View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4773-Insertion-7 (Length: 335)

Name: NF4773-Insertion-7
Description: NF4773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4773-Insertion-7
NF4773-Insertion-7
[»] chr5 (1 HSPs)
chr5 (8-335)||(4274195-4274519)


Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 8 - 335
Target Start/End: Original strand, 4274195 - 4274519
Alignment:
Q  8 cctgcagcactctttgttgctnnnnnnntttggacaagctacattgttattcatatgttctgagaaacagttaatgaataggataaaatgcagcatgtgt 107  Q
    |||||||||||||||||||||       ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  4274195 cctgcagcactctttgttgctaaaaaa-tttggacaagctacatt-ttattcatatattctgagaaacagttaatgaataggataaaatgcagcatgtgt 4274292  T
Q  108 ctcacgtttggaattaaaggattggaacacgccaggaaaaatttaaagattgtttagtttaagaaaaacaaattcggattcagacatttagg-nnnnnnn 206  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||   |||||||||            
T  4274293 ctcatgtttggaattaaaggattggaacacgcaaggaaaaatttaaagattgtttagtttaagaaaaacaaattcggatt--aacatttaggaaaaaaaa 4274390  T
Q  207 nttattggacttgttagaatattttgtcgttaacactatatgtatgacatgaactgagtcagtagataagaataaagggaataacataaatttttccatt 306  Q
     ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4274391 attattggacttattagaatattttgtcgtttacactatatgtatgacatgaactgagtcagtagataagaataaagggaataacataaatttttccatt 4274490  T
Q  307 tacaagactcaacctcatatcgtacttag 335  Q
    ||||||| |||||||||||||||||||||    
T  4274491 tacaagattcaacctcatatcgtacttag 4274519  T

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