
    ||| |||||||||||| ||||||||||    
T  22643819 ttaaaaggtatttgaatacaatacaaa 22643793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 213 - 376
Target Start/End: Complemental strand, 26330117 - 26329955
Alignment:
Q  213 gttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtctttt-tagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtgg 311  Q
    |||||| ||||||||||| ||| ||||| |||||||||||||||||||||| |||| ||||  |||||| ||||||| |  |||   ||||||||  ||     
T  26330117 gttgtaattcccttttatcctagatcatgcaacttcataggtgttttgagtgttttgtagt--gaaatcatgtaaattgaaaaatcaagacatcacatga 26330020  T
Q  312 agg-ttgagaatatgaagattgaagttcaatggttcttataaggtatttgaagacaatacaaagtg 376  Q
    ||| |  || ||||||||||||||| |||||||| |||| ||||| ||| ||||||||||||||||    
T  26330019 aggatcaaggatatgaagattgaag-tcaatggtccttagaaggttttttaagacaatacaaagtg 26329955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 166 - 376
Target Start/End: Complemental strand, 12340111 - 12339900
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    |||||||||||||||||| ||| | || ||||||||||| ||||||| ||||| |||  |||||| ||| ||||| |||||||||| || ||||| || |    
T  12340111 agttgtcaatggtttgaggaacatattatattattttcacttgtgtcattgtaattcagttttatactagatcatgcaacttcatatgtattttgcgtgt 12340012  T
Q  266 ttt-tagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggaggttgagaatatgaag-attgaagttcaatggttcttataaggtatttgaag 363  Q
    ||| |||| || |||| | ||||||  ||||   |||||||| ||| ||| | | |  |||||| ||||||  |||| |||||||| |||||  ||||||    
T  12340011 tttgtagtaaggaatcatataaatcaacaaatcaagacatcacgtgaaggatca-aggatgaagaattgaaaatcaagggttcttagaaggtcgttgaag 12339913  T
Q  364 acaatacaaagtg 376  Q
    |||||||||||||    
T  12339912 acaatacaaagtg 12339900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 166 - 288
Target Start/End: Original strand, 24841771 - 24841894
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    |||| ||||||||||||| ||| | ||||||| |||||| | | |||||||||  || ||||||| ||| |||||  |||| |||||||||||| ||| |    
T  24841771 agttttcaatggtttgaggaacatattgtattgttttcactcgagtcgttgtaagtcacttttatcctagatcatggaactccataggtgtttttagtgt 24841870  T
Q  266 ttt-tagtgagaaatcgtgtaaat 288  Q
    ||| |||||||||||| |||||||    
T  24841871 tttgtagtgagaaatcatgtaaat 24841894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 280
Target Start/End: Complemental strand, 15697433 - 15697319
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    ||||||| |||||| ||| ||||||||||||| |||||||||| | ||||| | |||  |||||| | ||||||| || ||  |||||| ||||||||||    
T  15697433 agttgtcgatggttagaggaactttttgtattgttttcatttgagacgttgcaattcagttttatccgaaatcatgcatctctataggtattttgagtct 15697334  T
Q  266 ttttagtgagaaatc 280  Q
    ||||| | |||||||    
T  15697333 ttttattaagaaatc 15697319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 130 - 285
Target Start/End: Complemental strand, 16603757 - 16603590
Alignment:
Q  130 tttagtgtatttccttgcatttgaaggcaaattagaagt----------tgtcaatggtttgagaaact-ttttgtattattttcatttgtgtcgttgta 218  Q
    ||||||||||||||||| ||||||||| |||||||||||          |||| ||| |||||| |||| |||| |||| |||| ||| | |||||||||    
T  16603757 tttagtgtatttccttgtatttgaaggtaaattagaagtgaattagagttgtcgatgatttgaggaactcttttttattgttttgattcgagtcgttgta 16603658  T
Q  219 tttcccttttattctaaatcatacaacttcataggtgttttgagtctttt-tagtgagaaatcgtgta 285  Q
     ||   |||||  ||||||||| ||| |||||||||||||||||| |||| |||||||||||| ||||    
T  16603657 attaaattttagcctaaatcatgcaatttcataggtgttttgagtgttttctagtgagaaatcatgta 16603590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 191 - 287
Target Start/End: Complemental strand, 29150977 - 29150882
Alignment:
Q  191 ttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtctttttagtgagaaatcgtgtaaa 287  Q
    |||||||||||||| |||  || ||||| |||  ||||||  |||||||| ||| |||||| ||||||||||| |||||||||||||||| ||||||    
T  29150977 ttgtattattttcacttgaatcattgtaattcatttttatcttaaatcatgcaatttcataagtgttttgagt-tttttagtgagaaatcttgtaaa 29150882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 321 - 376
Target Start/End: Complemental strand, 18452752 - 18452697
Alignment:
Q  321 atatgaagattgaagttcaatggttcttataaggtatttgaagacaatacaaagtg 376  Q
    ||||||| ||||||| ||||||||||||||||||| ||| || |||||||||||||    
T  18452752 atatgaaaattgaagatcaatggttcttataaggttttttaaaacaatacaaagtg 18452697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 321 - 376
Target Start/End: Original strand, 30072290 - 30072345
Alignment:
Q  321 atatgaagattgaagttcaatggttcttataaggtatttgaagacaatacaaagtg 376  Q
    ||||||||||||||| | ||||||||||| ||||| ||| ||||||||||||||||    
T  30072290 atatgaagattgaagattaatggttcttaaaaggtttttaaagacaatacaaagtg 30072345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 166 - 260
Target Start/End: Complemental strand, 17382132 - 17382038
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttg 260  Q
    |||||||||||||||||| ||| | ||||||| |||||| |    |||||||||||| ||||||| ||||||||| |||||| ||  ||||||||    
T  17382132 agttgtcaatggtttgaggaacatattgtattgttttcactcaaatcgttgtatttcacttttatcctaaatcatgcaactttatgagtgttttg 17382038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 95 - 168
Target Start/End: Original strand, 25367554 - 25367627
Alignment:
Q  95 gtgatggaataacattagatatttttagctatctgtttagtgtatttccttgcatttgaaggcaaattagaagt 168  Q
    |||||||||||||||  ||  |||||| |||| | |||||| |||||| ||||||||||||| |||||||||||    
T  25367554 gtgatggaataacatatgacgtttttaactatgtttttagtatatttctttgcatttgaaggaaaattagaagt 25367627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 324 - 376
Target Start/End: Complemental strand, 19763823 - 19763771
Alignment:
Q  324 tgaagattgaagttcaatggttcttataaggtatttgaagacaatacaaagtg 376  Q
    |||||||||||| |||| |||||||| ||||| |||||||| |||||||||||    
T  19763823 tgaagattgaagatcaagggttcttagaaggtttttgaagataatacaaagtg 19763771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 250 - 306
Target Start/End: Complemental strand, 24279638 - 24279582
Alignment:
Q  250 taggtgttttgagtctttttagtgagaaatcgtgtaaatcggcaaaaagagacatca 306  Q
    ||||||||||||||| ||||||||||||||| | ||||||| |||||  ||||||||    
