View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4773-Insertion-8 (Length: 310)
Name: NF4773-Insertion-8
Description: NF4773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4773-Insertion-8 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 8 - 310
Target Start/End: Original strand, 26556330 - 26556632
Alignment:
| Q |
8 |
ctatgttcatcttccgtccaaggaacaccctttcgccgttcttgataagaacttgaagccttagttccctttttcacagctcctccttcaccagcacacg |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26556330 |
ctatgttcatcttccgtccaaggaacaccctttcgccgttcttgataagaactcgaagccttagttccctttttcacagctcctccttcaccagcacacg |
26556429 |
T |
|
| Q |
108 |
ttgttgagctctttgaaaaagaatcataatctggcagaggcacaaaaccagattcaatgtggttgatatcatcaaacaaaaccacatagcgacgtttaat |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
26556430 |
ttgttgagctctttgaaaaagaatcataatctggcagaggcacaaaaccagattcaatgtggttgatatcatcaaacaaaaccacatagtgacgtttaat |
26556529 |
T |
|
| Q |
208 |
ctcttctaaagttttcccgggcacatcagccgcaattttcacccatcgatccacagcgtcctccggataattcgccaatgtattttcaaatgctttgtct |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
26556530 |
ctcttctaaagttttcccgggcacatcagccgcaattttctcccatcgatccacagcgtcctcgggataattcgccaatgtattttcaaatgctttgtct |
26556629 |
T |
|
| Q |
308 |
tga |
310 |
Q |
| |
|
||| |
|
|
| T |
26556630 |
tga |
26556632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 119 - 297
Target Start/End: Complemental strand, 26776234 - 26776056
Alignment:
| Q |
119 |
tttgaaaaagaatcataatctggcagaggcacaaaaccagattcaatgtggttgatatcatcaaacaaaaccacatagcgacgtttaatctcttctaaag |
218 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||| | ||||||| ||||| || ||||||| | ||| |||| |
|
|
| T |
26776234 |
tttgaaaaagaatcataatctggtagaggcacaaaaccagattcaatgttgtgaatatcatctaccaaaacctcatagtgatgtttaatttgttccaaag |
26776135 |
T |
|
| Q |
219 |
ttttcccgggcacatcagccgcaattttcacccatcgatccacagcgtcctccggataattcgccaatgtattttcaaa |
297 |
Q |
| |
|
||||||| |||||| | |||||||| ||| |||||||||||||| | || || |||||||| ||||||| || |||||| |
|
|
| T |
26776134 |
ttttcccaggcacaccggccgcaatcttctcccatcgatccacaacatcgtcaggataattggccaatgcatattcaaa |
26776056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University