View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4773_high_4 (Length: 481)

Name: NF4773_high_4
Description: NF4773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4773_high_4
NF4773_high_4
[»] scaffold0026 (1 HSPs)
scaffold0026 (15-471)||(12437-12872)
[»] chr2 (18 HSPs)
chr2 (18-471)||(26582856-26583313)
chr2 (15-162)||(5706610-5706758)
chr2 (12-245)||(23062983-23063216)
chr2 (12-208)||(23878286-23878481)
chr2 (152-471)||(23168973-23169294)
chr2 (152-471)||(23580230-23580551)
chr2 (74-188)||(23089608-23089722)
chr2 (74-178)||(21907744-21907848)
chr2 (74-188)||(23102036-23102150)
chr2 (65-204)||(29281336-29281475)
chr2 (34-142)||(9978-10086)
chr2 (89-245)||(24660876-24661032)
chr2 (34-145)||(25181446-25181557)
chr2 (50-247)||(26884503-26884701)
chr2 (132-235)||(23264421-23264524)
chr2 (12-68)||(23264557-23264613)
chr2 (96-186)||(27208318-27208408)
chr2 (96-186)||(27210653-27210743)
[»] scaffold0634 (2 HSPs)
scaffold0634 (81-471)||(2747-3136)
scaffold0634 (50-86)||(3181-3217)
[»] chr6 (26 HSPs)
chr6 (18-471)||(29614738-29615195)
chr6 (15-210)||(12167637-12167832)
chr6 (15-210)||(19286546-19286741)
chr6 (17-210)||(19877730-19877923)
chr6 (15-210)||(19883506-19883701)
chr6 (15-162)||(34640575-34640723)
chr6 (15-162)||(34647249-34647397)
chr6 (15-210)||(19786455-19786650)
chr6 (15-175)||(25470290-25470451)
chr6 (17-145)||(21365067-21365195)
chr6 (17-145)||(23969049-23969177)
chr6 (74-240)||(18799754-18799920)
chr6 (74-386)||(25396343-25396654)
chr6 (74-208)||(21565765-21565899)
chr6 (354-470)||(19786751-19786866)
chr6 (45-235)||(19471891-19472080)
chr6 (34-145)||(20008493-20008604)
chr6 (354-470)||(12167420-12167535)
chr6 (354-470)||(19877513-19877628)
chr6 (354-470)||(19883289-19883404)
chr6 (354-470)||(19286329-19286444)
chr6 (132-208)||(9186827-9186903)
chr6 (69-247)||(19300317-19300495)
chr6 (132-229)||(24513456-24513553)
chr6 (15-68)||(24513370-24513423)
chr6 (81-125)||(24513425-24513469)
[»] chr3 (18 HSPs)
chr3 (12-467)||(18914193-18914646)
chr3 (18-470)||(41455687-41456142)
chr3 (18-164)||(24192272-24192418)
chr3 (74-208)||(16802041-16802175)
chr3 (76-249)||(13324376-13324549)
chr3 (74-178)||(55499700-55499804)
chr3 (132-249)||(13302844-13302961)
chr3 (51-204)||(14865184-14865338)
chr3 (345-402)||(18136117-18136174)
chr3 (12-128)||(17241085-17241201)
chr3 (132-249)||(13313520-13313637)
chr3 (16-85)||(10390034-10390104)
chr3 (16-85)||(10415123-10415193)
chr3 (16-85)||(10421793-10421863)
chr3 (124-208)||(17243260-17243343)
chr3 (349-402)||(18129607-18129660)
chr3 (411-467)||(18136249-18136306)
chr3 (412-467)||(18129736-18129792)
[»] scaffold0025 (1 HSPs)
scaffold0025 (18-164)||(14977-15123)
[»] chr7 (26 HSPs)
chr7 (18-249)||(13742945-13743174)
chr7 (15-210)||(13006706-13006901)
chr7 (18-211)||(13123506-13123698)
chr7 (15-161)||(12591230-12591377)
chr7 (12-235)||(13678772-13678995)
chr7 (12-208)||(16676660-16676845)
chr7 (12-208)||(17650896-17651081)
chr7 (18-211)||(12710435-12710627)
chr7 (17-145)||(3857953-3858082)
chr7 (74-178)||(11389922-11390026)
chr7 (34-178)||(20311597-20311740)
chr7 (354-471)||(12710780-12710896)
chr7 (354-471)||(13123851-13123967)
chr7 (40-229)||(46625275-46625464)
chr7 (34-145)||(2464763-2464874)
chr7 (80-178)||(11383440-11383538)
chr7 (354-471)||(13742686-13742803)
chr7 (34-204)||(16090425-16090595)
chr7 (34-206)||(29181654-29181826)
chr7 (354-470)||(13006489-13006604)
chr7 (50-173)||(14320192-14320316)
chr7 (74-178)||(21231571-21231674)
chr7 (303-397)||(18607248-18607342)
chr7 (344-397)||(16475930-16475983)
chr7 (358-402)||(13318007-13318051)
chr7 (38-85)||(13678982-13679030)
[»] chr5 (19 HSPs)
chr5 (15-210)||(23527904-23528099)
chr5 (38-178)||(18408491-18408631)
chr5 (17-145)||(28889925-28890053)
chr5 (17-145)||(28896629-28896757)
chr5 (17-145)||(28909877-28910005)
chr5 (17-145)||(28931569-28931697)
chr5 (17-145)||(28946272-28946400)
chr5 (34-145)||(19236299-19236410)
chr5 (345-402)||(22232436-22232493)
chr5 (34-143)||(22467181-22467290)
chr5 (34-145)||(22460555-22460666)
chr5 (354-470)||(23527632-23527747)
chr5 (17-145)||(28933070-28933200)
chr5 (15-85)||(20819618-20819689)
chr5 (15-85)||(20826718-20826789)
chr5 (50-186)||(34829441-34829578)
chr5 (74-122)||(22439322-22439370)
chr5 (132-178)||(22439360-22439406)
chr5 (411-467)||(22232568-22232625)
[»] chr1 (13 HSPs)
chr1 (17-210)||(41111214-41111407)
chr1 (75-176)||(18712117-18712218)
chr1 (34-145)||(20858305-20858416)
chr1 (34-145)||(21705674-21705785)
chr1 (34-145)||(21710217-21710328)
chr1 (34-145)||(20851678-20851789)
chr1 (345-402)||(20941657-20941714)
chr1 (354-470)||(41110997-41111112)
chr1 (40-245)||(22030298-22030504)
chr1 (132-245)||(11157441-11157554)
chr1 (49-186)||(19961547-19961684)
chr1 (412-467)||(23631145-23631200)
chr1 (411-467)||(20941789-20941846)
[»] scaffold1773 (2 HSPs)
scaffold1773 (18-211)||(452-644)
scaffold1773 (354-471)||(153-269)
[»] chr4 (15 HSPs)
chr4 (15-211)||(8046420-8046616)
chr4 (15-162)||(53483023-53483171)
chr4 (34-186)||(11847462-11847614)
chr4 (12-178)||(15407454-15407608)
chr4 (34-204)||(16147376-16147546)
chr4 (74-165)||(14486049-14486140)
chr4 (354-471)||(8046777-8046893)
chr4 (40-186)||(13887144-13887289)
chr4 (40-186)||(13888001-13888146)
chr4 (345-402)||(14555881-14555938)
chr4 (40-172)||(15244587-15244719)
chr4 (44-167)||(15307497-15307620)
chr4 (45-245)||(8834185-8834385)
chr4 (196-249)||(14485988-14486041)
chr4 (302-394)||(18212523-18212615)
[»] scaffold0247 (1 HSPs)
scaffold0247 (15-188)||(10667-10829)
[»] chr8 (12 HSPs)
chr8 (18-211)||(23865885-23866078)
chr8 (15-125)||(17053949-17054060)
chr8 (354-471)||(19902808-19902924)
chr8 (12-178)||(14057148-14057302)
chr8 (12-178)||(25111354-25111508)
chr8 (354-471)||(23865615-23865732)
chr8 (34-145)||(24321216-24321327)
chr8 (74-235)||(18613531-18613691)
chr8 (345-400)||(19987990-19988045)
chr8 (346-396)||(20005423-20005473)
chr8 (418-467)||(20005563-20005612)
chr8 (379-470)||(17053780-17053870)
[»] scaffold0317 (2 HSPs)
scaffold0317 (12-235)||(665-888)
scaffold0317 (38-85)||(875-923)
[»] scaffold0456 (2 HSPs)
scaffold0456 (15-297)||(243-504)
scaffold0456 (15-297)||(7388-7649)
[»] scaffold0222 (1 HSPs)
scaffold0222 (12-229)||(16086-16303)
[»] scaffold0117 (2 HSPs)
scaffold0117 (18-210)||(9167-9358)
scaffold0117 (354-471)||(9512-9628)
[»] scaffold0154 (1 HSPs)
scaffold0154 (74-249)||(30195-30370)
[»] scaffold0029 (3 HSPs)
scaffold0029 (18-471)||(110939-111378)
scaffold0029 (34-145)||(91747-91858)
scaffold0029 (34-145)||(97473-97584)
[»] scaffold0461 (2 HSPs)
scaffold0461 (12-208)||(581-766)
scaffold0461 (111-208)||(7605-7702)
[»] scaffold0476 (1 HSPs)
scaffold0476 (51-208)||(3854-4011)
[»] scaffold0249 (2 HSPs)
scaffold0249 (292-402)||(7557-7667)
scaffold0249 (411-467)||(7742-7798)
[»] scaffold0232 (1 HSPs)
scaffold0232 (40-245)||(18961-19166)
[»] scaffold0138 (1 HSPs)
scaffold0138 (40-245)||(1117-1322)
[»] scaffold0053 (2 HSPs)
scaffold0053 (39-358)||(81764-82082)
scaffold0053 (34-204)||(80036-80206)
[»] scaffold0124 (1 HSPs)
scaffold0124 (12-177)||(34861-35015)
[»] scaffold0310 (1 HSPs)
scaffold0310 (77-178)||(6876-6976)
[»] scaffold0924 (1 HSPs)
scaffold0924 (18-117)||(1343-1442)
[»] scaffold0077 (3 HSPs)
scaffold0077 (74-208)||(4195-4329)
scaffold0077 (350-402)||(17972-18024)
scaffold0077 (350-402)||(23605-23657)
[»] scaffold0028 (3 HSPs)
scaffold0028 (74-235)||(65414-65575)
scaffold0028 (40-167)||(1445-1572)
scaffold0028 (293-385)||(65265-65357)
[»] scaffold0090 (1 HSPs)
scaffold0090 (50-214)||(17497-17661)
[»] scaffold0235 (2 HSPs)
scaffold0235 (25-178)||(23192-23334)
scaffold0235 (25-208)||(15475-15647)
[»] scaffold0004 (2 HSPs)
scaffold0004 (12-227)||(116183-116388)
scaffold0004 (74-208)||(129221-129355)
[»] scaffold0094 (1 HSPs)
scaffold0094 (40-235)||(51554-51749)
[»] scaffold0085 (1 HSPs)
scaffold0085 (34-162)||(4217-4345)
[»] scaffold0031 (2 HSPs)
scaffold0031 (40-245)||(121200-121406)
scaffold0031 (40-245)||(132077-132283)
[»] scaffold0139 (1 HSPs)
scaffold0139 (11-235)||(15521-15733)
[»] scaffold0020 (1 HSPs)
scaffold0020 (74-227)||(102503-102656)
[»] scaffold0001 (3 HSPs)
scaffold0001 (354-471)||(174440-174557)
scaffold0001 (50-247)||(493588-493786)
scaffold0001 (102-164)||(525142-525204)
[»] scaffold0348 (2 HSPs)
scaffold0348 (345-402)||(1527-1584)
scaffold0348 (411-467)||(1659-1716)
[»] scaffold0023 (1 HSPs)
scaffold0023 (34-127)||(134867-134960)
[»] scaffold1061 (1 HSPs)
scaffold1061 (128-229)||(1716-1817)
[»] scaffold0107 (1 HSPs)
scaffold0107 (81-178)||(41171-41267)
[»] scaffold0483 (1 HSPs)
scaffold0483 (49-180)||(11569-11700)
[»] scaffold0006 (1 HSPs)
scaffold0006 (18-68)||(49595-49645)
[»] scaffold0337 (1 HSPs)
scaffold0337 (302-397)||(9958-10053)
[»] scaffold0261 (2 HSPs)
scaffold0261 (111-186)||(24192-24267)
scaffold0261 (50-86)||(24070-24106)
[»] scaffold0106 (2 HSPs)
scaffold0106 (405-467)||(46685-46748)
scaffold0106 (405-467)||(50958-51021)


Alignment Details
Target: scaffold0026 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 15 - 471
Target Start/End: Original strand, 12437 - 12872
Alignment:
Q  15 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtc 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||    
T  12437 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtc 12536  T
Q  115 gctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaacttt-gctttgtgcattgaggggaccttttgagcattctaaa 213  Q
    ||                    ||||||||||||  |||||||||||| ||||||||||||| |||| |||||  |||||||| | ||||||||||||||    
T  12537 gc--------------------ttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcac-gaggggacttcttgagcattctaaa 12615  T
Q  214 atatctctttcaacttatataatccttgtataggtagcagaaccctacta-aacgctctgatgatcgaatttggttgatgttagtaaattttggagatga 312  Q
    |||| || || ||||| ||||  ||||||||||||| ||||| ||||||| |||   | | |||||||||| ||||||||||||| ||||||||||||||    
T  12616 atatttcctttaacttgtatatcccttgtataggtatcagaatcctactagaacaagccggtgatcgaatt-ggttgatgttagtgaattttggagatga 12714  T
Q  313 ctgagtatgaaatcaagtgattatatattac-attgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttc 411  Q
     |||||| |||||||||||| | ||||  || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||    
T  12715 ttgagtaagaaatcaagtgaatgtata--actattgaatgaaattgatgtatgcgcataattataattaattgtgtatgttctggattgttagaactctc 12812  T
Q  412 ggagtagtaagtcatatgaaatatatgtgtagttaagttgtatgtagatatacacaggtt 471  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  12813 ggagtagtaagtcatatgagatatatgtgtagttgagttgtatgtagatatacacaggtt 12872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 179; Significance: 2e-96; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 18 - 471
Target Start/End: Complemental strand, 26583313 - 26582856
Alignment:
Q  18 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| || ||||||||||||||||||    
T  26583313 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgacccgtaagcgagctgaacccagacctactgtaagccggtcgct 26583214  T
Q  118 caagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaac-tttgctttgtgcattgaggggaccttttgagcattctaaaata 216  Q
     |||||||||||||||||||||||||||||    |||||||||||   |||||||| |||| || |||||  |||||||| | |||||||||||| ||||    
T  26583213 taagcgaactagccgtcgcttaagcgaagtaagtcttagtcagccttcttctgaacttttgtttcgtgca-ggaggggacttcttgagcattctataata 26583115  T
Q  217 tctctttcaacttatataatccttgtataggtagcagaaccctacta-aacgctctgatgatcgaatttggttgatgttagtaaattttggagatgactg 315  Q
    | ||||| ||||  ||||| ||| || |||||| | ||  |||| || |||   | | |||||||| ||| ||| ||||||||||| |||||||||| ||    
T  26583114 tttcttttaactagtataaccctggtgtaggtaaccgactcctattagaactagccggtgatcgaa-ttgattggtgttagtaaatgttggagatgattg 26583016  T
Q  316 agtatgaaatcaagtgattatat--attaca--ttgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttc 411  Q
    ||||||||||| ||||| |||||  || |||  | |||||  ||||||||||| |||||||||||| |||||||||||||||||||||||| | | || |    
T  26583015 agtatgaaatcgagtgaatatatacataacatgtggaatgtgattgatgtatgcgcataattataaataattgtgtatgttctggattgtttg-agttgc 26582917  T
Q  412 ggagtagtaagtcatatgaaatatatgt-gtagttaagttgtatgtagatatacacaggtt 471  Q
    ||||||||||||||||| ||| ||||||  |||||||||||||||||||||||||||||||    
T  26582916 ggagtagtaagtcatataaaacatatgtaatagttaagttgtatgtagatatacacaggtt 26582856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 15 - 162
Target Start/End: Original strand, 5706610 - 5706758
Alignment:
Q  15 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaaccca-aacttactgtaagccggt 113  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| | |||||||||| |||| |||| | | |||||||||| |||    
T  5706610 cctgtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgagcccagagcctactgtaagctggt 5706709  T
Q  114 cgctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagcc 162  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||||    
T  5706710 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttagtcagcc 5706758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 12 - 245
Target Start/End: Complemental strand, 23063216 - 23062983
Alignment:
Q  12 gaacctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccg 111  Q
    ||||| || ||||||||| |||||  ||||||||||||||||||| ||||||||||  ||| |  ||| ||||||   ||||| ||||  ||||||||||    
T  23063216 gaacccgtaagcgaaaaatcatttgcattctgtcagaagttcgcttaagcgaaccgcaagcgaggcgttagcgagtgaaaccccaactctctgtaagccg 23063117  T
Q  112 gtcgctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaactttgctttgtgcattgagggga-ccttttgagcattct 210  Q
    |||||| |||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||| | ||||||| |||||| |||||||||||||      
T  23063116 gtcgcttaagcgaaccagccgtcgcttaagcgaagttgaccttagtcagccactttttgaactttgcctcgtgcatt-aggggatccttttgagcattta 23063018  T
Q  211 aaaatatctctttcaacttatataatccttgtata 245  Q
