View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4773-Insertion-5 (Length: 424)
Name: NF4773-Insertion-5
Description: NF4773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4773-Insertion-5 |
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| [»] chr7 (5 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0464 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 398; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 7 - 424
Target Start/End: Original strand, 19780377 - 19780794
Alignment:
| Q |
7 |
atttgtgaacccaccctctgtgttacttatgggtgaacaaagctttggaatgagtaccaattgttttctaatagaataagttgagttaaccaacaaggtt |
106 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
19780377 |
atttgtgaacccaccctctgtgttacttatgggtgaacaaagctttggaatgagtaccaattgttttctaatagaataagttgagttaatcaacaaggtt |
19780476 |
T |
|
| Q |
107 |
tgaccttttgagtctagccaaagagactagactcccacaacatggagaaccaaggtttgaatctcagctgggaaatatgtccacattcaagtgtttgttg |
206 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19780477 |
tgaccttttgagtctagccaaagagactagactcccacaacacggagaaccaaggtttgaatctcagctgggaaatatgtccacattcaagtgtttgttg |
19780576 |
T |
|
| Q |
207 |
cacctcgaataggattacctccagtagtgggatcctgtagaaaacaaacaaaaaagtgttatcctgttacattttaagcatgaaaatgcttttgtaaata |
306 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
19780577 |
cacctcgaataggattacctccagtagagggatcctgtagaaaacaaacaaaaaagtgttatcctgttacattttaagcatgaatatgcttttgtaaata |
19780676 |
T |
|
| Q |
307 |
attgtatatgtatttgatattcttcttggtttggttttgtttatactagttcaagtttatccaaactaattttggaaacaatggttattacatttttgta |
406 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19780677 |
attgtatatgtatttgatattcttcttggtttagttttgtttatactagttcaagtttatccaaactaattttggaaacaatggttattacatttttgta |
19780776 |
T |
|
| Q |
407 |
cttgataatgatattgta |
424 |
Q |
| |
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|||||||||||||||||| |
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| T |
19780777 |
cttgataatgatattgta |
19780794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 311 - 417
Target Start/End: Original strand, 14738471 - 14738577
Alignment:
| Q |
311 |
tatatgtatttgatattcttcttggtttggttttgtttatactagttcaagtttatccaaactaattttggaaacaatggttattacatttttgtacttg |
410 |
Q |
| |
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||||| |||||||||||||| ||||||| ||||||||||||| | ||||||| |||| ||||| ||||||||||||| |||| |||||||||||||| |
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| T |
14738471 |
tatatatatttgatattctttttggtttagttttgtttataccaattcaagtatatcagaactaggtttggaaacaatgactatttcatttttgtacttg |
14738570 |
T |
|
| Q |
411 |
ataatga |
417 |
Q |
| |
|
|||||| |
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|
| T |
14738571 |
ttaatga |
14738577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 278 - 376
Target Start/End: Original strand, 19723481 - 19723579
Alignment:
| Q |
278 |
ttttaagcatgaaaatgcttttgtaaataattgtatatgtatttgatattcttcttggtttggttttgtttatactagttcaagtttatccaaactaat |
376 |
Q |
| |
|
|||||||||||||||| |||| ||||| ||| | |||||||||||||||||||||||| ||||||||||||| ||||||||| ||| ||||||||| |
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|
| T |
19723481 |
ttttaagcatgaaaatatctttgcaaatatgtgtgtgtgtatttgatattcttcttggtttagttttgtttataccagttcaagtatattcaaactaat |
19723579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 355 - 424
Target Start/End: Complemental strand, 19886570 - 19886501
Alignment:
| Q |
355 |
gttcaagtttatccaaactaattttggaaacaatggttattacatttttgtacttgataatgatattgta |
424 |
Q |
| |
|
|||| ||| ||||||||||||||||| | || ||| || || ||||||||||||||||||||||||||| |
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| T |
19886570 |
gttctagtatatccaaactaattttgaacacgatgatttttttatttttgtacttgataatgatattgta |
19886501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 14738409 - 14738446
Alignment:
| Q |
278 |
ttttaagcatgaaaatgcttttgtaaataattgtatat |
315 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||| |
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| T |
14738409 |
ttttaagcatgaaaatgcttttgcaaataattctatat |
14738446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 8 - 424
Target Start/End: Complemental strand, 32578085 - 32577669
Alignment:
| Q |
8 |
tttgtgaacccaccctctgtgttacttatgggtgaacaaagctttggaatgagtaccaattgttttctaatagaataagttgagttaaccaacaaggttt |
107 |
Q |
| |
|
||||| |||| |||| || || |||||||||| | ||||||||||||||||||||| | |||||||| || |||||||||||||||||||||| ||||| |
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| T |
32578085 |
tttgtaaacctaccccctttggtacttatgggccagcaaagctttggaatgagtaccgactgttttctgatcgaataagttgagttaaccaacatggttt |
32577986 |
T |
|
| Q |
108 |
gaccttttgagtctagccaaagagactagactcccacaacatggagaaccaaggtttgaatctcagctgggaaatatgtccacattcaagtgtttgttgc |
207 |
Q |
| |
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| | |||| ||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||| ||||| | |||||||||||||||||| || |
