View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4773-Insertion-9 (Length: 135)
Name: NF4773-Insertion-9
Description: NF4773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4773-Insertion-9 |
 | |
|
| [»] chr1 (4 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 128; Significance: 1e-66; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 1e-66
Query Start/End: Original strand, 8 - 135
Target Start/End: Original strand, 33180489 - 33180616
Alignment:
| Q |
8 |
aaagcaacatggcaagtgattgatatcatcattgagttagaaaggctcaactcacgtcacgacatcaaggaagtgccagctcttgctccagctttggagc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33180489 |
aaagcaacatggcaagtgattgatatcatcattgagttagaaaggctcaactcacgtcacgacatcaaggaagtgccagctcttgctccagctttggagc |
33180588 |
T |
|
| Q |
108 |
aattcccagttgatgtatattgggttat |
135 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
33180589 |
aattcccagttgatgtatattgggttat |
33180616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 3e-43
Query Start/End: Original strand, 11 - 135
Target Start/End: Original strand, 33157677 - 33157801
Alignment:
| Q |
11 |
gcaacatggcaagtgattgatatcatcattgagttagaaaggctcaactcacgtcacgacatcaaggaagtgccagctcttgctccagctttggagcaat |
110 |
Q |
| |
|
||||||| |||| |||||||||||||||||| ||| ||||| |||||||| ||||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33157677 |
gcaacatcgcaactgattgatatcatcattgcgttggaaagactcaactcgcgtcatgatatcaaggaagtgccagctcttgctccagctttggagcaat |
33157776 |
T |
|
| Q |
111 |
tcccagttgatgtatattgggttat |
135 |
Q |
| |
|
||||||||||||| ||||||||||| |
|
|
| T |
33157777 |
tcccagttgatgtctattgggttat |
33157801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 11 - 135
Target Start/End: Original strand, 33139252 - 33139376
Alignment:
| Q |
11 |
gcaacatggcaagtgattgatatcatcattgagttagaaaggctcaactcacgtcacgacatcaaggaagtgccagctcttgctccagctttggagcaat |
110 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| ||||| |||||||| ||||| |||||||||||||| ||||| ||||| ||||||||||| |||| |
|
|
| T |
33139252 |
gcaacatggcaagtcattgaaatcatcattgagttggaaagactcaactcgcgtcatgacatcaaggaagttccagcccttgcaccagctttggaacaat |
33139351 |
T |
|
| Q |
111 |
tcccagttgatgtatattgggttat |
135 |
Q |
| |
|
|||| |||||||||||||||||||| |
|
|
| T |
33139352 |
tccctgttgatgtatattgggttat |
33139376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 65; E-Value: 6e-29
Query Start/End: Original strand, 11 - 135
Target Start/End: Complemental strand, 33289606 - 33289482
Alignment:
| Q |
11 |
gcaacatggcaagtgattgatatcatcattgagttagaaaggctcaactcacgtcacgacatcaaggaagtgccagctcttgctccagctttggagcaat |
110 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||| ||||| |||||||||| ||| ||||||||| |||||||||||||||| | ||| ||||| ||| |
|
|
| T |
33289606 |
gcaacatggaaagtgattgaaatcatcattgagttggaaagactcaactcacttcatgacatcaagaaagtgccagctcttgcactagcattggaagaat |
33289507 |
T |
|
| Q |
111 |
tcccagttgatgtatattgggttat |
135 |
Q |
| |
|
|||| |||||||| | ||||||||| |
|
|
| T |
33289506 |
tcccggttgatgtgttttgggttat |
33289482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University