    ||||| | ||||||||||| ||||| |||| ||||    
T  23063017 aaaatgtttctttcaacttgtataacccttatata 23062983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 12 - 208
Target Start/End: Complemental strand, 23878481 - 23878286
Alignment:
Q  12 gaacctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccg 111  Q
    ||||||||||||||  |||| ||||||||||| ||  | ||||||||||||||| |  ||| |||||||||||||| ||||||| |||||||||||||||    
T  23878481 gaacctgtgagcgaggaacctttttgattctgccaagaattcgctcaagcgaactgcaagcgaaccgtaagcgagcagaacccagacttactgtaagccg 23878382  T
Q  112 gtcgctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaactttgctttgtgcattgagggga-ccttttgagcatt 208  Q
    |||||| ||||||||||||||||||||||||||||  ||||||||||||||||||| ||||| |||| | ||||| | |||||| |||||||||||||    
T  23878381 gtcgcttaagcgaactagccgtcgcttaagcgaagatgaccttagtcagccacttt-tgaaccttgcctcgtgcact-aggggatccttttgagcatt 23878286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 152 - 471
Target Start/End: Original strand, 23168973 - 23169294
Alignment:
Q  152 cttagtcagccactttctgaactttgctttgtgcattgagggga-ccttttgagcattctaaaatatctctttcaacttatataatccttgtataggtag 250  Q
    ||||||||||| |||||||||  ||| || ||| | | |||||| ||||||| | |||||||||| | ||||||||||| ||||| |||||||||||||     
T  23168973 cttagtcagcctctttctgaaaattgtttcgtgtact-aggggacccttttgggtattctaaaatgtttctttcaacttgtataacccttgtataggtat 23169071  T
Q  251 cagaaccctacta-aacgctctgatgatcgaatttggttgatgttagtaaattttggagatgactgagtatgaaatcaagtgattatatattaca--ttg 347  Q
     || | ||||||| ||| ||||| |||||| | ||||||||||||| | |||||||||||||  |||||||||||||| |||| | ||||| |||  | |    
T  23169072 taggatcctactagaacactctggtgatcgca-ttggttgatgttaatgaattttggagatgtttgagtatgaaatcatgtgaatgtatataacatgtgg 23169170  T
Q  348 aatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagtta 446  Q
    ||||  | ||||||||| |||||||||||| | ||||||||||| |||||||||| | | || ||||||||||||| |||||||||||||||  ||||      
T  23169171 aatgtgaatgatgtatgcgcataattataaatgattgtgtatgtgctggattgtttg-agttgcggagtagtaagttatatgaaatatatgtattagtgg 23169269  T
Q  447 agttgtatgtagatatacacaggtt 471  Q
    |||||||||| ||||||||| ||||    
T  23169270 agttgtatgtggatatacacgggtt 23169294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 152 - 471
Target Start/End: Original strand, 23580230 - 23580551
Alignment:
Q  152 cttagtcagccactttctgaactttgctttgtgcattgagggga-ccttttgagcattctaaaatatctctttcaacttatataatccttgtataggtag 250  Q
    ||||||||||| |||||||||  ||| || ||| | | |||||| ||||||| | |||||||||| | ||||||||||| ||||| |||||||||||||     
T  23580230 cttagtcagcctctttctgaaaattgtttcgtgtact-aggggacccttttgggtattctaaaatgtttctttcaacttgtataacccttgtataggtat 23580328  T
Q  251 cagaaccctacta-aacgctctgatgatcgaatttggttgatgttagtaaattttggagatgactgagtatgaaatcaagtgattatatattaca--ttg 347  Q
     || | ||||||| ||| ||||| |||||| | ||||||||||||| | |||||||||||||  |||||||||||||| |||| | ||||| |||  | |    
T  23580329 taggatcctactagaacactctggtgatcgca-ttggttgatgttaatgaattttggagatgtttgagtatgaaatcatgtgaatgtatataacatgtgg 23580427  T
Q  348 aatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagtta 446  Q
    ||||  | ||||||||| |||||||||||| | ||||||||||| |||||||||| | | || ||||||||||||| |||||||||||||||  ||||      
T  23580428 aatgtgaatgatgtatgcgcataattataaatgattgtgtatgtgctggattgtttg-agttgcggagtagtaagttatatgaaatatatgtattagtgg 23580526  T
Q  447 agttgtatgtagatatacacaggtt 471  Q
    |||||||||| ||||||||| ||||    
T  23580527 agttgtatgtggatatacacgggtt 23580551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 74 - 188
Target Start/End: Original strand, 23089608 - 23089722
Alignment:
Q  74 aaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaac 173  Q
    |||||||||||||| ||||||| ||||||||||||||||||||| ||||||||| | ||||||||||||||||| ||||||||||||||||||| |||||    
T  23089608 aaccgtaagcgagcagaacccagacttactgtaagccggtcgcttaagcgaactggacgtcgcttaagcgaagttgaccttagtcagccactttttgaac 23089707  T
Q  174 tttgctttgtgcatt 188  Q
     |||| | |||||||    
T  23089708 gttgcctcgtgcatt 23089722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 74 - 178
Target Start/End: Complemental strand, 21907848 - 21907744
Alignment:
Q  74 aaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaac 173  Q
    |||||| ||||||| |||||| ||||| |||||||||||||||| ||||||||||||| ||||||||||||||  ||||||||||||||||||| |||||    
T  21907848 aaccgttagcgagcggaaccccaactttctgtaagccggtcgcttaagcgaactagccatcgcttaagcgaagatgaccttagtcagccactttttgaac 21907749  T
Q  174 tttgc 178  Q
    |||||    
T  21907748 tttgc 21907744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 74 - 188
Target Start/End: Original strand, 23102036 - 23102150
Alignment:
Q  74 aaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaac 173  Q
    |||||||||||||| ||||||| ||||||||||||||| || || ||||||||| | ||||||||||||||||| ||||||||||||||||||| |||||    
T  23102036 aaccgtaagcgagcagaacccagacttactgtaagccgatcacttaagcgaactggacgtcgcttaagcgaagttgaccttagtcagccactttttgaac 23102135  T
Q  174 tttgctttgtgcatt 188  Q
     |||| | |||||||    
T  23102136 gttgcctcgtgcatt 23102150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 65 - 204
Target Start/End: Complemental strand, 29281475 - 29281336
Alignment:
Q  65 ccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagccac 164  Q
    |||||||| | |||||||||| ||||||||| || |||||||||| ||||||| ||||||||||||||||||||||||||| ||    ||||||||||      
T  29281475 ccgtgagcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagtcagcctt 29281376  T
Q  165 tttctgaactttgctttgtgcattgaggggaccttttgag 204  Q
    ||||||||| |||||| ||||| | ||||  |||||||||    
T  29281375 tttctgaaccttgcttcgtgcactaagggatccttttgag 29281336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 34 - 142
Target Start/End: Complemental strand, 10086 - 9978
Alignment:
Q  34 tttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgt 133  Q
    |||||||||| ||  | |||||| |||||| |||||||| | |||||||||| ||||||||| || |||||||||| ||||||| |||||||||||||||    
T  10086 tttgattctgccaagaattcgcttaagcgagccgtgagcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgt 9987  T
Q  134 cgcttaagc 142  Q
    |||||||||    
T  9986 cgcttaagc 9978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 89 - 245
Target Start/End: Complemental strand, 24661032 - 24660876
Alignment:
Q  89 gaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaactttgctttgtgcatt 188  Q
    |||||| ||||| |||| ||||||||||| |||||| | ||||||||||||||| |||  |  |||||||||||||||| |||| ||| ||| ||||| |    
T  24661032 gaaccccaactttctgtgagccggtcgcttaagcgagccagccgtcgcttaagcaaagaaggtcttagtcagccactttttgaattttacttcgtgcact 24660933  T
Q  189 gagggga-ccttttgagcattctaaaatatctctttcaacttatataatccttgtata 245  Q
     |||||| ||||||||||||| |||||| | ||||||||||| ||||| | |||||||    
T  24660932 -aggggatccttttgagcattttaaaatgtttctttcaacttgtataacctttgtata 24660876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 34 - 145
Target Start/End: Original strand, 25181446 - 25181557
Alignment:
Q  34 tttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgt 133  Q
    |||||||||| ||  | |||||| |||||| |||||||| | ||||||| || ||||||||| || |||||||||| ||||||| |||| ||||||||||    
T  25181446 tttgattctgccaagaattcgcttaagcgagccgtgagcgacccgtaagtgaactgaacccagacctactgtaagctggtcgcttaagcaaactagccgt 25181545  T
Q  134 cgcttaagcgaa 145  Q
    ||||||||||||    
T  25181546 cgcttaagcgaa 25181557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 50 - 247
Target Start/End: Complemental strand, 26884701 - 26884503
Alignment:
Q  50 gttcgctcaagcgaaccgtgagcaaaccgtaagcgagct-gaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcgaagtg 148  Q
    |||||||||||||||| |||||| |||||| |||||||  |||||  ||| |  |||  || ||||||| |||||| ||| || ||||||||||||| ||    
T  26884701 gttcgctcaagcgaactgtgagctaaccgtgagcgagcgagaacctcaaccttttgtgtgctggtcgcttaagcgagctacccttcgcttaagcgaactg 26884602  T
Q  149 gaccttagtcagccactttctgaactttgctttgtgcattgagggga-ccttttgagcattctaaaatatctctttcaacttatataatccttgtatagg 247  Q
      |||||||||||| |||||||||| |||||| ||||| | |||||| ||||||||| ||| | |||| | ||||| | ||| |||||  ||||||||||    
T  26884601 agccttagtcagcctctttctgaaccttgcttcgtgcact-aggggacccttttgagtatttttaaatgtttcttttagcttgtataactcttgtatagg 26884503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 132 - 235
Target Start/End: Complemental strand, 23264524 - 23264421
Alignment:
Q  132 gtcgcttaagcgaagtggaccttagtcagccactttctgaactttgctttgtgcattgagggga-ccttttgagcattctaaaatatctctttcaactta 230  Q
    |||||||||||||||  ||||||||||||||||||| |||||||||| | ||||| | |||||| ||||||||||||| | |||| |  ||||||||||     
T  23264524 gtcgcttaagcgaagatgaccttagtcagccactttttgaactttgcctcgtgcact-aggggatccttttgagcatttttaaatgttcctttcaacttg 23264426  T
Q  231 tataa 235  Q
    |||||    
T  23264425 tataa 23264421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 23264613 - 23264557
Alignment:
Q  12 gaacctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgt 68  Q
    ||||| || ||||||||| |||||| ||| |||||||||||||||||||||||||||    
T  23264613 gaacccgtaagcgaaaaatcattttcattatgtcagaagttcgctcaagcgaaccgt 23264557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 186
Target Start/End: Original strand, 27208318 - 27208408
Alignment:
Q  96 aacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaactttgctttgtgca 186  Q
    ||||| |||| ||| ||||||| |||||| ||| || ||||||||||||| ||  ||||||||||||  ||||||||| ||| || |||||    
T  27208318 aactttctgtgagctggtcgcttaagcgagctacccttcgcttaagcgaactgagccttagtcagcctttttctgaaccttgtttcgtgca 27208408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 186
Target Start/End: Original strand, 27210653 - 27210743
Alignment:
Q  96 aacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaactttgctttgtgca 186  Q
    ||||| |||| ||| ||||||| |||||| ||| || ||||||||||||| ||  ||||||||||||  ||||||||| ||| || |||||    
T  27210653 aactttctgtgagctggtcgcttaagcgagctacccttcgcttaagcgaactgagccttagtcagcctttttctgaaccttgtttcgtgca 27210743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0634 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 81 - 471
Target Start/End: Complemental strand, 3136 - 2747
Alignment:
Q  81 agcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaacttt-gct 179  Q
    |||||||  |||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||| ||||||||||||| |||    
T  3136 agcgagcgaaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagtgagccttagtcagcctctttctgaacttttgct 3037  T
Q  180 ttgtgcattgaggggaccttttgagcattctaaaatatctctttcaacttatataatccttgtataggtagcagaaccctacta-aacgctctgatgatc 278  Q
    | |||||  |||||||| | |||||||||||||||||| || || ||||| ||||| ||||||||||||| ||||| || |||| |||   | | |||||    
T  3036 tcgtgcac-gaggggacttcttgagcattctaaaatatttcctttaacttgtataacccttgtataggtaccagaatcccactagaacaagccggtgatc 2938  T
Q  279 gaatttggttgatgttagtaaattttggagatgactgagtatgaaatcaagtgattatatattacattgaatgaaattgatgtatgtgcataattataat 378  Q
    ||||| ||||||||||||| ||| |||||||||| ||||| |||||||| |||| |||||| |  |||||||||| |||||||||| ||||||||||||     
T  2937 gaatt-ggttgatgttagtgaatattggagatgattgagtttgaaatcatgtgaatatataatt-attgaatgaatttgatgtatgcgcataattataaa 2840  T
Q  379 taattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgtatgtagatatacacaggtt 471  Q
    ||||||| |||||||||||||||| | | || |||||||||||||||||||||| ||||||  ||||| |||||||||||||||||||||||||    
T  2839 taattgtctatgttctggattgtttg-agttgcggagtagtaagtcatatgaaacatatgtattagttgagttgtatgtagatatacacaggtt 2747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0634; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 3217 - 3181
Alignment:
Q  50 gttcgctcaagcgaaccgtgagcaaaccgtaagcgag 86  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  3217 gttcgcttaagcgaaccgtgagcgaaccgtaagcgag 3181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 166; Significance: 1e-88; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 18 - 471
Target Start/End: Original strand, 29614738 - 29615195
Alignment:
Q  18 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||| ||||||||    
T  29614738 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaacccgtaagcgagctgaacccagacctactgtaagtcggtcgct 29614837  T
Q  118 caagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaac-tttgctttgtgcattgaggggaccttttgagcattctaaaata 216  Q
     ||||||||||||||||||||||||||||||  ||||||||||||   |||||||| |||| || ||||| |||||| || | |||||||||||| ||||    
T  29614838 taagcgaactagccgtcgcttaagcgaagtgagccttagtcagcc---ttctgaacttttgtttcgtgca-tgagggaacttcttgagcattctataata 29614933  T
Q  217 tctctttcaacttatataatccttgtataggtagcagaaccctacta-aacgctctgatgatcgaatttggttgatgttagtaaattttggagatgactg 315  Q
    | || || ||||  ||||| ||| | ||||||| ||||| | || || ||||  | | |||| ||| ||| ||| ||||||||||| |||||||||| ||    
T  29614934 tttcctttaactagtataaccctggcataggtaacagaatcttattagaacgagccggtgattgaa-ttgattggtgttagtaaatgttggagatgattg 29615032  T
Q  316 agtatgaaatcaagtga------ttatatattaca--ttgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgttagaat 407  Q
    ||||||||| |||||||       ||||||| |||  | |||||  ||||||||||||| |||||||||| ||||||||||||||||||||||||   |     
T  29615033 agtatgaaaacaagtgaatatgtgtatatataacatgtggaatgtgattgatgtatgtgaataattataaataattgtgtatgttctggattgtt--gag 29615130  T
Q  408 tttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgtatgtagatatacacaggtt 471  Q
    || ||||| |||||||||||||||| ||||||  ||||  |||||||||||||||||||||||||    
T  29615131 ttgcggagcagtaagtcatatgaaacatatgtaatagtcgagttgtatgtagatatacacaggtt 29615195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 15 - 210
Target Start/End: Complemental strand, 12167832 - 12167637
Alignment:
Q  15 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaaccca-aacttactgtaagccggt 113  Q
    |||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||| | |||||||||| ||||||||| ||| |||||||||| |||    
T  12167832 cctgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggt 12167733  T