T  24279638 taggtgttttgagtcattttagtgagaaatcatataaatcgacaaaacaagacatca 24279582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 250 - 306
Target Start/End: Original strand, 24382576 - 24382632
Alignment:
Q  250 taggtgttttgagtctttttagtgagaaatcgtgtaaatcggcaaaaagagacatca 306  Q
    ||||||||||||||| ||||||||||||||| | ||||||| |||||  ||||||||    
T  24382576 taggtgttttgagtcattttagtgagaaatcatataaatcgacaaaacaagacatca 24382632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 373
Target Start/End: Complemental strand, 16622764 - 16622565
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    |||||||||||||||||| ||| | ||||||| | |||| |    | |||||| | | ||||||| ||| ||||| |||||||||||||||||||         
T  16622764 agttgtcaatggtttgaggaacatgttgtattgtattcactctatttgttgtaatacacttttatcctagatcatgcaacttcataggtgttttgc---- 16622669  T
Q  266 ttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggagg-ttgagaatatgaagattgaagttcaatggttcttataaggtatttgaaga 364  Q
        ||||||||||| ||||||| | ||||   ||||||||  || ||| || || |||||||||||||||  || ||||||||| ||||| ||||||||    
T  16622668 ----agtgagaaatcatgtaaattgacaaatcaagacatcacatgaaggattaaggatatgaagattgaagaccagtggttcttagaaggt-tttgaaga 16622574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 166 - 268
Target Start/End: Original strand, 15205661 - 15205763
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    |||||||| ||||||||| ||| | ||||||| |||||| | | ||||||||| |||  |||| | ||| ||||| ||| | |||||||||||||||| |    
T  15205661 agttgtcagtggtttgaggaacatattgtattgttttcactcgagtcgttgtaattcagttttctcctagatcatgcaattccataggtgttttgagtgt 15205760  T
Q  266 ttt 268  Q
    |||    
T  15205761 ttt 15205763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 166 - 260
Target Start/End: Original strand, 24517372 - 24517466
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttg 260  Q
    |||||||||||||||||| ||| | ||||||| ||||||   | ||||||||| ||| | ||||| || ||||||  |||| |||||||||||||    
T  24517372 agttgtcaatggtttgaggaacatattgtattgttttcacccgagtcgttgtaattcacatttatccttaatcatgtaactccataggtgttttg 24517466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 289
Target Start/End: Original strand, 22754971 - 22755036
Alignment:
Q  225 ttttattctaaatcatacaacttcataggtgttttgagtctttt-tagtgagaaatcgtgtaaatc 289  Q
    |||||| ||| || || |||||||||||||||||||||| ||||  ||||||||||| ||||||||    
T  22754971 ttttatcctagattatgcaacttcataggtgttttgagtgttttgaagtgagaaatcatgtaaatc 22755036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 5e-36; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 189 - 376
Target Start/End: Original strand, 30543802 - 30543991
Alignment:
Q  189 ttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtctttttagtgagaaatcgtgtaaat 288  Q
    ||||||||| |||||||||| || |||||| ||| ||||||| ||||||||| ||| |  ||||||||||||||||||||| |||||||||| |||||||    
T  30543802 ttttgtattgttttcatttgagttgttgtaattcacttttatcctaaatcatgcaattatataggtgttttgagtctttttggtgagaaatcatgtaaat 30543901  T
Q  289 cggcaaaaagagacatcaagtggagg-ttgagaatatgaagattgaagttcaatggttc-ttataaggtatttgaagacaatacaaagtg 376  Q
    ||| ||||  ||| ||||  || ||| ||||| |||||||||||||||||||||||||| ||| ||| ||||| ||||||||| ||||||    
T  30543902 cggtaaaacaagatatcacatgaaggattgaggatatgaagattgaagttcaatggttctttaaaagatatttaaagacaatataaagtg 30543991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 247 - 386
Target Start/End: Complemental strand, 13583535 - 13583395
Alignment:
Q  247 tcataggtgttttgagtctttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggaggtt-gagaatatgaagattgaagttcaatggtt 345  Q
    |||||| || |||||||||||||||||||||||| ||||||||| |||||  |||||||||||| ||| | ||| |||||| ||||||||||||||||||    
T  13583535 tcatagttggtttgagtctttttagtgagaaatcatgtaaatcgacaaaacaagacatcaagtgaaggatcgaggatatgatgattgaagttcaatggtt 13583436  T
Q  346 cttataaggtatttgaagacaatacaaagtggaaaagaaaa 386  Q
    |||| ||| |||||||||||||||||||||| |||| ||||    
T  13583435 cttagaagatatttgaagacaatacaaagtgaaaaaaaaaa 13583395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 166 - 381
Target Start/End: Original strand, 29291789 - 29292004
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    |||| ||||||||||||| || ||||| |||| |||||||||| ||||||||| | |  |||||| ||||||||| |||||| ||| || ||||||||||    
T  29291789 agttatcaatggtttgaggaattttttatatt-ttttcatttgagtcgttgtaatgcagttttatcctaaatcatgcaactttataagtattttgagtct 29291887  T
Q  266 ttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggag-gttgagaatatgaagattgaagttcaatggttcttataaggtatttgaaga 364  Q
    ||||||| ||||||| |||||||||||||||  ||| |||| ||| ||  | ||| ||||||| ||||||| ||||||||||||| ||||| ||||||||    
T  29291888 ttttagtaagaaatcatgtaaatcggcaaaacaagatatcacgtgaagaatcgaggatatgaatattgaagatcaatggttcttagaaggtctttgaaga 29291987  T
Q  365 caatacaaagtggaaaa 381  Q
    ||| | |||||| ||||    
T  29291988 caacagaaagtgaaaaa 29292004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 163 - 368
Target Start/End: Complemental strand, 14424912 - 14424706
Alignment:
Q  163 agaagttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgag 262  Q
    |||||| |||||||||||||| |||||||| |||  |||||||| | ||||||||| |||  |||||| ||||||||| ||||| ||||||||||||  |    
T  14424912 agaagtagtcaatggtttgaggaactttttatatggttttcattcgagtcgttgtaattcagttttatcctaaatcatgcaactccataggtgttttagg 14424813  T
Q  263 tctttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggagg-ttgagaatatgaagattgaagttcaatggttcttataaggtatttga 361  Q
    | |||||||||||||||| |||||||||||||||  ||||| |||| | ||| |  |  ||| ||||||||||| ||||||||||||| ||||| |||||    
T  14424812 tttttttagtgagaaatcatgtaaatcggcaaaacaagacaacaagggaaggatatatgataagaagattgaagatcaatggttcttagaaggtttttga 14424713  T
Q  362 agacaat 368  Q
    | |||||    
T  14424712 acacaat 14424706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 168 - 372
Target Start/End: Complemental strand, 27097896 - 27097691
Alignment:
Q  168 ttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtc--t 265  Q
    |||||||||||||||| ||| | ||| ||| |||||||||| ||||||||| |||  ||||||  |||||||| |||||||||||||||||  ||||  |    
