View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4773-Insertion-4 (Length: 545)
Name: NF4773-Insertion-4
Description: NF4773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4773-Insertion-4 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 118 - 545
Target Start/End: Original strand, 45340390 - 45340817
Alignment:
| Q |
118 |
gtaatcacatgtatccgttttattggcgtcgaacactaacacacttttcatcagaaatattggtgctacaaacccatcttttcnnnnnnnnnnnnnnnnn |
217 |
Q |
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| T |
45340390 |
gtaatcacatgtatccgttttattggcgtcgaacactaacacacttttcatcagaaatattggtgctacaaacccatcttttcttatattattattatta |
45340489 |
T |
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| Q |
218 |
nnnnnggaaaaccttattaggggtgctaaaactatcatatatgagatttagcaacatttttcaaatgttactaaccnnnnnnntactacttaacatttaa |
317 |
Q |
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| T |
45340490 |
ttattggaaaaccttattaggggtgctaaaactatcatatatgagatttagcaacatttttcaaatgttactaaccaaaaaattactacttaacatttaa |
45340589 |
T |
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| Q |
318 |
taacatttgaaaatgttaggcaaaacctatgcttctaaatggttttagtaacacttgatagtattatcggtaatatttgaaaaaatgttacatgtttaat |
417 |
Q |
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| T |
45340590 |
taacatttgaaaatgttaggcaaaacctatgcttctaaatggttttagtaacacttgatagtattatcggtaatatttgaaaaaatgttacatgtttaat |
45340689 |
T |
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| Q |
418 |
ggctaattagcaatcaatctttagcaaacaattttagatacaattttagccaactttgctgacataaatgtactgaattgtgaataactagtgtagaaca |
517 |
Q |
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| T |
45340690 |
ggctaattagcaatcaatctttagcaaacaattttagatacaattttagccaactttgctgacataaatgtactgaattgtgaataactagtgtagaaca |
45340789 |
T |
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| Q |
518 |
ttaagtgttgatcaatcacttaaacatt |
545 |
Q |
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| T |
45340790 |
ttaagtgtagatcaatcacttaaacatt |
45340817 |
T |
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Back To:
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Target: chr2; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 45340279 - 45340356
Alignment:
| Q |
7 |
aaattgcatatacggtatcttatttacaaattattaatatagacatagacacaacattgatacaaacacgttgacaac |
84 |
Q |
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| T |
45340279 |
aaattgcatatacggtatcttatttacaaattattaatatagacatagacacaacattgacacaaacatgttgacaac |
45340356 |
T |
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