Q  114 cgctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaact-ttgctttgtgcattgaggggaccttttgagcattct 210  Q
    |||| |||||||||||||||||||||||||||||| |||||| ||||||  |||||||||| |||||| ||||| ||||||||| | |||||| ||||    
T  12167732 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcc-ttttctgaactgttgcttagtgca-tgaggggacttcttgagcgttct 12167637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 15 - 210
Target Start/End: Complemental strand, 19286741 - 19286546
Alignment:
Q  15 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaaccca-aacttactgtaagccggt 113  Q
    |||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||| | |||||||||| ||||||||| ||| |||||||||| |||    
T  19286741 cctgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggt 19286642  T
Q  114 cgctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaact-ttgctttgtgcattgaggggaccttttgagcattct 210  Q
    |||| |||||||||||||||||||||||||||||| |||||| ||||||  |||||||||| |||||| ||||| ||||||||| | |||||| ||||    
T  19286641 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcc-ttttctgaactgttgcttagtgca-tgaggggacttcttgagcgttct 19286546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 17 - 210
Target Start/End: Complemental strand, 19877923 - 19877730
Alignment:
Q  17 tgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaaccca-aacttactgtaagccggtcg 115  Q
    |||||||||||||||||||| ||||||||  ||||||||||||||||||||||||| | |||||||||| ||||||||| ||| |||||||||| |||||    
T  19877923 tgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggtcg 19877824  T
Q  116 ctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaact-ttgctttgtgcattgaggggaccttttgagcattct 210  Q
    || |||||||||||||||||||||||||||||| |||||| ||||||  |||||||||| |||||| ||||| ||||||||| | |||||| ||||    
T  19877823 cttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcc-ttttctgaactgttgcttagtgca-tgaggggacttcttgagcgttct 19877730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 15 - 210
Target Start/End: Complemental strand, 19883701 - 19883506
Alignment:
Q  15 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaaccca-aacttactgtaagccggt 113  Q
    |||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||| | |||||||||| ||||||||| ||| |||||||||| |||    
T  19883701 cctgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggt 19883602  T
Q  114 cgctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaact-ttgctttgtgcattgaggggaccttttgagcattct 210  Q
    |||| |||||||||||||||||||||||||||||| |||||| | ||||  |||||||||| |||||| ||||| ||||||||| | |||||| ||||    
T  19883601 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaattagcc-ttttctgaactgttgcttagtgca-tgaggggacttcttgagcgttct 19883506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 15 - 162
Target Start/End: Original strand, 34640575 - 34640723
Alignment:
Q  15 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaaccca-aacttactgtaagccggt 113  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| | |||||||||| |||| |||| | | |||||||||| |||    
T  34640575 cctgtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgagcccagagcctactgtaagctggt 34640674  T
Q  114 cgctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagcc 162  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||||    
T  34640675 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttagtcagcc 34640723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 15 - 162
Target Start/End: Original strand, 34647249 - 34647397
Alignment:
Q  15 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaaccca-aacttactgtaagccggt 113  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| | |||||||||| |||| |||| | | |||||||||| |||    
T  34647249 cctgtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgagcccagagcctactgtaagctggt 34647348  T
Q  114 cgctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagcc 162  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||||    
T  34647349 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttagtcagcc 34647397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 15 - 210
Target Start/End: Original strand, 19786455 - 19786650
Alignment:
Q  15 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaaccca-aacttactgtaagccggt 113  Q
    |||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||| | ||||||||||  |||||||| ||| |||||||||| |||    
T  19786455 cctgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaagtgaacccagaacctactgtaagctggt 19786554  T
Q  114 cgctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaact-ttgctttgtgcattgaggggaccttttgagcattct 210  Q
    |||| |||||||||||||||||||||||||||||| |||||| ||||||  |||||||||| ||||||  |||| ||||||||| | |||||| ||||    
T  19786555 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcc-ttttctgaactgttgcttaatgca-tgaggggacttcttgagcgttct 19786650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 15 - 175
Target Start/End: Original strand, 25470290 - 25470451
Alignment:
Q  15 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaaccca-aacttactgtaagccggt 113  Q
    |||||||||||||||||||||||||||||||  || |||||||||||||||||||||| | |||||||||| |||| |||| ||| |||||||||  |||    
T  25470290 cctgtgagcgaaaaaccattttgattctgtccaaaattcgctcaagcgaaccgtgagcgacccgtaagcgaactgagcccagaacctactgtaagttggt 25470389  T
Q  114 cgctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaactt 175  Q
    |||| ||||||||||| |||||||||||||||||| |||||||||||||  |||||||||||    
T  25470390 cgcttaagcgaactagacgtcgcttaagcgaagtgaaccttagtcagcctttttctgaactt 25470451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 21365067 - 21365195
Alignment:
Q  17 tgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgc 116  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||| | |||||||||| ||||||||| || |||||||||  ||||||    
T  21365067 tgtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgc 21365166  T
Q  117 tcaagcgaactagccgtcgcttaagcgaa 145  Q
    | |||||| ||||||||||||||||||||    
T  21365167 ttaagcgagctagccgtcgcttaagcgaa 21365195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 23969049 - 23969177
Alignment:
Q  17 tgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgc 116  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||| | |||||||||| ||||||||| || |||||||||  ||||||    
T  23969049 tgtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgc 23969148  T
Q  117 tcaagcgaactagccgtcgcttaagcgaa 145  Q
    | |||||| ||||||||||||||||||||    
T  23969149 ttaagcgagctagccgtcgcttaagcgaa 23969177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 74 - 240
Target Start/End: Complemental strand, 18799920 - 18799754
Alignment:
Q  74 aaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaac 173  Q
    |||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||| |||||    
T  18799920 aaccgtaagcgagcggaacccagacttactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagtcaaccttagtcagccactttttgaac 18799821  T
Q  174 tttgctttgtgcattgagggga-ccttttgagcattctaaaatatctctttcaacttatataatcctt 240  Q
    ||||| |  |||||| |||||| |||||| ||||||| || || |  |||||||||| ||||| ||||    
T  18799820 tttgcctcatgcatt-aggggaccctttttagcattcaaacatgttcctttcaacttgtataaccctt 18799754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 74 - 386
Target Start/End: Complemental strand, 25396654 - 25396343
Alignment:
Q  74 aaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaac 173  Q
    |||||| ||||||| |||||| ||||  ||||||| |||||||| |||||| | |||||||||||||||||||| |  |||||||| ||||||| ||||     
T  25396654 aaccgttagcgagcggaaccccaactctctgtaagtcggtcgcttaagcgagccagccgtcgcttaagcgaagtaggtcttagtcaaccactttttgaat 25396555  T
Q  174 tttgctttgtgcattgagggga-ccttttgagcattctaaaatatctctttcaacttatataatccttgtataggtagcagaaccctact-aaacgctct 271  Q
    | ||||| ||||| | |||| | |||||||||||||||||||| | ||||||||||| ||||| ||||||||| | | | ||| |||||| |||| |  |    
T  25396554 tatgcttagtgcact-agggaatccttttgagcattctaaaatgtttctttcaacttgtataacccttgtatatgca-ctgaatcctactgaaacacatt 25396457  T
Q  272 gatgatcgaatttggttgatgttagtaaattttggagatgactgagtatgaaatcaagtgattatatattacattgaatgaaattgatgtatgtgcataa 371  Q
    | | |||||| ||||||||  ||||| ||||||||| |||| ||||||||||| ||||||| |||||| ||  ||||||||| |||||| ||  | || |    
T  25396456 ggtaatcgaa-ttggttgaatttagtgaattttggatatgattgagtatgaaaccaagtgaatatatactaggttgaatgaacttgatgcattagtatga 25396358  T
Q  372 ttataattaattgtg 386  Q
    |||| ||||||||||    
T  25396357 ttattattaattgtg 25396343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 74 - 208
Target Start/End: Original strand, 21565765 - 21565899
Alignment:
Q  74 aaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaac 173  Q
    |||||||||||||| ||||||| ||||||||||||||||||||| ||||||||| | ||||||||||||||||| ||||||||||||||||||| |||||    
T  21565765 aaccgtaagcgagcagaacccagacttactgtaagccggtcgcttaagcgaactggacgtcgcttaagcgaagttgaccttagtcagccactttttgaac 21565864  T
Q  174 tttgctttgtgcattgagggga-ccttttgagcatt 208  Q
     |||| | ||||||| ||| || |||||||||||||    
T  21565865 gttgcctcgtgcatt-aggagacccttttgagcatt 21565899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 354 - 470
Target Start/End: Original strand, 19786751 - 19786866
Alignment:
Q  354 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 452  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||||| || || | ||||||||||||||||||| | |||||| |||||  ||||||    
T  19786751 attgatgtatgtgcataattataaataattgtgtaag-tctggattgtttgagttat-ggagtagtaagtcatatgatacatatgtagtagtcgagttgt 19786848  T
Q  453 atgtagatatacacaggt 470  Q
    ||||||||||||||||||    
T  19786849 atgtagatatacacaggt 19786866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 45 - 235
Target Start/End: Original strand, 19471891 - 19472080
Alignment:
Q  45 cagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcga 144  Q
    |||||||||||| ||||||||||  ||| | |||| ||||||| |||||| ||||| |||| ||||||||||| |||||| | |||| ||||||||||||    
T  19471891 cagaagttcgcttaagcgaaccgcaagcgagccgttagcgagcggaaccccaactttctgtgagccggtcgcttaagcgagccagccatcgcttaagcga 19471990  T
Q  145 agtggaccttagtcagccactttctgaactttgctttgtgcattgagggga-ccttttgagcattctaaaatatctctttcaacttatataa 235  Q
    ||  |  ||| |||||||||||| |||| ||||||| ||||| | |||||| ||||||||||||| | |||| | || |||||||| |||||    
T  19471991 agaaggtctt-gtcagccactttttgaattttgcttcgtgcact-aggggatccttttgagcattttgaaatgtttccttcaacttgtataa 19472080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 34 - 145
Target Start/End: Original strand, 20008493 - 20008604
Alignment:
Q  34 tttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgt 133  Q
    |||||||||| ||  | |||||| |||||| |||||||| | |||||||||| ||||||||| || |||||||||| ||||||| |||||||||||||||    
T  20008493 tttgattctgccaagaattcgcttaagcgagccgtgagcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgt 20008592  T
Q  134 cgcttaagcgaa 145  Q
     |||||||||||    
T  20008593 tgcttaagcgaa 20008604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 354 - 470
Target Start/End: Complemental strand, 12167535 - 12167420
Alignment:
Q  354 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 452  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||||| || || | ||||||||||||||||||| | |||||| || ||  ||||||    
T  12167535 attgatgtatgtgcataattataaataattgtgtaag-tctggattgtttgagttgt-ggagtagtaagtcatatgatacatatgtagtggtcgagttgt 12167438  T
Q  453 atgtagatatacacaggt 470  Q
    ||||||||||||||||||    
T  12167437 atgtagatatacacaggt 12167420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 354 - 470
Target Start/End: Complemental strand, 19877628 - 19877513
Alignment:
Q  354 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 452  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||||| || || | ||||||||||||||||||| | |||||| || ||  ||||||    
T  19877628 attgatgtatgtgcataattataaataattgtgtaag-tctggattgtttgagttgt-ggagtagtaagtcatatgatacatatgtagtggtcgagttgt 19877531  T
Q  453 atgtagatatacacaggt 470  Q
    ||||||||||||||||||    
T  19877530 atgtagatatacacaggt 19877513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 354 - 470
Target Start/End: Complemental strand, 19883404 - 19883289
Alignment:
Q  354 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 452  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||||| || || | ||||||||||||||||||| | |||||| || ||  ||||||    
T  19883404 attgatgtatgtgcataattataaataattgtgtaag-tctggattgtttgagttgt-ggagtagtaagtcatatgatacatatgtagtggtcgagttgt 19883307  T
Q  453 atgtagatatacacaggt 470  Q
    ||||||||||||||||||    
T  19883306 atgtagatatacacaggt 19883289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 354 - 470
Target Start/End: Complemental strand, 19286444 - 19286329
Alignment:
Q  354 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 452  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||||| || || | ||||||||||||||||| | | |||||| || ||  ||||||    
T  19286444 attgatgtatgtgcataattataaataattgtgtaag-tctggattgtttgagttgt-ggagtagtaagtcatattatacatatgtagtggtcgagttgt 19286347  T
Q  453 atgtagatatacacaggt 470  Q
    ||||||||||||||||||    
T  19286346 atgtagatatacacaggt 19286329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 132 - 208
Target Start/End: Complemental strand, 9186903 - 9186827
Alignment:
Q  132 gtcgcttaagcgaagtggaccttagtcagccactttctgaactttgctttgtgcattgagggga-ccttttgagcatt 208  Q
    |||||||||||||||  ||||||||||||||||||| |||||||||||| ||||| | |||||| |||||||||||||    
T  9186903 gtcgcttaagcgaagatgaccttagtcagccactttttgaactttgcttcgtgcact-aggggatccttttgagcatt 9186827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 69 - 247
Target Start/End: Original strand, 19300317 - 19300495
Alignment:
Q  69 gagcaaaccgtaagcgagct-gaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagccacttt 167  Q
    |||| |||||| |||||||  ||| |||||||| ||||| || ||||||| |||||| ||| || ||||||||||||  ||  |||||||||||| || |    