T  27097896 ttgtcaatggtttgaggaacatgttgcattgttttcatttgagtcgttgtaattcagttttatcataaatcatgcaacttcataggtgtttaaagtcttt 27097797  T
Q  266 ttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggagg-ttgagaatatgaagattgaagttcaatggttcttataaggtatttgaaga 364  Q
    ||||||||||||||| |||||||||||||||  |||||||| |||  || ||||  ||||||||||||||  | ||| ||||||| ||||| ||||||||    
T  27097796 ttttagtgagaaatcatgtaaatcggcaaaacaagacatcacgtgatggattgatcatatgaagattgaa--tgaatagttcttagaaggtctttgaaga 27097699  T
Q  365 caatacaa 372  Q
    ||||||||    
T  27097698 caatacaa 27097691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 166 - 369
Target Start/End: Original strand, 5153776 - 5153980
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    ||||||||||| ||| |||||   ||||||||||||||||| | ||| ||||| |||  ||||||  |||||||| |||||  |||||||||||||||||    
T  5153776 agttgtcaatgattttagaaaaaatttgtattattttcattcgagtcattgtaattcagttttatcttaaatcattcaactcgataggtgttttgagtct 5153875  T
Q  266 ttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggagg-ttgagaatatgaagattgaagttcaatggttcttataaggtatttgaaga 364  Q
    ||||||| ||||||| ||||||| |||||||  |||||| ||||| ||| | ||| ||||||||||||||| |||||| || ||  ||||| ||||||||    
T  5153876 ttttagtaagaaatcatgtaaataggcaaaacaagacataaagtgaaggatcgaggatatgaagattgaagatcaatgattattggaaggtttttgaaga 5153975  T
Q  365 caata 369  Q
    |||||    
T  5153976 caata 5153980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 166 - 372
Target Start/End: Complemental strand, 6888286 - 6888082
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    |||||||||||||| ||||||| ||||||||| |||||||||| ||| ||||| |||  || ||| ||||||||| ||||| ||  |||||||||||||     
T  6888286 agttgtcaatggttagagaaacattttgtatt-ttttcatttgagtcattgtaattcagttctatcctaaatcatgcaactcca--ggtgttttgagtca 6888190  T
Q  266 ttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggag-gttgagaatatgaagattgaagttcaatggttcttataaggtatttgaaga 364  Q
    ||||||||||||||| ||||||||  |||||  |  ||||| ||| ||  | ||| ||||||||||||||| ||||||||||||| || || ||||||||    
T  6888189 ttttagtgagaaatcatgtaaatcaacaaaacaaaccatcacgtgcagtatcgaggatatgaagattgaagatcaatggttcttaaaatgtctttgaaga 6888090  T
Q  365 caatacaa 372  Q
    ||||||||    
T  6888089 caatacaa 6888082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 166 - 376
Target Start/End: Original strand, 32239305 - 32239517
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    |||||||||||||||||| ||| | ||||||| |||| | ||| ||||||| | ||| |||||||  |||||||| ||||| ||||  |||||||||| |    
T  32239305 agttgtcaatggtttgagtaacatattgtattgtttttacttgagtcgttgcaattcacttttatcttaaatcatgcaactccataaatgttttgagtgt 32239404  T
Q  266 ttt-tagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggagg-ttgagaatatgaagattgaagttcaatggttcttataaggtatttgaag 363  Q
    ||| |||||||||||||||||||| | ||||  |||||||||  || ||| |  || ||||||||||||||||||||||||| |||||||||  || |||    
T  32239405 tttgtagtgagaaatcgtgtaaattgacaaatcgagacatcacatgaaggataaaggatatgaagattgaagttcaatggtttttataaggttcttaaag 32239504  T
Q  364 acaatacaaagtg 376  Q
    |||||| ||||||    
T  32239505 acaataaaaagtg 32239517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 166 - 373
Target Start/End: Complemental strand, 28292196 - 28291989
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    |||||||| ||||||||| ||| |||| | || |||||||||| || ||| || |||  |||||| |||| | || |||||||| | |||||||| || |    
T  28292196 agttgtcagtggtttgaggaacattttatgttcttttcatttgagttgttataattcagttttatcctaatttatgcaacttcacaagtgttttgtgttt 28292097  T
Q  266 ttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggagg-ttgagaatatgaagattgaagttcaatggttcttataaggtatttgaaga 364  Q
    |||||||||||| || ||||||||| |||||  ||||||||  || ||| ||||| ||||||||||||||| | ||||||||||| ||||| ||||||||    
T  28292096 ttttagtgagaa-tcatgtaaatcgccaaaataagacatcacatgaaggattgaggatatgaagattgaagattaatggttcttagaaggtctttgaaga 28291998  T
Q  365 caatacaaa 373  Q
    |||||||||    
T  28291997 caatacaaa 28291989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 171 - 372
Target Start/End: Complemental strand, 28260381 - 28260178
Alignment:
Q  171 tcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtcttttta 270  Q
    ||||||||| | | ||| |||||||||||||||||||  ||||||||| ||    ||||| |||||||||   ||| |||||||||||||||||||||||    
T  28260381 tcaatggttggtggaacattttgtattattttcattttagtcgttgtaatttaggtttatcctaaatcatgagactccataggtgttttgagtcttttta 28260282  T
Q  271 gtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggagg-ttgagaatat-gaagattgaagttcaatggttcttataaggtatttgaagacaat 368  Q
    |||||||||| |||||||| ||||||  |||||||| ||||||| |  || ||||  || ||||||| ||||| |||||||||| || |||||||| |||    
T  28260281 gtgagaaatcatgtaaatcagcaaaacaagacatcacgtggaggatcaagtatatcaaatattgaagatcaatagttcttataaagtttttgaagataat 28260182  T
Q  369 acaa 372  Q
    ||||    
T  28260181 acaa 28260178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 237 - 376
Target Start/End: Original strand, 11437508 - 11437649
Alignment:
Q  237 tcatacaacttcataggtgttttgagtctttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtgga--ggttgagaatatgaagattgaa 334  Q
    |||| ||||| |||| || ||||||||||||||||||||||||| |||||||||||||||  |||||||||||| |  | |  || ||||||| ||||||    
T  11437508 tcatgcaactccatatgtattttgagtctttttagtgagaaatcatgtaaatcggcaaaacaagacatcaagtgaaaggatcaaggatatgaaaattgaa 11437607  T
Q  335 gttcaatggttcttataaggtatttgaagacaatacaaagtg 376  Q
    ||||||||||||||| |||  |||||||||||||||| ||||    
T  11437608 gttcaatggttcttagaagacatttgaagacaatacagagtg 11437649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 166 - 296
Target Start/End: Original strand, 10867006 - 10867136
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    |||||||||||||||||| ||  ||||||||| |||||||||| ||||||||| |||  ||||||   ||||||| ||||| || ||||| ||||| |||    
T  10867006 agttgtcaatggtttgaggaatattttgtattgttttcatttgagtcgttgtaattcagttttatctcaaatcatgcaactccaaaggtgctttgaatct 10867105  T
Q  266 ttttagtgagaaatcgtgtaaatcggcaaaa 296  Q
    ||||||||||||||| ||||| |||||||||    
T  10867106 ttttagtgagaaatcatgtaagtcggcaaaa 10867136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 225 - 381
