View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4773-Insertion-6 (Length: 387)
Name: NF4773-Insertion-6
Description: NF4773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4773-Insertion-6 |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 5 - 231
Target Start/End: Original strand, 7212147 - 7212373
Alignment:
| Q |
5 |
acagttacaacgcatgagtggtagtattaaagaaatggttggttgtgctcaagactcaagttacaacctttattttttcttttctaataagaactcaagt |
104 |
Q |
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| T |
7212147 |
acagttacaacgcatgagtagtagtattaaagaaatggttggttgtgctcaagactcaagttacaaccttttttttttcttttctaataagaactcaagt |
7212246 |
T |
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| Q |
105 |
ttttacctctactttccttcaacatatttcatctatttcggcaagcaagaaataattgattgtgttgaaagtttatttcttttatttccattttctcatt |
204 |
Q |
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| T |
7212247 |
ttttacctctactttccttcaacatatttcatctatttcggcaagcaagaaatagttgattgtgcttaaagtttttttcttttatttccattttctcatt |
7212346 |
T |
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| Q |
205 |
atgaaatttcattttgattaccataaa |
231 |
Q |
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| T |
7212347 |
atgaaatttcattttgattaccataaa |
7212373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 343 - 387
Target Start/End: Original strand, 7212369 - 7212413
Alignment:
| Q |
343 |
ataaataatgcaacctttactacatattttcgaatgaagtttata |
387 |
Q |
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| T |
7212369 |
ataaataatgcaacctttactaaatatttttgaatgaggtttata |
7212413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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