T  19300317 gagcgaaccgtgagcgagcgagaatccaaacttcctgta-gctggtcgcttaagcgagctacccttcgcttaagcgagatgagccttagtcagcctctat 19300415  T
Q  168 ctgaactttgctttgtgcattgagggga-ccttttgagcattctaaaatatctctttcaacttatataatccttgtatagg 247  Q
    ||||||||||||| ||||| | |||||| ||||||||| ||| | || | | ||||| | ||| ||||| |||||||||||    
T  19300416 ctgaactttgcttcgtgcact-aggggacccttttgagtatttttaagtgtttcttttagcttgtataacccttgtatagg 19300495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 132 - 229
Target Start/End: Original strand, 24513456 - 24513553
Alignment:
Q  132 gtcgcttaagcgaagtggaccttagtcagccactttctgaactttgctttgtgcattgagggga-ccttttgagcattctaaaatatctctttcaactt 229  Q
    |||||||||||||||  ||||||||||||||||||| ||||| |||| | ||||| | |||||| ||||||||||||| | |||| |  ||||||||||    
T  24513456 gtcgcttaagcgaagatgaccttagtcagccactttttgaaccttgcctcgtgcact-aggggatccttttgagcatttttaaatgttcctttcaactt 24513553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 24513370 - 24513423
Alignment:
Q  15 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgt 68  Q
    ||||| ||||||||| |||||| |||||  ||||||||||||||||||||||||    
T  24513370 cctgtaagcgaaaaatcattttcattcttccagaagttcgctcaagcgaaccgt 24513423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 24513425 - 24513469
Alignment:
Q  81 agcgagctgaacccaaacttactgtaagccggtcgctcaagcgaa 125  Q
    ||||||| |||||||||||| |||| ||||||||||| |||||||    
T  24513425 agcgagcggaacccaaactttctgtgagccggtcgcttaagcgaa 24513469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 155; Significance: 4e-82; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 12 - 467
Target Start/End: Complemental strand, 18914646 - 18914193
Alignment:
Q  12 gaacctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccg 111  Q
    ||||| || ||||||||| || ||  |||||| |||||||||||| ||| ||||||  ||| |||| | ||||||| |||||| ||||  || |||||||    
T  18914646 gaacccgtaagcgaaaaatcaattccattctgccagaagttcgcttaagtgaaccgcaagcgaacctttagcgagcggaaccccaactctctataagccg 18914547  T
Q  112 gtcgctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaacttt-gctttgtgcattgagggga-ccttttgagcattc 209  Q
    |||||| ||||||||  ||| ||||||||||||||  ||||||||||||||||||| |||| ||| || | ||||||| |||||| ||||||||||||      
T  18914546 gtcgcttaagcgaacctgccatcgcttaagcgaagatgaccttagtcagccacttt-tgaatttttgcctcgtgcatt-aggggatccttttgagcatat 18914449  T
Q  210 taaaatatctctttcaacttatataatccttgtataggtagcagaaccctactaaa-cgctctgatgatcgaatttggttgatgttagtaaattttggag 308  Q
     | ||||| |||| |||||| ||||| | || ||||   | || || ||||||||| | ||||  |||| ||||| | ||||||||||| ||||||||||    
T  18914448 aataatatttcttccaacttgtataacctttatatataca-cataatcctactaaaacactctattgatggaattag-ttgatgttagtgaattttggag 18914351  T
Q  309 atgactgagtatgaaatcaagtgattatatattacattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgttagaatt 408  Q
    |||| ||||||||||||||||||| |||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |    
T  18914350 atgattgagtatgaaatcaagtgaatatatattatgttgaatgaaattgatgtatgagcataattataattaattgtgtatgttctggattgttggaa-t 18914252  T
Q  409 ttcggagtagtaagtcatatgaaatatatgtgtagttaagttgtatgtagatatacaca 467  Q
    | |||||| ||||||||||||||| |||||| | |||||||||||||||||||||||||    
T  18914251 tgcggagttgtaagtcatatgaaacatatgtattgttaagttgtatgtagatatacaca 18914193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 18 - 470
Target Start/End: Original strand, 41455687 - 41456142
Alignment:
Q  18 gtgagcgaaaaacca--ttttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaaccca-aacttactgtaagccggtc 114  Q
    |||||||||||||||  |||||||||||||  ||||||||||||||||||||||||| | |||||||||| ||||||||| ||| |||||||||| ||||    
T  41455687 gtgagcgaaaaaccaatttttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggtc 41455786  T
Q  115 gctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaact-ttgctttgtgcattgaggggaccttttgagcattc-taa 212  Q
    ||| |||||||||||||||||||||||||||||| |||||||||||||  |||||||||| |||||| ||||| ||||||||| |  ||||| ||| | |    
T  41455787 gcttaagcgaactagccgtcgcttaagcgaagtgaaccttagtcagcctttttctgaactgttgcttagtgca-tgaggggacttcctgagcgttcttta 41455885  T
Q  213 aatatctctttcaacttatataatccttgtataggtagcagaaccctacta-aacgctctgatgatcgaatttggttgatgttagtaaattttggagatg 311  Q
    | |  |||||| ||||| ||||||||| ||||||||| ||||| ||||||| |||   |||   |||||| ||| ||| ||||||||||| ||||||||     
T  41455886 acttcctcttt-aacttgtataatcctagtataggtatcagaatcctactagaacaagctggcaatcgaa-ttgattggtgttagtaaatgttggagata 41455983  T
Q  312 actgagtatgaa-atcaagtgattatatattac-attgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattt 409  Q
    | |||||| ||| || ||||||  |||||  || ||||||||||||||||||| | |||||||||||| |||||||| |||||||| |||||| | | ||    
T  41455984 attgagtaggaagattaagtga--atatacaactattgaatgaaattgatgtaagcgcataattataaataattgtgaatgttctgaattgtttg-agtt 41456080  T
Q  410 tcggagtagtaagtcatatgaaatatatg-tgtagttaagttgtatgtagatatacacaggt 470  Q
     |||||||||||||||||||||| |||||   ||||| ||||||||||||||||||||||||    
T  41456081 acggagtagtaagtcatatgaaacatatgcattagttgagttgtatgtagatatacacaggt 41456142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 18 - 164
Target Start/End: Complemental strand, 24192418 - 24192272
Alignment:
Q  18 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||| |||||||||||||||||||||    
T  24192418 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagtgagttgaacccagacttactgtaagccggtcgct 24192319  T
Q  118 caagcgaactagccgtcgcttaagcgaagtggaccttagtcagccac 164  Q
     ||||||||||||||||||||||||||||||||||||||||||||||    
T  24192318 taagcgaactagccgtcgcttaagcgaagtggaccttagtcagccac 24192272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 74 - 208
Target Start/End: Original strand, 16802041 - 16802175
Alignment:
Q  74 aaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaac 173  Q
    |||||||||||||| ||||||| ||||||||||||||||||||| |||||| |||||||||| ||||||||||| ||||||||| ||||||||| |||||    
T  16802041 aaccgtaagcgagcagaacccagacttactgtaagccggtcgcttaagcgagctagccgtcgtttaagcgaagttgaccttagttagccactttttgaac 16802140  T
Q  174 tttgctttgtgcattgagggga-ccttttgagcatt 208  Q
    ||||| |  |||||| |||||| |||||||||||||    
T  16802141 tttgcctcatgcatt-aggggacccttttgagcatt 16802175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 76 - 249
Target Start/End: Original strand, 13324376 - 13324549
Alignment:
Q  76 ccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaactt 175  Q
    |||| |||||||  ||||||||||| ||| ||||| |||||| |||||| | |||| ||||||||||||  ||  |||||||||||||||||||||| ||    
T  13324376 ccgtcagcgagcaaaacccaaactttctgcaagccagtcgcttaagcgagccagccttcgcttaagcgagctgagccttagtcagccactttctgaattt 13324475  T
Q  176 tgctttgtgcattgagggga-ccttttgagcattctaaaatatctctttcaacttatataatccttgtataggta 249  Q
    ||||| ||||||| |||||| |||||||||||||| || || | ||||||| ||||||||| |||||||||||||    
T  13324476 tgcttcgtgcatt-aggggacccttttgagcattcaaagatgtttctttcagcttatataacccttgtataggta 13324549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 74 - 178
Target Start/End: Original strand, 55499700 - 55499804
Alignment:
Q  74 aaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaac 173  Q
    |||||||||||||| ||||| | ||||||||||||||||||||| ||||||||||| ||||||||||||||||| || |||||||||||||||| |||||    
T  55499700 aaccgtaagcgagcagaacctagacttactgtaagccggtcgcttaagcgaactagacgtcgcttaagcgaagttgatcttagtcagccactttttgaac 55499799  T
Q  174 tttgc 178  Q
     ||||    
T  55499800 gttgc 55499804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 132 - 249
Target Start/End: Original strand, 13302844 - 13302961
Alignment:
Q  132 gtcgcttaagcgaagtggaccttagtcagccactttctgaactttgctttgtgcattgagggga-ccttttgagcattctaaaatatctctttcaactta 230  Q
    |||||||||||||  ||  |||||||||||||||||||||| ||||||| ||||||| |||||| |||||||||||||| || || | ||||||| ||||    
T  13302844 gtcgcttaagcgagctgagccttagtcagccactttctgaattttgcttcgtgcatt-aggggacccttttgagcattcaaagatgtttctttcagctta 13302942  T
Q  231 tataatccttgtataggta 249  Q
    ||||| |||||||||||||    
T  13302943 tataacccttgtataggta 13302961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 51 - 204
Target Start/End: Complemental strand, 14865338 - 14865184
Alignment:
Q  51 ttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccg-tcgcttaagcgaagtgg 149  Q
    |||||| |||||| |||||||| | |||||||||| ||||||||| || |||| ||||| ||||||| |||||||||||||| ||||||||||||| ||     
T  14865338 ttcgcttaagcgagccgtgagcgacccgtaagcgaactgaacccagacctactctaagctggtcgcttaagcgaactagccgttcgcttaagcgaactga 14865239  T
Q  150 accttagtcagccactttctgaactttgctttgtgcattgaggggaccttttgag 204  Q
       ||||||||||  ||||||||| |||||| ||||| | ||||  |||||||||    
T  14865238 gtgttagtcagcctttttctgaaccttgcttcgtgcactaagggatccttttgag 14865184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 345 - 402
Target Start/End: Original strand, 18136117 - 18136174
Alignment:
Q  345 ttgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 402  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  18136117 ttgaatgaaattgatgtatgagcataattataattaattgtgtatgttctggattgtt 18136174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 12 - 128
Target Start/End: Original strand, 17241085 - 17241201
Alignment:
Q  12 gaacctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccg 111  Q
    ||||| || ||||||||| || ||| ||||||||||||||||||||||||||||||  ||| |||||| ||||||| |||||| ||||  || |||| ||    
T  17241085 gaacccgtaagcgaaaaatcaatttcattctgtcagaagttcgctcaagcgaaccgcaagcgaaccgtcagcgagcggaaccccaactctctataagtcg 17241184  T
Q  112 gtcgctcaagcgaacta 128  Q
    |||||| ||||||||||    
T  17241185 gtcgcttaagcgaacta 17241201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 132 - 249
Target Start/End: Original strand, 13313520 - 13313637
Alignment:
Q  132 gtcgcttaagcgaagtggaccttagtcagccactttctgaactttgctttgtgcattgagggga-ccttttgagcattctaaaatatctctttcaactta 230  Q
    |||||||||||||  ||  |||||||||||||||||||||| ||||||| ||||||| |||||| |||||||||||||  || || | ||||||| ||||    
T  13313520 gtcgcttaagcgagctgagccttagtcagccactttctgaattttgcttcgtgcatt-aggggacccttttgagcatttaaagatgtttctttcagctta 13313618  T
Q  231 tataatccttgtataggta 249  Q
    ||||| |||||||||||||    
T  13313619 tataacccttgtataggta 13313637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 10390034 - 10390104
Alignment:
Q  16 ctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaac-cgtgagcaaaccgtaagcga 85  Q
    ||||||||||||||||||||||||||||||  || |||||||||||||||  |||||| |||||| |||||    
T  10390034 ctgtgagcgaaaaaccattttgattctgtccaaatttcgctcaagcgaacttgtgagcgaaccgtgagcga 10390104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 10415123 - 10415193
Alignment:
Q  16 ctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaac-cgtgagcaaaccgtaagcga 85  Q
    ||||||||||||||||||||||||||||||  || |||||||||||||||  |||||| |||||| |||||    
T  10415123 ctgtgagcgaaaaaccattttgattctgtccaaatttcgctcaagcgaacttgtgagcgaaccgtgagcga 10415193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 10421793 - 10421863
Alignment:
Q  16 ctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaac-cgtgagcaaaccgtaagcga 85  Q
    ||||||||||||||||||||||||||||||  || |||||||||||||||  |||||| |||||| |||||    
T  10421793 ctgtgagcgaaaaaccattttgattctgtccaaatttcgctcaagcgaacttgtgagcgaaccgtgagcga 10421863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 124 - 208
Target Start/End: Original strand, 17243260 - 17243343
Alignment:
Q  124 aactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaactttgctttgtgcattgagggga-ccttttgagcatt 208  Q
    |||||||| ||||||||||||||  ||||||||||||||||||| |||||||||| | ||||| | |||||| |||||||||||||    
T  17243260 aactagccatcgcttaagcgaagatgaccttagtcagccacttt-tgaactttgcctcgtgcact-aggggatccttttgagcatt 17243343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 349 - 402
Target Start/End: Original strand, 18129607 - 18129660
Alignment:
Q  349 atgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 402  Q
    |||||||||||||| | ||||||||||||||||||||| |||||||| ||||||    
T  18129607 atgaaattgatgtacgagcataattataattaattgtgaatgttctgaattgtt 18129660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 467
Target Start/End: Original strand, 18136249 - 18136306
Alignment:
Q  411 cggagtagtaagtcatatgaaat-atatgtgtagttaagttgtatgtagatatacaca 467  Q
    |||||| |||||||||||||||  |||||  | |||||||||||||||||||||||||    
T  18136249 cggagttgtaagtcatatgaaaacatatgcatggttaagttgtatgtagatatacaca 18136306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 412 - 467
Target Start/End: Original strand, 18129736 - 18129792
Alignment:
Q  412 ggagtagtaagtcatatgaaata-tatgtgtagttaagttgtatgtagatatacaca 467  Q
    ||||| ||||||||||||||| | ||||  | |||||||||||||||||||||||||    
T  18129736 ggagttgtaagtcatatgaaaaaatatgcatggttaagttgtatgtagatatacaca 18129792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 135; Significance: 4e-70; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 18 - 164
Target Start/End: Original strand, 14977 - 15123
Alignment:
Q  18 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  14977 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacttactgtaagccggtcgct 15076  T
Q  118 caagcgaactagccgtcgcttaagcgaagtggaccttagtcagccac 164  Q
     ||||||||||||||||||||||||||||||||||||||||||||||    
T  15077 taagcgaactagccgtcgcttaagcgaagtggaccttagtcagccac 15123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 1e-51; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 13743174 - 13742945
Alignment:
Q  18 gtgagcgaaaaaccatttt-gattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgc 116  Q
    ||||||||||||| ||||| |||||||||  ||||||||||||||||||||||||| | |||||||||||||||||||| || |||| ||||||||||||    
T  13743174 gtgagcgaaaaacaatttttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgagctgaacccagacctactataagccggtcgc 13743075  T
Q  117 tcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaac-tttgctttgtgcattgaggggaccttttgagcattctaaaat 215  Q