Target Start/End: Original strand, 31436556 - 31436704
Alignment:
Q  225 ttttattctaaatcatacaacttcataggtgttttgagtctttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggaggttgagaatat 324  Q
    |||||| ||||||||| ||||| |||||||||||||| |||||||||||||||||| ||||||||  |||||  |||||     || |  ||||| ||||    
T  31436556 ttttatcctaaatcatgcaactacataggtgttttgaatctttttagtgagaaatcatgtaaatcaacaaaacaagaca-----tgtacattgaggatat 31436650  T
Q  325 gaagattgaagttcaatggttcttataaggtatttgaagacaatacaaagtggaaaa 381  Q
    ||||||||| | ||||||||||||   ||||||||||||||||||||||||| ||||    
T  31436651 gaagattgacgatcaatggttctt---aggtatttgaagacaatacaaagtgaaaaa 31436704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 188 - 307
Target Start/End: Original strand, 28074554 - 28074672
Alignment:
Q  188 tttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtctttttagtgagaaatcgtgtaaa 287  Q
    |||||||||| |||||||| | ||||||| | ||| ||||||| ||||||||| ||||| ||||||||||| ||||||||||||||||||||| ||||||    
T  28074554 tttttgtattgttttcatt-gagtcgttgcaattcacttttatcctaaatcatgcaactccataggtgtttcgagtctttttagtgagaaatcatgtaaa 28074652  T
Q  288 tcggcaaaaagagacatcaa 307  Q
    |  ||||||  |||||||||    
T  28074653 tatgcaaaacaagacatcaa 28074672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 174 - 376
Target Start/End: Complemental strand, 30851188 - 30850985
Alignment:
Q  174 atggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtctttttagtg 273  Q
    |||||||||| || ||||| ||||||||||||| |  |||||||| |||   ||||| ||||||||| |||||  ||||||||||||  ||| | |||||    
T  30851188 atggtttgaggaagtttttatattattttcattcgaatcgttgtaattcagatttatcctaaatcatgcaactcaataggtgttttggatctatctagtg 30851089  T
Q  274 agaaatcgtgtaaatcggcaaaaagagacatcaagtggagg-ttgagaatatgaagattgaagttcaatggttcttataaggtatttgaagacaatacaa 372  Q
    ||||||||||||||||  ||||   ||||||| |||| ||| |  || ||||||||||||||| |||| |||||||| || || |||||| | |||||||    
T  30851088 agaaatcgtgtaaatcatcaaagcaagacatctagtgaaggatcaaggatatgaagattgaagatcaacggttcttagaatgtctttgaatataatacaa 30850989  T
Q  373 agtg 376  Q
    ||||    
T  30850988 agtg 30850985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 321 - 376
Target Start/End: Complemental strand, 28901289 - 28901235
Alignment:
Q  321 atatgaagattgaagttcaatggttcttataaggtatttgaagacaatacaaagtg 376  Q
    |||||||||||||| |||||||||||||||||||| | ||||||||||||||||||    
T  28901289 atatgaagattgaa-ttcaatggttcttataaggtttctgaagacaatacaaagtg 28901235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 372
Target Start/End: Complemental strand, 35135519 - 35135310
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    ||||||||| ||||| ||  || ||||||||| |||| | | | ||| ||||| |||  |||||| ||||||||| ||||| || | |||||||||||||    
T  35135519 agttgtcaaaggttttaggtacattttgtattgtttttactcgagtcattgtaattcatttttatcctaaatcatgcaactccacatgtgttttgagtct 35135420  T
Q  266 ttttagt--gagaaatcgtgtaaatcggcaaaaagagacatcaagtggagg-ttgagaatatgaagattgaagttcaatggttcttataaggtatttgaa 362  Q
    ||||  |  ||||||||  |||||||| |||||  |||||||| ||||||| |||||  |||| ||| ||||  ||||||||| |||  |||| ||||||    
T  35135419 ttttttttggagaaatcaggtaaatcgacaaaacaagacatcacgtggaggattgagggtatggagaatgaaaatcaatggttattaggaggtttttgaa 35135320  T
Q  363 gacaatacaa 372  Q
    |||| |||||    
T  35135319 gacagtacaa 35135310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 249 - 310
Target Start/End: Original strand, 12357574 - 12357635
Alignment:
Q  249 ataggtgttttgagtctttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtg 310  Q
    |||||||||||||||||||||||||||||||  |||||||| | ||||  ||||||||||||    
T  12357574 ataggtgttttgagtctttttagtgagaaattatgtaaatctgaaaaacaagacatcaagtg 12357635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 249 - 310
Target Start/End: Original strand, 12358702 - 12358763
Alignment:
Q  249 ataggtgttttgagtctttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtg 310  Q
    |||||||||||||||||||||||||||||||  |||||||| | ||||  ||||||||||||    
T  12358702 ataggtgttttgagtctttttagtgagaaattatgtaaatctgaaaaacaagacatcaagtg 12358763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 173 - 376
Target Start/End: Original strand, 28902114 - 28902318
Alignment:
Q  173 aatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtcttt-ttag 271  Q
    ||||||||||||||| | ||||||| |||||||| | ||||||||| ||| ||||||| ||| | ||  ||| | |||| ||||||| ||| |||  |||    
T  28902114 aatggtttgagaaacatattgtattgttttcattcgagtcgttgtaattcacttttatcctataccacgcaaatccataagtgtttttagtgtttagtag 28902213  T
Q  272 tgagaaatcgtgtaaatcggcaaaaagagacatcaagtggagg-ttgagaatatgaagattgaagttcaatggttcttataaggtatttgaagacaatac 370  Q
    ||||||||| ||||||||  ||||  ||||||||| ||| ||| |  |  |||| || ||| |||  |||||||||||| |||||  |||||||||||||    
T  28902214 tgagaaatcatgtaaatcaacaaatcgagacatcacgtgaaggatcaatgatattaa-attaaagaccaatggttcttagaaggttattgaagacaatac 28902312  T
Q  371 aaagtg 376  Q
    ||||||    
T  28902313 aaagtg 28902318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 166 - 268
Target Start/End: Complemental strand, 5570238 - 5570136
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    ||||||||||  |||||| ||| | ||||||| |||||| | | || |||||| ||| ||||||| ||| ||||| ||||||| |||||||||||||| |    
T  5570238 agttgtcaatactttgaggaacatattgtattgttttcactcgagttgttgtaattcacttttatcctatatcatgcaacttcgtaggtgttttgagtgt 5570139  T
Q  266 ttt 268  Q
    |||    
T  5570138 ttt 5570136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 233 - 373
Target Start/End: Complemental strand, 16052307 - 16052165
Alignment:
Q  233 taaatcatacaacttcataggtgttttgagtctttt-tagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggaggttga-gaatatgaagat 330  Q
    |||||||| |||||  ||||||||||||||| |||| |||||||||||| | ||||||  ||||   ||||||||  || ||| | | | ||||||||||    
T  16052307 taaatcatgcaactcaataggtgttttgagtgttttgtagtgagaaatcatctaaatcaacaaatcaagacatcacatgaaggataaaggatatgaagat 16052208  T
Q  331 tgaagttcaatggttcttataaggtatttgaagacaatacaaa 373  Q
    | |||  ||||| |||||| ||||| |||||||||||||||||    