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| T |
32577985 |
ggctgtttggttctagccaaagaggctagactcccacaacatgtagaacctaggtttgaatctcagctaggaaaggtatccacattcaagtgtttgacgc |
32577886 |
T |
|
| Q |
208 |
acctcgaataggattacctccagtagtgggatcctgtagaaaacaaacaaaaaagtgttatcctgttacattttaagcatgaaaatgcttttgtaaataa |
307 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
32577885 |
acctcgaataggattacctccagtagagggatcctgtagaaaacaaacaaaaaagtgttatccaattacattttaagcatgaaaatgcttttgtaaataa |
32577786 |
T |
|
| Q |
308 |
ttgtatatgtatttgatattcttcttggtttggttttgtttatactagttcaagtttatccaaactaattttggaaacaatggttattacatttttgtac |
407 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
32577785 |
ttgtatatgtatttgatattcttcttggtttagttttgtttatactagttcaagtttatccaaactaactttggagacaatggttattacatttttgtac |
32577686 |
T |
|
| Q |
408 |
ttgataatgatattgta |
424 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
32577685 |
ttgataatgatattgta |
32577669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 162
Target Start/End: Complemental strand, 12733930 - 12733823
Alignment:
| Q |
55 |
aatgagtaccaattgttttctaatagaataagttgagttaaccaacaaggtttgaccttttgagtctagccaaagagactagactcccacaacatggaga |
154 |
Q |
| |
|
||||||||||| ||||| |||||||||||| |||||||||| |||||| |||| | ||| ||||||| || || | |||||||||||| |||||| |
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|
| T |
12733930 |
aatgagtaccatctgtttcctaatagaataaattgagttaacaaacaagatttggctgattgggtctagcagaaaaggcaagactcccacaatgtggaga |
12733831 |
T |
|
| Q |
155 |
accaaggt |
162 |
Q |
| |
|
| |||||| |
|
|
| T |
12733830 |
atcaaggt |
12733823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 36 - 175
Target Start/End: Original strand, 14750274 - 14750413
Alignment:
| Q |
36 |
tgggtgaacaaagctttggaatgagtaccaattgttttctaatagaataagttgagttaaccaacaaggtttgaccttttgagtctagccaaagagacta |
135 |
Q |
| |
|
|||| ||||| |||||||||||||||||||| | |||| || |||||||| |||||||||||||||||||||||| ||| || ||| ||||| ||| |
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|
| T |
14750274 |
tgggcgaacagagctttggaatgagtaccaactattttttagtagaataaattgagttaaccaacaaggtttgactatttcggtgtagtagaagaggcta |
14750373 |
T |
|
| Q |
136 |
gactcccacaacatggagaaccaaggtttgaatctcagct |
175 |
Q |
| |
|
|||||||| ||| ||||||||||| || ||||||| |||| |
|
|
| T |
14750374 |
gactcccataacgtggagaaccaatgtctgaatcttagct |
14750413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 8 - 238
Target Start/End: Complemental strand, 18920039 - 18919817
Alignment:
| Q |
8 |
tttgtgaacccaccctctgtgttacttatgggtgaacaaagctttggaatgagtaccaattgttttctaatagaataagttgagttaaccaacaaggttt |
107 |
Q |
| |
|
|||||| ||||||| || |||||||| | |||||||| || ||||||||| || ||| | |||||||||| ||| | ||||||||||||||||||||| |
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|
| T |
18920039 |
tttgtgtacccacctcctttgttacttgtcggtgaacagaggtttggaatgcatatcaactattttctaatataatgaattgagttaaccaacaaggttt |
18919940 |
T |
|
| Q |
108 |
gaccttttgagtctagccaaagagactagactcccacaacatggagaaccaaggtttgaatctcagctgggaaatatgtccacattcaagtgtttgttgc |
207 |
Q |
| |
|
| ||||||| ||||| |||||||| | |||| ||||||||||||||| ||||| |||||||||| | |||||||| ||||| || | |
|
|
| T |
18919939 |
gg--------gtctagcagaagaggctagactcacgcaacgtggagaaccaaggttcaaatcttagctgggaaaggtatccacattttagtgtctgacac |
18919848 |
T |
|
| Q |
208 |
acctcgaataggattacctccagtagtggga |
238 |
Q |
| |
|
||||| |||| ||||||||||||||| |||| |
|
|
| T |
18919847 |
acctcaaatatgattacctccagtagaggga |
18919817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 18912786 - 18912729
Alignment:
| Q |
50 |
tttggaatgagtaccaattgttttctaatagaataagttgagttaaccaacaaggttt |
107 |
Q |
| |
|
||||||||||||||||| | |||||| | ||||||| ||| ||||||||||||||||| |
|
|
| T |
18912786 |
tttggaatgagtaccaactattttcttacagaataaattgtgttaaccaacaaggttt |
18912729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 338
Target Start/End: Complemental strand, 18912571 - 18912516
Alignment:
| Q |
281 |
taagcatgaaaatgcttttgtaaataattgtatatgtatttgatattcttcttggttt |
338 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||| ||||||||||| ||||| |||| |
|
|
| T |
18912571 |
taagcatgaaaaagcttttgcaaataattgtata--tatttgatattattctttgttt |
18912516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0464 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0464
Description:
Target: scaffold0464; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 55 - 162
Target Start/End: Original strand, 8840 - 8947
Alignment:
| Q |
55 |
aatgagtaccaattgttttctaatagaataagttgagttaaccaacaaggtttgaccttttgagtctagccaaagagactagactcccacaacatggaga |
154 |
Q |
| |
|
||||||||||| ||||| |||||||||||| ||||||||||||||||| |||| | |||| ||||||| || || | |||||||||||| |||||| |
|
|
| T |
8840 |
aatgagtaccatctgtttcctaatagaataaattgagttaaccaacaagatttggctgtttgggtctagcagaaaaggcaagactcccacaatgtggaga |
8939 |
T |
|
| Q |
155 |
accaaggt |
162 |
Q |
| |
|
| |||||| |
|
|
| T |
8940 |
atcaaggt |
8947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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