    | ||||||||||||||||||||||||||||||  ||||||||||||   |||||||| |||| || ||||| ||||||||| | |||||||||||| |||    
T  13743074 ttaagcgaactagccgtcgcttaagcgaagtgagccttagtcagcc---ttctgaacttttgtttcgtgca-tgaggggacttcttgagcattctataat 13742979  T
Q  216 atctctttcaacttatataatccttgtataggta 249  Q
    || ||||| ||||  ||||| ||| || ||||||    
T  13742978 atttcttttaactagtataaccctggtgtaggta 13742945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 15 - 210
Target Start/End: Complemental strand, 13006901 - 13006706
Alignment:
Q  15 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaaccca-aacttactgtaagccggt 113  Q
    |||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||| | |||||||||| ||||||||| ||| |||||||||| |||    
T  13006901 cctgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggt 13006802  T
Q  114 cgctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaact-ttgctttgtgcattgaggggaccttttgagcattct 210  Q
    |||| |||||||||||||||||||||||||||||| |||||| ||||||  |||||||||| |||||| ||||| ||||||||| | |||||| ||||    
T  13006801 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcc-ttttctgaactgttgcttagtgca-tgaggggacttcttgagcgttct 13006706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 13123506 - 13123698
Alignment:
Q  18 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgct 117  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||| | |||||||||| ||||||||| || |||||||||  |||||||    
T  13123506 gtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgct 13123605  T
Q  118 caagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaact-ttgctttgtgcattgaggggaccttttgagcattcta 211  Q
     |||||| |||||||||||||||||||||||   |||||||||||  |||||||||| || ||| ||||| ||||||||| | ||||||||||||    
T  13123606 taagcgagctagccgtcgcttaagcgaagtgagtcttagtcagcc-ttttctgaactattacttagtgca-tgaggggacttcttgagcattcta 13123698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 15 - 161
Target Start/End: Original strand, 12591230 - 12591377
Alignment:
Q  15 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaaccca-aacttactgtaagccggt 113  Q
    |||||||||||||||||||||||||||||||  || |||||||||||||||||||||| | |||||||||| |||| |||| | | |||||||||| |||    
T  12591230 cctgtgagcgaaaaaccattttgattctgtccaaatttcgctcaagcgaaccgtgagcgacccgtaagcgaactgatcccagatcctactgtaagctggt 12591329  T
Q  114 cgctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagc 161  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||    
T  12591330 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttagtcagc 12591377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 12 - 235
Target Start/End: Complemental strand, 13678995 - 13678772
Alignment:
Q  12 gaacctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccg 111  Q
    ||||| || ||||||||| |||||  ||||||||||||||||||| ||||||||||  ||| || ||| ||||||   ||||| ||||  ||||||||||    
T  13678995 gaacccgtaagcgaaaaatcatttccattctgtcagaagttcgcttaagcgaaccgcaagcgaaacgttagcgagggaaaccccaactctctgtaagccg 13678896  T
Q  112 gtcgctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaactttgctttgtgcattgagggga-ccttttgagcattct 210  Q
    |||||| |||||||| |||||||||||||||||||  ||||||||||||||||||| |||||||||| | ||||||| |||||| |||||||||||||      
T  13678895 gtcgcttaagcgaaccagccgtcgcttaagcgaagatgaccttagtcagccactttttgaactttgcctcgtgcatt-aggggatccttttgagcattaa 13678797  T
Q  211 aaaatatctctttcaacttatataa 235  Q
    ||||| | |||||||| || |||||    
T  13678796 aaaatgtttctttcaatttgtataa 13678772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 12 - 208
Target Start/End: Complemental strand, 16676845 - 16676660
Alignment:
Q  12 gaacctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccg 111  Q
    |||||||| ||||||||||||||||||||||||||  | |||||||||||||||| |           |||||||| ||||||| |||||||||||||||    
T  16676845 gaacctgtaagcgaaaaaccattttgattctgtcaagaattcgctcaagcgaaccat-----------aagcgagcggaacccagacttactgtaagccg 16676757  T
Q  112 gtcgctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaactttgctttgtgcattgaggggacc-ttttgagcatt 208  Q
    |||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||| |||| | ||||||| |||||||| |||||||||||    
T  16676756 gtcgcttaagcgaactagtcgtcgcttaagcgaagttgaccttagtcagccactttttgaacgttgcctcgtgcatt-aggggacccttttgagcatt 16676660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 12 - 208
Target Start/End: Complemental strand, 17651081 - 17650896
Alignment:
Q  12 gaacctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccg 111  Q
    |||||||| ||||||||||||||||||||||||||  | |||||||||||||||| |           |||||||| ||||||| |||||||||||||||    
T  17651081 gaacctgtaagcgaaaaaccattttgattctgtcaagaattcgctcaagcgaaccat-----------aagcgagcggaacccagacttactgtaagccg 17650993  T
Q  112 gtcgctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaactttgctttgtgcattgaggggacc-ttttgagcatt 208  Q
    |||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||| |||| | ||||||| |||||||| |||||||||||    
T  17650992 gtcgcttaagcgaactagtcgtcgcttaagcgaagttgaccttagtcagccactttttgaacgttgcctcgtgcatt-aggggacccttttgagcatt 17650896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 12710435 - 12710627
Alignment:
Q  18 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgct 117  Q
    |||||| |||||||||||||||||||||  ||||||||||||||||||||||||| | | |||||||| ||||||||| || |||||||||  |||||||    
T  12710435 gtgagccaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacctgtaagcgaactgaacccagacctactgtaagttggtcgct 12710534  T
Q  118 caagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaact-ttgctttgtgcattgaggggaccttttgagcattcta 211  Q
     |||||| |||||||||||||||||||||||   |||||||||||  |||||||||| || ||| ||||| ||||||||| | ||||||||||||    
T  12710535 taagcgagctagccgtcgcttaagcgaagtgagtcttagtcagcc-ttttctgaactattacttagtgca-tgaggggacttcttgagcattcta 12710627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 3857953 - 3858082
Alignment:
Q  17 tgtgagcgaaaaaccatttt-gattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcg 115  Q
    |||||||||||||||||||| ||||||||   ||||||||||||||||||||||||| | |||||||||| ||||||||| || |||||||||  |||||    
T  3857953 tgtgagcgaaaaaccatttttgattctgttcaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcg 3858052  T
Q  116 ctcaagcgaactagccgtcgcttaagcgaa 145  Q
    || |||||| ||||||||||||||||||||    
T  3858053 cttaagcgagctagccgtcgcttaagcgaa 3858082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 74 - 178
Target Start/End: Original strand, 11389922 - 11390026
Alignment:
Q  74 aaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaac 173  Q
    |||||||||||||| ||||||| ||||||||| || |||||||| |||||| |||||||||||||||||||||  ||||||||||||||||||| |||||    
T  11389922 aaccgtaagcgagcggaacccagacttactgtgagtcggtcgcttaagcgagctagccgtcgcttaagcgaagatgaccttagtcagccactttttgaac 11390021  T
Q  174 tttgc 178  Q
    |||||    
T  11390022 tttgc 11390026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 34 - 178
Target Start/End: Original strand, 20311597 - 20311740
Alignment:
Q  34 tttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgt 133  Q
    |||||||||| ||  | |||||| ||||||||||  ||| |||||||||||||| ||||||| |||||||| |||||||||||| |||||| ||||||||    
T  20311597 tttgattctgccaagaattcgcttaagcgaaccgcaagcgaaccgtaagcgagcagaacccagacttactgcaagccggtcgcttaagcgagctagccgt 20311696  T
Q  134 cgcttaagcgaagtggaccttagtcagccactttctgaactttgc 178  Q
    |||||||||||||  ||||| ||| ||||||||| ||||||||||    
T  20311697 cgcttaagcgaagatgacctcagttagccacttt-tgaactttgc 20311740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 354 - 471
Target Start/End: Original strand, 12710780 - 12710896
Alignment:
Q  354 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 452  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||  || || | |||||| ||||||||||||||||||||| |||||| ||||||    
T  12710780 attgatgtatgtgcataattataaataattgtgtatgttctgaattgtc-gagttat-ggagtattaagtcatatgaaatatatgtagtagttgagttgt 12710877  T
Q  453 atgtagatatacacaggtt 471  Q
    |||||||||||||||||||    
T  12710878 atgtagatatacacaggtt 12710896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 354 - 471
Target Start/End: Original strand, 13123851 - 13123967
Alignment:
Q  354 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 452  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||  || || | |||||| ||||||||||||||||||||| |||||| ||||||    
T  13123851 attgatgtatgtgcataattataaataattgtgtatgttctgaattgtc-gagttgt-ggagtattaagtcatatgaaatatatgtagtagttgagttgt 13123948  T
Q  453 atgtagatatacacaggtt 471  Q
    |||||||||||||||||||    
T  13123949 atgtagatatacacaggtt 13123967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 40 - 229
Target Start/End: Complemental strand, 46625464 - 46625275
Alignment:
Q  40 tctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgctta 139  Q
    |||| |||||||||||| |||||||||| ||||||||| | ||||||| |||| | ||||  |||||||| ||||||| |||||| | ||||||||||||    
T  46625464 tctgccagaagttcgcttaagcgaaccgcgagcaaaccattagcgagcagaacgccaactctctgtaagcaggtcgcttaagcgagccagccgtcgctta 46625365  T
Q  140 agcgaagtggaccttagtcagccactttctgaactttgctttgtgcattgagggga-ccttttgagcattctaaaatatctctttcaactt 229  Q
    |||||||| |  |||||||||||||| | |||| |||| || ||||| | |||| | ||||||||||||| |||||| | |||||||||||    
T  46625364 agcgaagtaggtcttagtcagccactctttgaattttgtttcgtgcact-agggaatccttttgagcattttaaaatgtttctttcaactt 46625275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 34 - 145
Target Start/End: Complemental strand, 2464874 - 2464763
Alignment:
Q  34 tttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgt 133  Q
    ||||||||||||  |||||||| |||||||||||||||| | |||||||||| ||||||||| || |||||||||  ||||||| |||||| ||||||||    
T  2464874 tttgattctgtccaaagttcgcccaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaagcgagctagccgt 2464775  T
Q  134 cgcttaagcgaa 145  Q
    ||||||||||||    
T  2464774 cgcttaagcgaa 2464763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 80 - 178
Target Start/End: Original strand, 11383440 - 11383538
Alignment:
Q  80 aagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaactttgc 178  Q
    |||||||| ||||||| ||||||||| |||| |||||| |||||| |||||||||||||||||||||  ||||||||||||||||||| ||||||||||    
T  11383440 aagcgagcggaacccagacttactgtgagcctgtcgcttaagcgagctagccgtcgcttaagcgaagatgaccttagtcagccactttttgaactttgc 11383538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 354 - 471
Target Start/End: Complemental strand, 13742803 - 13742686
Alignment:
Q  354 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 452  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||| || || | ||||||||||||||||||||| ||||||  ||||  ||||||    
T  13742803 attgatgtatgagcataattataaataattgtgtatgttctggattgtttgagttgt-ggagtagtaagtcatatgaaacatatgtaatagtcgagttgt 13742705  T
Q  453 atgtagatatacacaggtt 471  Q
    |||| ||||||||||||||    
T  13742704 atgttgatatacacaggtt 13742686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 34 - 204
Target Start/End: Complemental strand, 16090595 - 16090425
Alignment:
Q  34 tttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgt 133  Q
    |||||||||| ||  | |||||| |||| | |||||||| | |||||||||| ||||||||| || |||||||||  ||||||| |||||| ||||||||    
T  16090595 tttgattctgccaagaattcgcttaagcaagccgtgagcgacccgtaagcgaactgaacccagacctactgtaagatggtcgcttaagcgagctagccgt 16090496  T
Q  134 cgcttaagcgaagtggaccttagtcagccactttctgaactttgctttgtgcattgaggggaccttttgag 204  Q
    |||||||||||| ||    ||||||||||  ||||||||| |||||| ||||| | ||||  |||||||||    
T  16090495 cgcttaagcgaactgagtgttagtcagcctttttctgaaccttgcttcgtgcactaagggatccttttgag 16090425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 34 - 206
Target Start/End: Original strand, 29181654 - 29181826
Alignment:
Q  34 tttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgt 133  Q
    |||||||||| ||  |||||||| |||||| |||||||| | || ||||||| ||||||||| || |||||||||  ||||||| |||||| ||||||||    
T  29181654 tttgattctgccaagagttcgcttaagcgagccgtgagcgacccataagcgaactgaacccagacctactgtaagatggtcgcttaagcgagctagccgt 29181753  T
Q  134 cgcttaagcgaagtggaccttagtcagccactttctgaactttgctttgtgcattgaggggaccttttgagca 206  Q
    ||||||||| || ||    |||||||| |  ||||||||| |||||| ||||| | ||||  |||||||||||    
T  29181754 cgcttaagcaaactgagtgttagtcagtctttttctgaaccttgcttcgtgcactaagggatccttttgagca 29181826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 354 - 470
Target Start/End: Complemental strand, 13006604 - 13006489
Alignment:
Q  354 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 452  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||||| || || | ||||||||||||||||| | | |||||| || ||  ||||||    
T  13006604 attgatgtatgtgcataattataaataattgtgtaag-tctggattgtttgagttgt-ggagtagtaagtcatattatacatatgtagtggtcgagttgt 13006507  T
Q  453 atgtagatatacacaggt 470  Q
    ||||||||||||||||||    
T  13006506 atgtagatatacacaggt 13006489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 50 - 173
Target Start/End: Original strand, 14320192 - 14320316
Alignment:
Q  50 gttcgctcaagcgaaccgtgagcaaaccgtaagcgagct-gaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcgaagtg 148  Q
    ||||||||||||||||||||||| ||| || |||||||  | |||  ||||| |||| ||||||||||| |||||| ||| || ||||||||||||| ||    
T  14320192 gttcgctcaagcgaaccgtgagcgaactgtgagcgagcgaggacctcaactttctgtgagccggtcgcttaagcgagctacccttcgcttaagcgaactg 14320291  T
Q  149 gaccttagtcagccactttctgaac 173  Q
      ||||||||||||  |||||||||    
T  14320292 agccttagtcagcctttttctgaac 14320316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 74 - 178
Target Start/End: Original strand, 21231571 - 21231674
Alignment:
Q  74 aaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaac 173  Q
    |||||| ||||||| |||||| ||||| |||| ||| ||||||| |||| |||| | ||||||||||||||||  |||||| |||||||||||| |||||    
T  21231571 aaccgtcagcgagcggaaccccaactttctgtgagctggtcgcttaagcaaactggtcgtcgcttaagcgaagatgacctttgtcagccacttt-tgaac 21231669  T