T  16052207 taaagaccaatgattcttagaaggtttttgaagacaatacaaa 16052165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 166 - 289
Target Start/End: Original strand, 16054312 - 16054436
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    ||||||||||| ||| || ||| ||||||||| |||||| | | || |||||| |||  |||||| ||| |||||| |||| ||||| |||||||| | |    
T  16054312 agttgtcaatgatttaaggaacattttgtattgttttcactcgagttgttgtaattcatttttatcctagatcataaaactccatagatgttttgattgt 16054411  T
Q  266 ttt-tagtgagaaatcgtgtaaatc 289  Q
    ||| ||||||| |||| ||||||||    
T  16054412 tttgtagtgaggaatcatgtaaatc 16054436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 375
Target Start/End: Original strand, 24696643 - 24696810
Alignment:
Q  210 gtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtctttt-tagtgagaaatcgtgtaaatcggcaaaaagagacatcaag 308  Q
    ||||||||| ||  ||| ||| ||||||||||||| |||| ||||||||| ||| |||| |||| ||||||| ||||||||  ||||   ||||||||      
T  24696643 gtcgttgtaatttacttctatcctaaatcatacaatttcacaggtgtttttagtgttttatagtaagaaatcatgtaaatcaacaaatcaagacatcaca 24696742  T
Q  309 tggagg-ttgagaatatgaagattgaagttcaatggttcttataaggtatttgaagacaatacaaagt 375  Q
    |  ||| |  || |||||||||||||||  || | ||||||| ||||| |||||||| ||||||||||    
T  24696743 taaaggatcaaggatatgaagattgaagaccacttgttcttagaaggtttttgaagaaaatacaaagt 24696810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 171 - 296
Target Start/End: Complemental strand, 12774935 - 12774809
Alignment:
Q  171 tcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagt-cttttt 269  Q
    ||||||||||||   || |||| ||||||||| ||||| ||| ||||| ||   |||||| ||||||||| |||   |||||||||||| ||| ||||||    
T  12774935 tcaatggtttgacgtacattttatattatttttatttgagtcattgtaatttagttttatcctaaatcatgcaataccataggtgtttttagtacttttt 12774836  T
Q  270 agtgagaaatcgtgtaaatcggcaaaa 296  Q
    ||| ||||||  |||||||||| ||||    
T  12774835 agtaagaaataatgtaaatcggaaaaa 12774809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 286
Target Start/End: Complemental strand, 39438519 - 39438474
Alignment:
Q  241 acaacttcataggtgttttgagtctttttagtgagaaatcgtgtaa 286  Q
    ||||||||||||| ||||  ||||||||||||||||||| ||||||    
T  39438519 acaacttcataggcgtttctagtctttttagtgagaaatagtgtaa 39438474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 270
Target Start/End: Complemental strand, 41505611 - 41505530
Alignment:
Q  189 ttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtcttttta 270  Q
    |||||||||||||||||| | || |||||| ||| |||| || |  |||||| |||||||||||  || |||||||||||||    
T  41505611 ttttgtattattttcattcgagttgttgtaattcactttcatacctaatcatgcaacttcatagacgtgttgagtcttttta 41505530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 166 - 262
Target Start/End: Complemental strand, 13082034 - 13081938
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgag 262  Q
    ||||||||||| ||||||||||   ||||| | |||||| | | || |||||| |||  || ||| ||| ||||| |||||||||||||||||||||    
T  13082034 agttgtcaatgatttgagaaacacgttgtagtgttttcactcgagtagttgtaattcagttgtatcctagatcatgcaacttcataggtgttttgag 13081938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 226 - 274
Target Start/End: Original strand, 31232134 - 31232182
Alignment:
Q  226 tttattctaaatcatacaacttcataggtgttttgagtctttttagtga 274  Q
    ||||| ||||||||| ||||| ||||||||||||| || ||||||||||    
T  31232134 tttatcctaaatcatgcaactccataggtgttttgcgtttttttagtga 31232182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 2e-29; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 210 - 375
Target Start/End: Complemental strand, 26499899 - 26499733
Alignment:
Q  210 gtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtctttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagt 309  Q
    ||||||||| |||  |||||| |||||||||  || |||||||||||| ||||| |||||||||||||||| || ||||||||||||  ||| | || ||    
T  26499899 gtcgttgtaattcgattttatcctaaatcatgtaatttcataggtgttatgagtgtttttagtgagaaatcatgcaaatcggcaaaacaagataccacgt 26499800  T
Q  310 ggaggtt-gagaatatgaagattgaagttcaatggttcttataaggtatttgaagacaatacaaagt 375  Q
    | | | | ||| ||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||    
T  26499799 gaaagatcgaggatatgaagattgaagatcaatggttcttagaaggtttttgaagacaatacaaagt 26499733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 266 - 376
Target Start/End: Complemental strand, 33638501 - 33638390
Alignment:
Q  266 ttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggaggttga-gaatatgaagattgaagttcaatggttcttataaggtatttgaaga 364  Q
    ||||||||||||||| |||||||||||||||  | | |||||||| ||| | | | ||||||||||||||| ||||||||||||||||||| ||||||||    
T  33638501 ttttagtgagaaatcatgtaaatcggcaaaacaatatatcaagtgaaggatcaaggatatgaagattgaagatcaatggttcttataaggtctttgaaga 33638402  T
Q  365 caatacaaagtg 376  Q
     |||||||||||    
T  33638401 taatacaaagtg 33638390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 226 - 306
Target Start/End: Complemental strand, 9396642 - 9396563
Alignment:
Q  226 tttattctaaatcatacaacttcataggtgttttgagtctttttagtgagaaatcgtgtaaatcggcaaaaagagacatca 306  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||||||||| | |||||||||||||  ||||||||    
T  9396642 tttattctaaatcatgcaacttcatatgtgttttgagtctttttagtgagaaatcat-taaatcggcaaaacaagacatca 9396563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 166 - 372
Target Start/End: Complemental strand, 14924514 - 14924307
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    |||||||||||||||||| |||  ||| |||  | |||||| | |||||||||  || ||||||||||||||||| ||| |  ||||| |||||||||||    
T  14924514 agttgtcaatggtttgaggaacaatttatatcttattcattcgagtcgttgtacctcacttttattctaaatcatgcaattatataggggttttgagtct 14924415  T
Q  266 ttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggaggttgaga-atatgaagattgaagttcaatggttcttataaggtatttgaaga 364  Q
    ||| ||||||||||| |||||| | || |||  ||||||||| || ||    ||| ||||||| ||||||| |||||||||| |  || || ||||||||    
T  14924414 tttaagtgagaaatcatgtaaaccagctaaacaagacatcaaatgaagaaccagagatatgaaaattgaagatcaatggttcatggaatgtttttgaaga 14924315  T
Q  365 caatacaa 372  Q
    ||||||||    
T  14924314 caatacaa 14924307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 166 - 374
Target Start/End: Complemental strand, 14768365 - 14768163
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    |||||||| ||||||||| || ||||||||||  ||||||| | ||  ||||| ||| | ||||||||||| ||| ||| ||||||  ||||||||||||    
T  14768365 agttgtcattggtttgaggaattttttgtattggtttcattcgagttattgtaattcacatttattctaaaacatgcaatttcataaatgttttgagtct 14768266  T
Q  266 ttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggaggttgagaatatgaagattgaagttcaatggttcttataaggtatttgaagac 365  Q
    ||| ||  ||||||| |||||||||||||||  ||||||||  || | |      |||||| || |||| |||||| |||| || |||||||||||||||    
T  14768265 tttcagatagaaatcatgtaaatcggcaaaacaagacatcacatgaaag------atatgatgaatgaaattcaatcgttcatagaaggtatttgaagac 14768172  T
Q  366 aatacaaag 374  Q
    |||| ||||    
T  14768171 aatagaaag 14768163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 166 - 306
Target Start/End: Complemental strand, 32930569 - 32930429
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    |||||||||||||||| | ||| |||||| || ||| |||  | |||||| || ||| ||||||| || || ||| ||| || |||| ||||||||||||    
T  32930569 agttgtcaatggtttgcggaacattttgttttgtttccataagagtcgttttaattcacttttatccttaaacatgcaatttgatagatgttttgagtct 32930470  T
Q  266 ttttagtgagaaatcgtgtaaatcggcaaaaagagacatca 306  Q
    ||||||||||||||| ||||||| |||||||  ||||||||    
T  32930469 ttttagtgagaaatcatgtaaattggcaaaacaagacatca 32930429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 224 - 372
Target Start/End: Original strand, 16439534 - 16439683
Alignment:
Q  224 cttttattctaaatcatacaacttcataggtgttttgagtctttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggaggttga-gaat 322  Q
    ||||||| |||||| || |||||||| | |||||||||||||||||||||||||||| |||||||| | ||||  ||||||||  || | | | | | ||    
T  16439534 cttttatcctaaataatgcaacttcacatgtgttttgagtctttttagtgagaaatcatgtaaatcagaaaaacaagacatcagatgaaagatcagggat 16439633  T
Q  323 atgaagattgaagttcaatggttcttataaggtatttgaagacaatacaa 372  Q
    ||||||| ||||| ||||||||||||| || |  |||||||| |||||||    
T  16439634 atgaagaatgaagatcaatggttcttagaatggttttgaagaaaatacaa 16439683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 213 - 368
Target Start/End: Complemental strand, 9943199 - 9943043
Alignment:
Q  213 gttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtctttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtgga 312  Q
    |||||| ||| ||||||| ||||||||| ||||| |||||||||||| ||| |||||| ||||||||| |||||||||| ||||  |||||| || |  |    
T  9943199 gttgtaattcacttttatcctaaatcatgcaactccataggtgtttttagtatttttattgagaaatcatgtaaatcggaaaaacaagacattaaatcaa 9943100  T
Q  313 gg-ttgagaatatgaagattgaagttcaatggttcttataaggtatttgaagacaat 368  Q
    ||    || ||||||||| ||||  ||||||| ||||||||||| ||| ||||||||    
T  9943099 ggaccaaggatatgaagaatgaaaatcaatggctcttataaggtttttaaagacaat 9943043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 232 - 359
Target Start/End: Complemental strand, 12972415 - 12972287
Alignment:
Q  232 ctaaatcatacaacttcataggtgttttgagtctttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtg-gaggttgagaatatgaagat 330  Q
    ||||||||| |||||||||| ||||||||||||||||||| |||||||| |||||||| | |||   |||||| | |||  || | ||  ||||||||||    
T  12972415 ctaaatcatgcaacttcatacgtgttttgagtctttttagggagaaatcatgtaaatcagaaaaccaagacataacgtgaaagatcgatgatatgaagat 12972316  T
Q  331 tgaagttcaatggttcttataaggtattt 359  Q
    ||||| ||||||||||||  |||||||||    
T  12972315 tgaagatcaatggttctttgaaggtattt 12972287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 163 - 376
Target Start/End: Complemental strand, 17860548 - 17860334
Alignment:
Q  163 agaagttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgag 262  Q
    |||| |||||||||||||||| ||| |||||||||||||||| | | ||| ||||  ||  |||||||  |||||||| ||||| |||| ||| ||||||    
T  17860548 agaatttgtcaatggtttgaggaacattttgtattattttcactcgagtcattgtcatttacttttatcttaaatcatgcaactccatacgtgctttgag 17860449  T
Q  263 tctttt-tagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggagg-ttgagaatatgaagattgaagttcaatggttcttataaggtatttg 360  Q
    | |||| |||||||||||| ||||| ||  ||||    ||||||| ||| ||| |  || ||| ||| |||||||  |||||||||||| ||||| ||||    
T  17860448 tgttttgtagtgagaaatcatgtaattcaacaaatcaggacatcacgtgaaggataaagtataagaa-attgaaggacaatggttcttagaaggtttttg 17860350  T
Q  361 aagacaatacaaagtg 376  Q
     |||||||||||||||    
T  17860349 tagacaatacaaagtg 17860334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 321 - 376
Target Start/End: Original strand, 33638260 - 33638315
Alignment:
Q  321 atatgaagattgaagttcaatggttcttataaggtatttgaagacaatacaaagtg 376  Q
    ||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||    
T  33638260 atatgaagattgaagatcaatggttcttataaggtctttgaagataatacaaagtg 33638315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 225 - 306
Target Start/End: Original strand, 24617588 - 24617669
Alignment:
Q  225 ttttattctaaatcatacaacttcataggtgttttgagtctttttagtgagaaatcgtgtaaatcggcaaaaagagacatca 306  Q
    |||||| |||||||||  ||||||||  |||||||||||||||||||||||||||  |||||||| ||||||  ||||||||    
T  24617588 ttttatcctaaatcatgtaacttcatgagtgttttgagtctttttagtgagaaattatgtaaatcagcaaaacaagacatca 24617669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 287
Target Start/End: Complemental strand, 26512874 - 26512753
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    |||||||||||||||| | ||| ||||||||| |||||||| |  |||||||| ||| ||||||  ||| ||||| ||||   |||| ||||||||||||    
T  26512874 agttgtcaatggtttgtgtaacattttgtattgttttcattcgattcgttgtaattcacttttaacctagatcatgcaacccgatagctgttttgagtct 26512775  T
Q  266 ttttagtgagaaatcgtgtaaa 287  Q
    |  |||||||||||| ||||||    
T  26512774 tcctagtgagaaatcatgtaaa 26512753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 287
Target Start/End: Complemental strand, 26517990 - 26517869
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    |||||||||||||||| | ||| ||||||||| |||||||| |  |||||||| ||| ||||||  ||| ||||| ||||   |||| ||||||||||||    
T  26517990 agttgtcaatggtttgtgtaacattttgtattgttttcattcgattcgttgtaattcacttttaacctagatcatgcaacccgatagctgttttgagtct 26517891  T