Q  174 tttgc 178  Q
    |||||    
T  21231670 tttgc 21231674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 397
Target Start/End: Complemental strand, 18607342 - 18607248
Alignment:
Q  303 ttggagatgactgagtatgaaatcaagtgattatatattacattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctgga 397  Q
    |||||||||| ||||||||||| |||||||  ||||| ||  ||||||||| |||||| ||  |  | ||||| ||||||||||||| |||||||    
T  18607342 ttggagatgattgagtatgaaaccaagtgaacatatactatgttgaatgaacttgatgcattagtttgattatgattaattgtgtattttctgga 18607248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 397
Target Start/End: Original strand, 16475930 - 16475983
Alignment:
Q  344 attgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctgga 397  Q
    |||||||||| | |||||||| |||| ||||| ||||||||||||| |||||||    
T  16475930 attgaatgaactcgatgtatgagcatgattatgattaattgtgtattttctgga 16475983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 358 - 402
Target Start/End: Complemental strand, 13318051 - 13318007
Alignment:
Q  358 atgtatgtgcataattataattaattgtgtatgttctggattgtt 402  Q
    ||||||| |||||||||| ||||||||||||  ||||||||||||    
T  13318051 atgtatgcgcataattatgattaattgtgtaatttctggattgtt 13318007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 85
Target Start/End: Complemental strand, 13679030 - 13678982
Alignment:
Q  38 attctgtcagaagttcgctcaagcgaaccgtgagc-aaaccgtaagcga 85  Q
    ||||||||||| | ||||||||||||||||||||| || ||||||||||    
T  13679030 attctgtcagacgctcgctcaagcgaaccgtgagcgaacccgtaagcga 13678982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 2e-50; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 15 - 210
Target Start/End: Complemental strand, 23528099 - 23527904
Alignment:
Q  15 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaaccca-aacttactgtaagccggt 113  Q
    |||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||| | |||||||||| ||||||||| ||| |||||||||| |||    
T  23528099 cctgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggt 23528000  T
Q  114 cgctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaact-ttgctttgtgcattgaggggaccttttgagcattct 210  Q
    |||| |||||||||||||||||||||||||||||| |||||| ||||||  |||||||||| |||||| ||||| ||||||||| | |||||| ||||    
T  23527999 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcc-ttttctgaactgttgcttagtgca-tgaggggacttcttgagcgttct 23527904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 38 - 178
Target Start/End: Original strand, 18408491 - 18408631
Alignment:
Q  38 attctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgct 137  Q
    |||||| |||||||||||| ||||||  ||  ||| |||||| ||||||| |||||| ||||| |||||||||||||||| |||| ||||||||||||||    
T  18408491 attctgccagaagttcgcttaagcgagtcgcaagcgaaccgttagcgagcggaaccccaactttctgtaagccggtcgcttaagcaaactagccgtcgct 18408590  T
Q  138 taagcgaagtggaccttagtcagccactttctgaactttgc 178  Q
    ||||||||   ||||||||||||||||||| ||||||||||    
T  18408591 taagcgaaaatgaccttagtcagccactttttgaactttgc 18408631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 28889925 - 28890053
Alignment:
Q  17 tgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgc 116  Q
    ||||||||||||||||||||| |||||||  |||||||| ||||||| |||||||| | |||||||||| ||||||||| || |||||||||  ||||||    
T  28889925 tgtgagcgaaaaaccattttgtttctgtccaaagttcgcccaagcgagccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgc 28890024  T
Q  117 tcaagcgaactagccgtcgcttaagcgaa 145  Q
    | ||||||  |||||||||||||||||||    
T  28890025 ttaagcgagatagccgtcgcttaagcgaa 28890053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 28896629 - 28896757
Alignment:
Q  17 tgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgc 116  Q
    ||||||||||||||||||||| |||||||  |||||||| ||||||| |||||||| | |||||||||| ||||||||| || |||||||||  ||||||    
T  28896629 tgtgagcgaaaaaccattttgtttctgtccaaagttcgcccaagcgagccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgc 28896728  T
Q  117 tcaagcgaactagccgtcgcttaagcgaa 145  Q
    | ||||||  |||||||||||||||||||    
T  28896729 ttaagcgagatagccgtcgcttaagcgaa 28896757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 28909877 - 28910005
Alignment:
Q  17 tgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgc 116  Q
    ||||||||||||||||||||| |||||||  |||||||| ||||||| |||||||| | |||||||||| ||||||||| || |||||||||  ||||||    
T  28909877 tgtgagcgaaaaaccattttgtttctgtccaaagttcgcccaagcgagccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgc 28909976  T
Q  117 tcaagcgaactagccgtcgcttaagcgaa 145  Q
    | ||||||  |||||||||||||||||||    
T  28909977 ttaagcgagatagccgtcgcttaagcgaa 28910005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 28931569 - 28931697
Alignment:
Q  17 tgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgc 116  Q
    ||||||||||||||||||||| |||||||  |||||||| ||||||| |||||||| | |||||||||| ||||||||| || |||||||||  ||||||    
T  28931569 tgtgagcgaaaaaccattttgtttctgtccaaagttcgcccaagcgagccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgc 28931668  T
Q  117 tcaagcgaactagccgtcgcttaagcgaa 145  Q
    | ||||||  |||||||||||||||||||    
T  28931669 ttaagcgagatagccgtcgcttaagcgaa 28931697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 28946272 - 28946400
Alignment:
Q  17 tgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgc 116  Q
    ||||||||||||||||||||| |||||||  |||||||| ||||||| |||||||| | |||||||||| ||||||||| || |||||||||  ||||||    
T  28946272 tgtgagcgaaaaaccattttgtttctgtccaaagttcgcccaagcgagccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgc 28946371  T
Q  117 tcaagcgaactagccgtcgcttaagcgaa 145  Q
    | ||||||  |||||||||||||||||||    
T  28946372 ttaagcgagatagccgtcgcttaagcgaa 28946400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 34 - 145
Target Start/End: Complemental strand, 19236410 - 19236299
Alignment:
Q  34 tttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgt 133  Q
    |||||||||| ||  | |||||| |||||| |||||||| | || ||||||| ||||||||| || |||||||||| ||||||| |||||||||||||||    
T  19236410 tttgattctgccaagaattcgcttaagcgagccgtgagcgacccataagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgt 19236311  T
Q  134 cgcttaagcgaa 145  Q
    ||||||||||||    
T  19236310 cgcttaagcgaa 19236299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 345 - 402
Target Start/End: Original strand, 22232436 - 22232493
Alignment:
Q  345 ttgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 402  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  22232436 ttgaatgaaattgatgtatgagcataattataattaatcgtgtatgttctggattgtt 22232493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 34 - 143
Target Start/End: Complemental strand, 22467290 - 22467181
Alignment:
Q  34 tttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgt 133  Q
    |||||||||| ||  | |||||| |||||| |||||||| | || ||||||| ||||||||| || |||||||||| ||||| | |||||||||||||||    
T  22467290 tttgattctgccaagaattcgcttaagcgagccgtgagcgacccataagcgaactgaacccagacctactgtaagctggtcggttaagcgaactagccgt 22467191  T
Q  134 cgcttaagcg 143  Q
    ||||||||||    
T  22467190 cgcttaagcg 22467181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 34 - 145
Target Start/End: Complemental strand, 22460666 - 22460555
Alignment:
Q  34 tttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgt 133  Q
    |||||||||| ||  | |||||| |||||| |||||||  | || |||||||  |||||||| || |||||||||| ||||||| |||||||||||||||    
T  22460666 tttgattctgccaagaattcgcttaagcgagccgtgagtgacccataagcgaattgaacccagacctactgtaagctggtcgcttaagcgaactagccgt 22460567  T
Q  134 cgcttaagcgaa 145  Q
    ||||||||||||    
T  22460566 cgcttaagcgaa 22460555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 354 - 470
Target Start/End: Complemental strand, 23527747 - 23527632
Alignment:
Q  354 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 452  Q
    |||||||||||||||||||||||| |||||||||  || ||||||| || || || | ||||||||||||||||||| | |||||| || ||  ||||||    
T  23527747 attgatgtatgtgcataattataaataattgtgtcagt-ctggattatttgagttgt-ggagtagtaagtcatatgatacatatgtagtggtcgagttgt 23527650  T
Q  453 atgtagatatacacaggt 470  Q
    ||||||||||||||||||    
T  23527649 atgtagatatacacaggt 23527632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 28933070 - 28933200
Alignment:
Q  17 tgtgagcgaaaaacca-ttttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaa-cccaaacttactgtaagccggtc 114  Q
    |||||||||||||||| ||||| |||||||  ||||||||  |||||| |||||||| | |||||||||| ||||| |||| || |||||||||  ||||    
T  28933070 tgtgagcgaaaaaccatttttgtttctgtccaaagttcgccaaagcgagccgtgagcgacccgtaagcgaactgaaccccagacctactgtaagttggtc 28933169  T
Q  115 gctcaagcgaactagccgtcgcttaagcgaa 145  Q
    | | ||||||  ||||||| |||||||||||    
T  28933170 gtttaagcgagatagccgtggcttaagcgaa 28933200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 20819689 - 20819618
Alignment:
Q  15 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaac-cgtgagcaaaccgtaagcga 85  Q
    |||||||||||||||||||||||||||||||  || |||||||||||||||  |||||| |||||| |||||    
T  20819689 cctgtgagcgaaaaaccattttgattctgtccaaatttcgctcaagcgaacttgtgagcgaaccgtgagcga 20819618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 20826789 - 20826718
Alignment:
Q  15 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaac-cgtgagcaaaccgtaagcga 85  Q
    |||||||||||||||||||||||||||||||  || |||||||||||||||  |||||| |||||| |||||    
T  20826789 cctgtgagcgaaaaaccattttgattctgtccaaatttcgctcaagcgaacttgtgagcgaaccgtgagcga 20826718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 50 - 186
Target Start/End: Complemental strand, 34829578 - 34829441
Alignment:
Q  50 gttcgctcaagcgaaccgtgagcaaaccgtaagcgagct-gaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcgaagtg 148  Q
    |||||||||||||||| | |||| |||||| || ||||  |||||| ||| |  ||| ||| ||||||| |||||| ||| || ||||||||||||| ||    
T  34829578 gttcgctcaagcgaactgcgagcgaaccgtgagtgagcgagaaccccaaccttttgtgagctggtcgcttaagcgagctacccttcgcttaagcgaactg 34829479  T
Q  149 gaccttagtcagccactttctgaactttgctttgtgca 186  Q
      ||||||||| ||  |||||||||||||||| |||||    
T  34829478 agccttagtcaacctttttctgaactttgcttcgtgca 34829441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 74 - 122
Target Start/End: Original strand, 22439322 - 22439370
Alignment:
Q  74 aaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagc 122  Q
    |||| ||||||||| ||||||| ||||||||||||||||||||| ||||    
T  22439322 aaccttaagcgagcagaacccagacttactgtaagccggtcgcttaagc 22439370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 22439360 - 22439406
Alignment:
Q  132 gtcgcttaagcgaagtggaccttagtcagccactttctgaactttgc 178  Q
    ||||||||||| |||| ||||||||||||||||||| ||||| ||||    
T  22439360 gtcgcttaagcaaagttgaccttagtcagccactttttgaacgttgc 22439406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 467
Target Start/End: Original strand, 22232568 - 22232625
Alignment:
Q  411 cggagtagtaagtcatatgaaat-atatgtgtagttaagttgtatgtagatatacaca 467  Q
    |||||| |||||||||||||||  |||||  | |||||||||||||||||||||||||    
T  22232568 cggagtcgtaagtcatatgaaaacatatgcattgttaagttgtatgtagatatacaca 22232625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 3e-49; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 17 - 210
Target Start/End: Complemental strand, 41111407 - 41111214
Alignment:
Q  17 tgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaaccca-aacttactgtaagccggtcg 115  Q
    |||||||||||||||||||| ||||||||  ||||||||||||||||||||||||| | |||||||||| ||||||||| ||| |||||||||| |||||    
T  41111407 tgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggtcg 41111308  T
Q  116 ctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaact-ttgctttgtgcattgaggggaccttttgagcattct 210  Q
    || |||||||||||||||||||||||||||||| |||||| ||||||  |||||||||| |||||| ||||| ||||||||| | |||||| ||||    
T  41111307 cttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcc-ttttctgaactgttgcttagtgca-tgaggggacttcttgagcgttct 41111214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 75 - 176
Target Start/End: Complemental strand, 18712218 - 18712117
Alignment:
Q  75 accgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaact 174  Q
    ||||| ||||||| |||||| ||||| |||||||| ||||||| ||||||||||||||||||||||||||||  |||||||||||||||| || ||||||    
T  18712218 accgttagcgagcggaaccccaactttctgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaagatgaccttagtcagccaccttttgaact 18712119  T
Q  175 tt 176  Q
    ||    
T  18712118 tt 18712117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 34 - 145
Target Start/End: Original strand, 20858305 - 20858416
Alignment:
Q  34 tttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgt 133  Q
    |||||||||| ||  | |||||| |||||| |||||||| | |||||||||| ||||||||| || |||||||||| ||||||| |||||||||||||||    
T  20858305 tttgattctgccaagaattcgcttaagcgagccgtgagcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgt 20858404  T
Q  134 cgcttaagcgaa 145  Q
    ||||||||||||    
T  20858405 cgcttaagcgaa 20858416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 34 - 145
Target Start/End: Complemental strand, 21705785 - 21705674
Alignment:
Q  34 tttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgt 133  Q
    |||||||||| ||  | |||||| |||||| |||||||| | |||||||||| ||||||||| || |||||||||| ||||||| |||||||||||||||    
T  21705785 tttgattctgccaagaattcgcttaagcgagccgtgagcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgt 21705686  T
Q  134 cgcttaagcgaa 145  Q
    ||||||||||||    
T  21705685 cgcttaagcgaa 21705674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 34 - 145
Target Start/End: Complemental strand, 21710328 - 21710217
Alignment:
Q  34 tttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgt 133  Q
    |||||||||| ||  | |||||| |||||| |||||||| |||| ||||||| ||||||||| || |||||||||| ||||||| |||||||||||||||    