Q  266 ttttagtgagaaatcgtgtaaa 287  Q
    |  |||||||||||| ||||||    
T  26517890 tcctagtgagaaatcatgtaaa 26517869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 163 - 267
Target Start/End: Complemental strand, 20495893 - 20495790
Alignment:
Q  163 agaagttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgag 262  Q
    ||||||| ||||||||||||| ||| ||||| ||| |||| ||||| ||||||||| |||  ||||||  ||||| || |||||||||| ||||||||||    
T  20495893 agaagttatcaatggtttgaggaacattttg-attgtttttatttgagtcgttgtaattcaattttatcttaaattatgcaacttcataagtgttttgag 20495795  T
Q  263 tcttt 267  Q
    |||||    
T  20495794 tcttt 20495790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 231 - 376
Target Start/End: Complemental strand, 24507474 - 24507328
Alignment:
Q  231 tctaaatcatacaacttcataggtgttttgagtctttt-tagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggagg-ttgagaatatgaag 328  Q
    |||||||||| ||||| |||||||||||||||  |||| |||||||||||| ||||||||  ||||   |||||||| ||| ||| ||||  ||||||||    
T  24507474 tctaaatcatgcaactccataggtgttttgagagttttgtagtgagaaatcctgtaaatcaacaaatcaagacatcacgtgaaggattgacgatatgaag 24507375  T
Q  329 attgaagttcaatggttcttataaggtatttgaagacaatacaaagtg 376  Q
    |||||||  |||||||| ||| ||| | | |||||| |||||||||||    
T  24507374 attgaag-acaatggttgttagaagttttatgaagaaaatacaaagtg 24507328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 234 - 290
Target Start/End: Complemental strand, 22559241 - 22559186
Alignment:
Q  234 aaatcatacaacttcataggtgttttgagtctttttagtgagaaatcgtgtaaatcg 290  Q
    ||||||| ||||||||||||||||||| ||| ||||||||||||||| |||||||||    
T  22559241 aaatcatgcaacttcataggtgttttgggtc-ttttagtgagaaatcatgtaaatcg 22559186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 321 - 376
Target Start/End: Original strand, 30355491 - 30355546
Alignment:
Q  321 atatgaagattgaagttcaatggttcttataaggtatttgaagacaatacaaagtg 376  Q
    ||||||||||||||| ||||| ||||||| ||||| ||||||||||||| ||||||    
T  30355491 atatgaagattgaagatcaatcgttcttagaaggtttttgaagacaataaaaagtg 30355546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 166 - 288
Target Start/End: Complemental strand, 17198852 - 17198737
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgtttt-gagtc 264  Q
    |||||| ||||||||||| ||||||||||||| ||||||| || || |||||| |||  ||||||        || |||||  ||||||||||| |||||    
T  17198852 agttgttaatggtttgaggaactttttgtattgttttcatctgagttgttgtaattcagttttat--------atgcaactctataggtgtttttgagtc 17198761  T
Q  265 tttttagtgagaaatcgtgtaaat 288  Q
    |||||||||||||||| |||||||    
T  17198760 tttttagtgagaaatcttgtaaat 17198737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 163 - 260
Target Start/End: Original strand, 30355341 - 30355437
Alignment:
Q  163 agaagttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttg 260  Q
    |||||||||||||||||||| |||| | ||||||| |||||| |   |||||| || ||| |||||||  |||||||| |||||| ||||||||||||    
T  30355341 agaagttgtcaatggtttgataaacatattgtatt-ttttcactcaagtcgttttaattcacttttatcataaatcatgcaactttataggtgttttg 30355437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 269
Target Start/End: Complemental strand, 1755650 - 1755555
Alignment:
Q  174 atggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtcttttt 269  Q
    |||||||||| | | ||||||||| ||||||||||  |||||||| ||| ||| ||| |  ||||||  |||| |||| |||||||||||||||||    
T  1755650 atggtttgaggatcattttgtattgttttcatttgattcgttgtaattcacttgtatccctaatcatgtaactacatacgtgttttgagtcttttt 1755555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 215
Target Start/End: Complemental strand, 24507679 - 24507632
Alignment:
Q  168 ttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgtt 215  Q
    |||||||| ||||||| ||||||||||||| |||||||| ||||||||    
T  24507679 ttgtcaatagtttgaggaactttttgtattgttttcattcgtgtcgtt 24507632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 15998599 - 15998652
Alignment:
Q  236 atcatacaacttcataggtgttttgagtctttt-tagtgagaaatcgtgtaaat 288  Q
    ||||| |||||||||||||||||||||| |||| ||||||| |||| |||||||    
T  15998599 atcatgcaacttcataggtgttttgagtgttttgtagtgaggaatcatgtaaat 15998652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 286
Target Start/End: Complemental strand, 23946864 - 23946819
Alignment:
Q  241 acaacttcataggtgttttgagtctttttagtgagaaatcgtgtaa 286  Q
    ||||||||||| |||||||||||||||||| ||| ||||| |||||    
T  23946864 acaacttcataagtgttttgagtctttttattgataaatcatgtaa 23946819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 224 - 376
Target Start/End: Complemental strand, 26994 - 26840
Alignment:
Q  224 cttttattctaaatcatacaacttcataggtgttttgagtcttt-ttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtg-gaggttgagaa 321  Q
    ||||||| ||||||||||||||| |||||||||||||||| |||  |||||||||||| ||||||||| ||||   |||||||| |||  || |  || |    
T  26994 cttttatcctaaatcatacaactacataggtgttttgagtgtttagtagtgagaaatcatgtaaatcgacaaattaagacatcacgtgaaagatcaagga 26895  T
Q  322 tatgaagattgaagttcaatggttcttataaggtatttgaagacaatacaaagtg 376  Q
    |||||| ||||||||||||||||||||| || ||  |||||||||||||||||||    
T  26894 tatgaaaattgaagttcaatggttcttagaaagttcttgaagacaatacaaagtg 26840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 176 - 375
Target Start/End: Original strand, 21425 - 21626
Alignment:
Q  176 ggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtcttttt-agtga 274  Q
    |||||||| ||||| ||||||| |||||| | | ||||||||| ||| ||||||| ||||||||| ||||||||||  ||||||| || ||||  |||||    
T  21425 ggtttgaggaacttattgtattgttttcactcgagtcgttgtaattcacttttatcctaaatcatgcaacttcataattgttttgggtgttttgcagtga 21524  T
Q  275 gaaatcgtgtaaatcggcaaaaagagacatcaagtggaggttgaga-atatgaagattgaagttcaatggttcttataaggtatttgaagacaatacaaa 373  Q
    | |||| ||||||||| ||||   |||||| |  || ||| | |   ||||||||||||||| ||||||||||||| ||||| ||| |||||||||||||    
T  21525 ggaatcatgtaaatcgacaaaccaagacattacatgaaggatcaatgatatgaagattgaagatcaatggttcttagaaggtttttaaagacaatacaaa 21624  T
Q  374 gt 375  Q
    ||    
T  21625 gt 21626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 166 - 373
Target Start/End: Original strand, 58763 - 58976
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    |||||||||||||||||| ||||||||||||| |||||||| | ||| ||||| | |   ||||| || |||||| |||||   || || |||  |||||    
T  58763 agttgtcaatggtttgaggaactttttgtattgttttcattcgggtcattgtaatccaggtttatcctgaatcatgcaactctttatgtttttcaagtct 58862  T
Q  266 ttttagtgagaaatcgtgtaaatcggcaaaaaga-gacatcaagtggagg-ttgagaatatgaagattgaagttca----atggttcttataaggtattt 359  Q
    ||||||||||||||| ||||||| ||  |||| | |||||||  || ||| | ||||||||||||||||||||| |    |||||||||| ||  |||||    
T  58863 ttttagtgagaaatcatgtaaattgggtaaaacaggacatcacatgaaggatcgagaatatgaagattgaagtttaatatatggttcttaaaatatattt 58962  T
Q  360 gaagacaatacaaa 373  Q
    ||||||||| ||||    
T  58963 gaagacaatgcaaa 58976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 231 - 376
Target Start/End: Original strand, 12327 - 12473
Alignment:
Q  231 tctaaatcatacaacttcataggtgttttgagtctttt-tagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggagg-ttgagaatatgaag 328  Q
    |||||||||| ||||| |||||||||||||||| |||| |||||||||||| ||||||||| ||||   |||||||| ||| ||| ||||  ||||||||    
T  12327 tctaaatcatgcaactccataggtgttttgagtgttttgtagtgagaaatcatgtaaatcgacaaatcaagacatcacgtgaaggattgacgatatgaag 12426  T
Q  329 attgaagttcaatggttcttataaggtatttgaagacaatacaaagtg 376  Q
    || ||||  |||||||| ||| ||| | | |||||| |||||||||||    
T  12427 atcgaag-acaatggttgttagaagttttatgaagaaaatacaaagtg 12473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 215
Target Start/End: Original strand, 12122 - 12169
Alignment:
Q  168 ttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgtt 215  Q
    |||||||| ||||||| ||||||||||||| |||||||| ||||||||    
T  12122 ttgtcaatagtttgaggaactttttgtattgttttcattcgtgtcgtt 12169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 269 - 376
Target Start/End: Complemental strand, 228179 - 228072
Alignment:
Q  269 tagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggaggtt-gagaatatgaagattgaagttcaatggttcttataaggtatttgaagacaa 367  Q
    |||||||||||| ||||||||| ||||   |||||||| ||| ||| | |||  |||||| |||||||  |||||||||||| |||||||||||||||||    
T  228179 tagtgagaaatcatgtaaatcgacaaatcaagacatcacgtgaaggatcgagtgtatgaatattgaaga-caatggttcttagaaggtatttgaagacaa 228081  T
Q  368 tacaaagtg 376  Q
    |||||||||    
T  228080 tacaaagtg 228072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 231 - 376
Target Start/End: Original strand, 1891 - 2037
Alignment:
Q  231 tctaaatcatacaacttcataggtgttttgagtctttt-tagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggagg-ttgagaatatgaag 328  Q
    |||||||||| ||||| |||||||||||||||  |||| |||||||||||| ||||||||  ||||   |||||||| ||| ||| ||||  ||||||||    
T  1891 tctaaatcatgcaactccataggtgttttgagagttttgtagtgagaaatcctgtaaatcaacaaatcaagacatcacgtgaaggattgacgatatgaag 1990  T
Q  329 attgaagttcaatggttcttataaggtatttgaagacaatacaaagtg 376  Q
    |||||||  |||||||| ||| ||| | | |||||| |||||||||||    
T  1991 attgaag-acaatggttgttagaagttttatgaagaaaatacaaagtg 2037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 215
Target Start/End: Original strand, 1686 - 1733
Alignment:
Q  168 ttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgtt 215  Q
    |||||||| ||||||| ||||||||||||| |||||||| ||||||||    
T  1686 ttgtcaatagtttgaggaactttttgtattgttttcattcgtgtcgtt 1733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1026 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold1026
Description:

Target: scaffold1026; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 376
Target Start/End: Complemental strand, 1930 - 1715
Alignment:
Q  166 agttgtcaatggtttgagaaactttttgtattattttcatttgtgtcgttgtatttcccttttattctaaatcatacaacttcataggtgttttgagtct 265  Q
    ||||||||||| ||| || || |||||||||| ||||||||   ||| ||||| |    |||||| |||||| || ||||||  |||||  ||||| |||    
T  1930 agttgtcaatgatttaaggaaatttttgtattgttttcattctagtcattgtaatctagttttatcctaaattatgcaactttgtaggttatttgaatct 1831  T
Q  266 ttttagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggagg-ttgagaatatgaagattgaagttca----atggttcttataaggtatttg 360  Q
    ||||||||||||||| || |||| |||||||  ||| |||| ||| ||| | ||||||||||||||| ||||| |    |||||||||| ||   |||||    
T  1830 ttttagtgagaaatcatggaaattggcaaaacaagagatcatgtgaaggatagagaatatgaagatttaagtttaatatatggttcttagaatacatttg 1731  T
Q  361 aagacaatacaaagtg 376  Q
    | ||||||||||||||    
T  1730 atgacaatacaaagtg 1715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 269 - 376
Target Start/End: Complemental strand, 5762 - 5655
Alignment:
Q  269 tagtgagaaatcgtgtaaatcggcaaaaagagacatcaagtggaggtt-gagaatatgaagattgaagttcaatggttcttataaggtatttgaagacaa 367  Q
    |||||||||||| ||||||| | |||| | ||||||||  || ||| | ||| |||||||||||||| |||||||||||||| ||||| ||| |||| ||    
T  5762 tagtgagaaatcatgtaaattgacaaataaagacatcacatgaaggatcgaggatatgaagattgaa-ttcaatggttcttagaaggtctttaaagaaaa 5664  T
Q  368 tacaaagtg 376  Q
    |||||||||    
T  5663 tacaaagtg 5655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1149 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1149
Description:

Target: scaffold1149; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 375
Target Start/End: Original strand, 1978 - 2015
Alignment:
Q  338 caatggttcttataaggtatttgaagacaatacaaagt 375  Q
    |||||||||||||| ||| |||||||||||||||||||    
T  1978 caatggttcttatatggtttttgaagacaatacaaagt 2015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0185 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 376
Target Start/End: Original strand, 2684 - 2729
Alignment:
Q  331 tgaagttcaatggttcttataaggtatttgaagacaatacaaagtg 376  Q
    ||||| |||||||||||||||||  |||||||||||||||| ||||    
T  2684 tgaagatcaatggttcttataagacatttgaagacaatacagagtg 2729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 224 - 295
Target Start/End: Complemental strand, 13110 - 13038
Alignment:
Q  224 cttttattctaaatcatacaacttcataggtgttttgagtctttt-tagtgagaaatcgtgtaaatcggcaaa 295  Q
    ||||||| |||||| || ||||| || ||||||||||||| |||| ||||||| |||| ||||||||| ||||    
T  13110 cttttatcctaaattatgcaactccacaggtgttttgagtgttttgtagtgaggaatcatgtaaatcgacaaa 13038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University