T  21710328 tttgattctgccaagaattcgcttaagcgagccgtgagcgaaccataagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgt 21710229  T
Q  134 cgcttaagcgaa 145  Q
    ||||||||||||    
T  21710228 cgcttaagcgaa 21710217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 34 - 145
Target Start/End: Original strand, 20851678 - 20851789
Alignment:
Q  34 tttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgt 133  Q
    |||||||||| ||  | |||||| |||||| |||||||| | || ||||||| ||||||||| || |||||||||| ||||||| |||||||||||||||    
T  20851678 tttgattctgccaagaattcgcttaagcgagccgtgagcgacccataagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgt 20851777  T
Q  134 cgcttaagcgaa 145  Q
    ||||||||||||    
T  20851778 cgcttaagcgaa 20851789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 345 - 402
Target Start/End: Original strand, 20941657 - 20941714
Alignment:
Q  345 ttgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 402  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  20941657 ttgaatgaaattgatgtatgagcataattataattaattgtgtatgttctggattgtt 20941714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 354 - 470
Target Start/End: Complemental strand, 41111112 - 41110997
Alignment:
Q  354 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 452  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||||| || || | ||||||||||||||||||| | |||||| || ||  ||||||    
T  41111112 attgatgtatgtgcataattataaataattgtgtaag-tctggattgtttgagttgt-ggagtagtaagtcatatgatacatatgtagtggtcgagttgt 41111015  T
Q  453 atgtagatatacacaggt 470  Q
    ||||||||||||||||||    
T  41111014 atgtagatatacacaggt 41110997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 40 - 245
Target Start/End: Original strand, 22030298 - 22030504
Alignment:
Q  40 tctgtcagaagttcgctcaagcgaaccgtgagc-aaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgctt 138  Q
    |||| ||||||||||||  |||||||||||||| ||||| | ||||||| |||| | ||||  ||||||||| |||||| |||||| | |||| ||||||    
T  22030298 tctgccagaagttcgcttgagcgaaccgtgagcgaaacccttagcgagcagaacaccaactctctgtaagccagtcgcttaagcgagccagccttcgctt 22030397  T
Q  139 aagcgaagtggaccttagtcagccactttctgaactttgctttgtgcattgagggga-ccttttgagcattctaaaatatctctttcaacttatataatc 237  Q
    ||||||||  |  |||||||||||||||| | |  |||||||  |||| | |||  | |||||||||||||||| ||| | ||||||||||| ||||| |    
T  22030398 aagcgaagaaggtcttagtcagccactttttaatttttgcttcttgcact-aggaaatccttttgagcattctataatgtttctttcaacttgtataacc 22030496  T
Q  238 cttgtata 245  Q
     |||||||    
T  22030497 tttgtata 22030504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 132 - 245
Target Start/End: Complemental strand, 11157554 - 11157441
Alignment:
Q  132 gtcgcttaagcgaagtggaccttagtcagccactttctgaactttgctttgtgcattgagggga-ccttttgagcattctaaaatatctctttcaactta 230  Q
    |||||||||||||||  ||||||||||| ||||||| |||||||||| | ||||||| |||||| |||||||||||||  ||||| | |||||||||||     
T  11157554 gtcgcttaagcgaagatgaccttagtcaaccactttttgaactttgcctcgtgcatt-aggggatccttttgagcatttaaaaatgtttctttcaacttg 11157456  T
Q  231 tataatccttgtata 245  Q
    ||||| |||| ||||    
T  11157455 tataacccttatata 11157441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 49 - 186
Target Start/End: Complemental strand, 19961684 - 19961547
Alignment:
Q  49 agttcgctcaagcgaaccgtgagcaaaccgtaagcgagct-gaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcgaagt 147  Q
    ||||||||| |||||||||  ||| |||||| |||||||  ||| |||||||| ||||| || ||||||| |||||| ||| || ||||||||||||  |    
T  19961684 agttcgctcgagcgaaccgcaagcgaaccgtgagcgagcgagaatccaaacttcctgta-gctggtcgcttaagcgagctacccttcgcttaagcgagat 19961586  T
Q  148 ggaccttagtcagccactttctgaactttgctttgtgca 186  Q
    |  |||||||||||| || |||||||||||||| |||||    
T  19961585 gagccttagtcagcctctatctgaactttgcttcgtgca 19961547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 412 - 467
Target Start/End: Complemental strand, 23631200 - 23631145
Alignment:
Q  412 ggagtagtaagtcatatgaaatatatgtgtagttaagttgtatgtagatatacaca 467  Q
    ||||| ||||||||||| | |||||||  | |||||||||||||||||||||||||    
T  23631200 ggagttgtaagtcatattatatatatgcattgttaagttgtatgtagatatacaca 23631145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 467
Target Start/End: Original strand, 20941789 - 20941846
Alignment:
Q  411 cggagtagtaagtcatatgaaat-atatgtgtagttaagttgtatgtagatatacaca 467  Q
    |||||| |||||||||||||||  |||||  | |||||||||||||||||||||||||    
T  20941789 cggagttgtaagtcatatgaaaacatatgcattgttaagttgtatgtagatatacaca 20941846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: scaffold1773
Description:

Target: scaffold1773; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 644 - 452
Alignment:
Q  18 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgct 117  Q
    ||||||||||||||||||||||||||||  |||||||||||| |||||||||||| | |||||||||| ||||||||| || |||||||||| |||||||    
T  644 gtgagcgaaaaaccattttgattctgtccaaagttcgctcaatcgaaccgtgagcgacccgtaagcgaactgaacccagacctactgtaagctggtcgct 545  T
Q  118 caagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaact-ttgctttgtgcattgaggggaccttttgagcattcta 211  Q
     ||||||||||||||||||||||||||||||   |||||||||||  |||||||||| || ||| ||||| ||||||||| | ||||||||||||    
T  544 taagcgaactagccgtcgcttaagcgaagtgagtcttagtcagcc-ttttctgaactattacttagtgca-tgaggggacttcttgagcattcta 452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 354 - 471
Target Start/End: Complemental strand, 269 - 153
Alignment:
Q  354 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 452  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||| ||  | | ||||||||||||||||||||||||||||  ||||| ||||||    
T  269 attgatgtgtgtgcataattataaataattgtgtatgttctggattgtt-gagctgt-ggagtagtaagtcatatgaaatatatgtaatagttgagttgt 172  T
Q  453 atgtagatatacacaggtt 471  Q
    |||||||||||||||||||    
T  171 atgtagatatacacaggtt 153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 4e-48; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 15 - 211
Target Start/End: Original strand, 8046420 - 8046616
Alignment:
Q  15 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtc 114  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| | |||||||||| ||||||||| || |||| ||||  ||||    
T  8046420 cctgtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactataagttggtc 8046519  T
Q  115 gctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaact-ttgctttgtgcattgaggggaccttttgagcattcta 211  Q
    ||| |||||| |||| ||||||||||||||||||  ||||||||||||  |||||||||| || ||| ||||| ||||||||| | ||||||||||||    
T  8046520 gcttaagcgagctagacgtcgcttaagcgaagtgagccttagtcagcctttttctgaactgttacttagtgca-tgaggggacttcttgagcattcta 8046616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 15 - 162
Target Start/End: Complemental strand, 53483171 - 53483023
Alignment:
Q  15 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaaccca-aacttactgtaagccggt 113  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| | |||||||||| |||| |||| | | |||||||||| |||    
T  53483171 cctgtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgagcccagagcctactgtaagctggt 53483072  T
Q  114 cgctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagcc 162  Q
    |||| ||||||||| |||||||||||||||||||| |||||||||||||    
T  53483071 cgcttaagcgaacttgccgtcgcttaagcgaagtgaaccttagtcagcc 53483023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 34 - 186
Target Start/End: Complemental strand, 11847614 - 11847462
Alignment:
Q  34 tttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagct-gaacccaaacttactgtaagccggtcgctcaagcgaactagccg 132  Q
    |||||||||| ||  | |||||| ||||||||||||||| | ||||||||||||| ||| |||||||| ||||| |  ||||||| |||||||||| |||    
T  11847614 tttgattctgccaagaattcgcttaagcgaaccgtgagcgacccgtaagcgagctagaatccaaacttcctgta-gttggtcgcttaagcgaactacccg 11847516  T
Q  133 tcgcttaagcgaagtggaccttagtcagccactttctgaactttgctttgtgca 186  Q
    ||||||||||||  ||  |||||||||||| |||||||||||||||||||||||    
T  11847515 tcgcttaagcgagctgagccttagtcagcctctttctgaactttgctttgtgca 11847462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 12 - 178
Target Start/End: Complemental strand, 15407608 - 15407454
Alignment:
Q  12 gaacctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccg 111  Q
    ||||| || ||||||||||||||||||||||| |||||||||||||||||||||||| |||           |||| ||||| | |||| |||| |||||    
T  15407608 gaacccgtaagcgaaaaaccattttgattctgccagaagttcgctcaagcgaaccgtcagc-----------gagcggaacctagactttctgtgagccg 15407520  T
Q  112 gtcgctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaactttgc 178  Q
    |||||| ||||||||| ||||||||||||||||||  |||| |||||||||||||| ||||||||||    
T  15407519 gtcgcttaagcgaactggccgtcgcttaagcgaagatgaccatagtcagccacttt-tgaactttgc 15407454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 34 - 204
Target Start/End: Original strand, 16147376 - 16147546
Alignment:
Q  34 tttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgt 133  Q
    |||||||||| ||  | |||||| |||||| |||||||| | |||||||||| ||||||||| || |||||||||  ||||||| |||||| ||||||||    
T  16147376 tttgattctgccaagaattcgcttaagcgagccgtgagcgacccgtaagcgaactgaacccagacctactgtaagatggtcgcttaagcgagctagccgt 16147475  T
Q  134 cgcttaagcgaagtggaccttagtcagccactttctgaactttgctttgtgcattgaggggaccttttgag 204  Q
    |||||||||||| ||    ||||||||||  ||||||||| |||||| ||||| | ||||  |||||||||    
T  16147476 cgcttaagcgaactgagtgttagtcagcctttttctgaaccttgcttcgtgcactaagggatccttttgag 16147546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 74 - 165
Target Start/End: Complemental strand, 14486140 - 14486049
Alignment:
Q  74 aaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagccact 165  Q
    |||||| ||||||| |||||||||||  |||||||||||||||| |||||| | |||| ||||||||||||||||  |||||||||||||||    
T  14486140 aaccgtgagcgagcggaacccaaactctctgtaagccggtcgcttaagcgagccagccttcgcttaagcgaagtgagccttagtcagccact 14486049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 354 - 471
Target Start/End: Original strand, 8046777 - 8046893
Alignment:
Q  354 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 452  Q
    |||||||| ||||||||||||||| |||||||||||| | ||||||  | || || | ||||||||||||||||||||||||||||  ||||  ||||||    
T  8046777 attgatgtgtgtgcataattataaataattgtgtatgatttggattact-gagttgt-ggagtagtaagtcatatgaaatatatgtaatagtcgagttgt 8046874  T
Q  453 atgtagatatacacaggtt 471  Q
    |||||||||||||||||||    
T  8046875 atgtagatatacacaggtt 8046893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 40 - 186
Target Start/End: Complemental strand, 13887289 - 13887144
Alignment:
Q  40 tctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgctta 139  Q
    ||||||||||||| ||| |||||||||||| || |||| | ||||||| |||| | ||||  |||||||||||||| | |||||| | ||||||||||||    
T  13887289 tctgtcagaagtttgcttaagcgaaccgtgcgcgaaccattagcgagcagaacgccaactctctgtaagccggtcgtttaagcgagccagccgtcgctta 13887190  T
Q  140 agcgaagtggaccttagtcagccactttctgaactttgctttgtgca 186  Q
    |||||||  |  |||||| ||||||||| |||| ||||||| |||||    
T  13887189 agcgaagaaggtcttagttagccacttt-tgaattttgcttcgtgca 13887144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 40 - 186
Target Start/End: Complemental strand, 13888146 - 13888001
Alignment:
Q  40 tctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgctta 139  Q
    ||||||||||||| ||| |||||||||||| || |||| | ||||||| |||| | ||||  |||||||||||||| | |||||| | ||||||||||||    
T  13888146 tctgtcagaagtttgcttaagcgaaccgtgcgcgaaccattagcgagcagaacgccaactctctgtaagccggtcgtttaagcgagccagccgtcgctta 13888047  T
Q  140 agcgaagtggaccttagtcagccactttctgaactttgctttgtgca 186  Q
    |||||||  |  |||||| ||||||||| |||| ||||||| |||||    
T  13888046 agcgaagaaggtcttagttagccacttt-tgaattttgcttcgtgca 13888001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 345 - 402
Target Start/End: Original strand, 14555881 - 14555938
Alignment:
Q  345 ttgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 402  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  14555881 ttgaatgaaattgatgtatgagcataattataattaattgtgtttgttctggattgtt 14555938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 40 - 172
Target Start/End: Complemental strand, 15244719 - 15244587
Alignment:
Q  40 tctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgctta 139  Q
    ||||||||||||||||| ||||||||||||||| | || | ||||||| |||| | ||||  |||||||||||||||| ||||||   | ||||||||||    
T  15244719 tctgtcagaagttcgcttaagcgaaccgtgagcgagccattagcgagcggaacgccaactctctgtaagccggtcgcttaagcgagtcaaccgtcgctta 15244620  T
Q  140 agcgaagtggaccttagtcagccactttctgaa 172  Q
    | |||||  |  |||||||||||||||| ||||    
T  15244619 atcgaagaaggtcttagtcagccactttttgaa 15244587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 44 - 167
Target Start/End: Complemental strand, 15307620 - 15307497
Alignment:
Q  44 tcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcg 143  Q
    ||||||||||||| ||||||||||||||| | || | ||||||| |||| | ||||  ||||||| |||||||| |||||| | |||| |||||||||||    
T  15307620 tcagaagttcgcttaagcgaaccgtgagcgagccattagcgagcggaacgccaactctctgtaagtcggtcgcttaagcgagccagccatcgcttaagcg 15307521  T
Q  144 aagtggaccttagtcagccacttt 167  Q
    |||  |  ||||||||||||||||    
T  15307520 aagaaggtcttagtcagccacttt 15307497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 245
Target Start/End: Complemental strand, 8834385 - 8834185
Alignment:
Q  45 cagaagttcgctcaagcgaaccgtgagcaaaccg-taagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcg 143  Q
    |||||||| |||  |||||||||||||| ||||  | ||||||| |||| | ||||  |||||||||||||||| || | | | |||| |||||||||||    
T  8834385 cagaagtttgcttgagcgaaccgtgagcgaaccccttagcgagcagaacaccaactctctgtaagccggtcgcttaa-caagccagccttcgcttaagcg 8834287  T
Q  144 aagtggaccttagtcagccactttctgaactttgctttgtgcattgagggga-ccttttgagcattctaaaatatctctttcaacttatataatccttgt 242  Q
    |||  |  |||||||||||||||| |||  |||||||  |||| | || | | |||||||||| ||||||||| | ||||||||||| ||||| | ||||    
T  8834286 aagaaggtcttagtcagccactttttgatttttgcttcatgcact-agagaatccttttgagcgttctaaaatgtttctttcaacttgtataacctttgt 8834188  T
Q  243 ata 245  Q
    |||    
T  8834187 ata 8834185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 196 - 249
Target Start/End: Complemental strand, 14486041 - 14485988
Alignment:
Q  196 ccttttgagcattctaaaatatctctttcaacttatataatccttgtataggta 249  Q
    |||||||||||||||||||| | ||||||| ||| ||||| |||||||||||||    
T  14486041 ccttttgagcattctaaaatgtttctttcagcttgtataacccttgtataggta 14485988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 394
Target Start/End: Complemental strand, 18212615 - 18212523
Alignment:
Q  302 tttggagatgactgagtatgaaatcaagtgattatatattacattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttct 394  Q
    ||||||||||| ||||||||||| |||||||  ||||| ||  ||||||||| |||||| ||  |  | ||||| ||||||||||||| ||||    
T  18212615 tttggagatgattgagtatgaaaccaagtgaacatatactatgttgaatgaacttgatgcattagtttgattatgattaattgtgtattttct 18212523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 96; Significance: 7e-47; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 15 - 188
Target Start/End: Complemental strand, 10829 - 10667
Alignment:
Q  15 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtc 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |           |||||||| ||||||| ||||||||||||||||||    
T  10829 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccct-----------aagcgagcagaacccagacttactgtaagccggtc 10741  T
Q  115 gctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaactttgctttgtgcatt 188  Q
    ||| |||||| |||||||||||||||||||||| || |||||||||||||||| |||||||||| | |||||||    
T  10740 gcttaagcgagctagccgtcgcttaagcgaagttgatcttagtcagccactttttgaactttgcctcgtgcatt 10667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 3e-46; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 23866078 - 23865885
Alignment:
Q  18 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgct 117  Q
    |||| |||||||||||||||||||||||  ||||||||||||||||||||||||| | |||||||||| ||||||||| || |||||||||  |||||||    
T  23866078 gtgatcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgct 23865979  T
Q  118 caagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaact-ttgctttgtgcattgaggggaccttttgagcattcta 211  Q
     |||||| |||||||||||||||||||||||   |||||||||||  |||||||||| || ||| ||||| ||||||||| | ||||||||||||    
T  23865978 taagcgagctagccgtcgcttaagcgaagtgagtcttagtcagcctttttctgaactattacttagtgca-tgaggggacttcttgagcattcta 23865885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 15 - 125
Target Start/End: Complemental strand, 17054060 - 17053949
Alignment:
Q  15 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaaccca-aacttactgtaagccggt 113  Q
    |||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||| | |||||||||| ||||||||| ||| |||||||||| |||    
T  17054060 cctgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggt 17053961  T
Q  114 cgctcaagcgaa 125  Q
    |||| |||||||    
T  17053960 cgcttaagcgaa 17053949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 354 - 471
Target Start/End: Original strand, 19902808 - 19902924
Alignment:
Q  354 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 452  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||  || || | |||||| ||||||||||||||||||||| |||||| ||||||    
T  19902808 attgatgtatgtgcatgattataaataattgtgtatgttctggattgtc-gagttgt-ggagtattaagtcatatgaaatatatgtagtagttgagttgt 19902905  T
Q  453 atgtagatatacacaggtt 471  Q
    |||||||||||||||||||    
T  19902906 atgtagatatacacaggtt 19902924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 12 - 178
Target Start/End: Original strand, 14057148 - 14057302
Alignment:
Q  12 gaacctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccg 111  Q
    ||||| ||||| |||||||||||||||||||| || ||||||||||||||||||||| |||           |||| ||||||| |||| |||| |||||    
T  14057148 gaacccgtgagtgaaaaaccattttgattctgccataagttcgctcaagcgaaccgtcagc-----------gagcggaacccagactttctgtgagccg 14057236  T
Q  112 gtcgctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaactttgc 178  Q
    |||||| |||||| |||||||||||||||||||||  ||||||| ||||||||||| ||||||||||    
T  14057237 gtcgcttaagcgagctagccgtcgcttaagcgaagatgaccttaatcagccacttt-tgaactttgc 14057302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 12 - 178
Target Start/End: Complemental strand, 25111508 - 25111354
Alignment:
Q  12 gaacctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccg 111  Q
    ||||| || ||||||||||||||||||||||| |||||||||||||||||||||||| |||           |||| ||||||| |||| |||| || ||    
T  25111508 gaacccgtaagcgaaaaaccattttgattctgccagaagttcgctcaagcgaaccgtcagc-----------gagcggaacccagactttctgtgagtcg 25111420  T
Q  112 gtcgctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaactttgc 178  Q
    |||||| ||||||||| ||||||||||||||||||  |||| |||||||||||||| ||||||||||    
T  25111419 gtcgcttaagcgaactggccgtcgcttaagcgaagatgaccatagtcagccacttt-tgaactttgc 25111354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 354 - 471
Target Start/End: Complemental strand, 23865732 - 23865615
Alignment:
Q  354 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtc-atatgaaatatatg-tgtagttaagttg 451  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||   | || |||||||||||||| ||||||||||||||   ||||| |||||    
T  23865732 attgatgtatgtgcataattataaataattgtgtatgttctgaattgtt--gagttacggagtagtaagtcaatatgaaatatatgcattagttgagttg 23865635  T
Q  452 tatgtagatatacacaggtt 471  Q
    ||||||||||||||||||||    
T  23865634 tatgtagatatacacaggtt 23865615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 34 - 145
Target Start/End: Original strand, 24321216 - 24321327
Alignment:
Q  34 tttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgt 133  Q
    |||||||||| ||  | |||||| |||||| |||||||| | |||||||||| ||||||||| || |||||||||| ||||||| |||||||||||||||    
T  24321216 tttgattctgccaagaattcgcttaagcgagccgtgagcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgt 24321315  T
Q  134 cgcttaagcgaa 145  Q
    ||||||||||||    
T  24321316 cgcttaagcgaa 24321327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 74 - 235
Target Start/End: Complemental strand, 18613691 - 18613531
Alignment:
Q  74 aaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaac 173  Q
    |||||| ||||||| |||||| ||||  |||||||| ||||||| |||||||| |||||||||||||||||||  |||||||||| |||||||| |||||    
T  18613691 aaccgttagcgagcggaaccccaactctctgtaagcaggtcgcttaagcgaaccagccgtcgcttaagcgaagatgaccttagtcggccacttt-tgaac 18613593  T
Q  174 tttgctttgtgcattgagggga-ccttttgagcattctaaaatatctctttcaacttatataa 235  Q
    ||||| | ||||| | |||||| ||| |||||||||  ||||| |  |||||||||| |||||    
T  18613592 tttgcctcgtgcact-aggggatcctcttgagcatttaaaaatgttcctttcaacttgtataa 18613531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 345 - 400
Target Start/End: Original strand, 19987990 - 19988045
Alignment:
Q  345 ttgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattg 400  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  19987990 ttgaatgaaattgatgtatgagcataattgtaattaattgtgtatgttctggattg 19988045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 396
Target Start/End: Original strand, 20005423 - 20005473
Alignment:
Q  346 tgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctgg 396  Q
    |||||||| ||||||||||||||| ||||| ||| ||||||||| ||||||    
T  20005423 tgaatgaacttgatgtatgtgcatgattatgattgattgtgtattttctgg 20005473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 467
Target Start/End: Original strand, 20005563 - 20005612
Alignment:
Q  418 gtaagtcatatgaaatatatgtgtagttaagttgtatgtagatatacaca 467  Q
    ||||||||||| | |||||||  | |||||||||||||||||||||||||    
T  20005563 gtaagtcatattatatatatgcattgttaagttgtatgtagatatacaca 20005612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 379 - 470
Target Start/End: Complemental strand, 17053870 - 17053780
Alignment:
Q  379 taattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgtatgtagatatacacaggt 470  Q
    |||||||||| || |||||||||| || || | ||||||||| ||||||||| | |||||| || ||  ||||||||||||||||||||||||    
T  17053870 taattgtgtaagt-ctggattgtttgagttgt-ggagtagtatgtcatatgatacatatgtagtggtcgagttgtatgtagatatacacaggt 17053780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 12 - 235
Target Start/End: Complemental strand, 888 - 665
Alignment:
Q  12 gaacctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccg 111  Q
    ||||| || ||||||||| |||||  ||||||||||||||||||| ||||||||||  ||| || ||| ||||||   ||||| ||||  ||||||||||    
T  888 gaacccgtaagcgaaaaatcatttccattctgtcagaagttcgcttaagcgaaccgcaagcgaaacgttagcgagggaaaccccaactctctgtaagccg 789  T
Q  112 gtcgctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaactttgctttgtgcattgagggga-ccttttgagcattct 210  Q
    |||||| |||||||| |||||||||||||||||||  ||||||||||||||||||| |||||||||| | ||||||| |||||| |||||||||||||      
T  788 gtcgcttaagcgaaccagccgtcgcttaagcgaagatgaccttagtcagccactttttgaactttgcctcgtgcatt-aggggatccttttgagcattaa 690  T
Q  211 aaaatatctctttcaacttatataa 235  Q
    ||||| | |||||||| || |||||    
T  689 aaaatgtttctttcaatttgtataa 665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 85
Target Start/End: Complemental strand, 923 - 875
Alignment:
Q  38 attctgtcagaagttcgctcaagcgaaccgtgagc-aaaccgtaagcga 85  Q
    ||||||||||| | ||||||||||||||||||||| || ||||||||||    
T  923 attctgtcagacgctcgctcaagcgaaccgtgagcgaacccgtaagcga 875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 15 - 297
Target Start/End: Complemental strand, 504 - 243
Alignment:
Q  15 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtc 114  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||  | | |||| ||||||||| ||||||| |||| ||||||||| |||    
T  504 cctgtgagcgaaaaaccattttgattctgtcagaagttcgcttaagcgaaccgcaaacgaaccctaagcgagcagaacccagactttctgtaagccagtc 405  T
Q  115 gctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaactttgctttgtgcattgaggggaccttttgagcattctaaaa 214  Q
    ||                    |||||||||||| ||||||||||||| ||||||||| ||||||| |||||   ||||||| | |||||||||||||||    
T  404 gc--------------------ttaagcgaagtgaaccttagtcagcctctttctgaattttgcttcgtgcaca-aggggacatcttgagcattctaaaa 326  T
Q  215 tatctctttcaacttatataatccttgtataggtagcagaaccctacta-aacgctctgatgatcgaatttggttgatgttagt 297  Q
    ||| ||||||||||| ||||| | ||||||||||| ||||| ||||||| ||| | ||| |||||||| |||||||||||||||    
T  325 tatttctttcaacttgtataaactttgtataggtatcagaatcctactagaacacgctggtgatcgaa-ttggttgatgttagt 243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 15 - 297
Target Start/End: Complemental strand, 7649 - 7388
Alignment:
Q  15 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtc 114  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||  | | |||| ||||||||| ||||||| |||| ||||||||| |||    
T  7649 cctgtgagcgaaaaaccattttgattctgtcagaagttcgcttaagcgaaccgcaaacgaaccctaagcgagcagaacccagactttctgtaagccagtc 7550  T
Q  115 gctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaactttgctttgtgcattgaggggaccttttgagcattctaaaa 214  Q
    ||                    |||||||||||| ||||||||||||| ||||||||| ||||||| |||||   ||||||| | |||||||||||||||    
T  7549 gc--------------------ttaagcgaagtgaaccttagtcagcctctttctgaattttgcttcgtgcaca-aggggacatcttgagcattctaaaa 7471  T
Q  215 tatctctttcaacttatataatccttgtataggtagcagaaccctacta-aacgctctgatgatcgaatttggttgatgttagt 297  Q
    ||| ||||||||||| ||||| | ||||||||||| ||||| ||||||| ||| | ||| |||||||| |||||||||||||||    
T  7470 tatttctttcaacttgtataaactttgtataggtatcagaatcctactagaacacgctggtgatcgaa-ttggttgatgttagt 7388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 12 - 229
Target Start/End: Complemental strand, 16303 - 16086
Alignment:
Q  12 gaacctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccg 111  Q
    ||||| || ||||||||| || ||| ||| ||||||||||||||| || |||||||  ||| |||||| ||||||| |||||| ||||| ||||||||||    
T  16303 gaacccgtaagcgaaaaatcaatttcattatgtcagaagttcgcttaaccgaaccgcaagcgaaccgttagcgagcggaaccccaactttctgtaagccg 16204  T
Q  112 gtcgctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaactttgctttgtgcattgagggga-ccttttgagcattct 210  Q
    |||||| |||||| ||| |||||||||||||||||  ||||||||||||||||||| |||||||||| | ||||| | |||||| ||||||||||||| |    
T  16203 gtcgcttaagcgagctaaccgtcgcttaagcgaagatgaccttagtcagccactttttgaactttgcctcgtgcact-aggggatccttttgagcatttt 16105  T
Q  211 aaaatatctctttcaactt 229  Q
     |||| |  ||||||||||    
T  16104 taaatgttcctttcaactt 16086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 86; Significance: 6e-41; HSPs: 2)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 9167 - 9358
Alignment:
Q  18 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgct 117  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||| | || ||||||| ||||||||| || |||||||||  |||||||    
T  9167 gtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccataagcgaactgaacccagacctactgtaagttggtcgct 9266  T
Q  118 caagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaac-tttgctttgtgcattgaggggaccttttgagcattct 210  Q
     |||||| |||||||||||||||||||||||   |||||||||||  ||||| ||| ||| ||| ||||| ||||||||| | |||||||||||    
T  9267 taagcgagctagccgtcgcttaagcgaagtgagtcttagtcagcc-ttttctaaacttttacttagtgca-tgaggggacttcttgagcattct 9358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 354 - 471
Target Start/End: Original strand, 9512 - 9628
Alignment:
Q  354 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 452  Q
    |||||||||||||||| ||||||| ||||||| |||||||||||||||  || || | |||||| ||||||||||||||||||||| |||||| ||||||    
T  9512 attgatgtatgtgcatgattataaataattgtatatgttctggattgtc-gagttgt-ggagtattaagtcatatgaaatatatgtagtagttgagttgt 9609  T
Q  453 atgtagatatacacaggtt 471  Q
    |||||||||||||||||||    
T  9610 atgtagatatacacaggtt 9628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 74 - 249
Target Start/End: Complemental strand, 30370 - 30195
Alignment:
Q  74 aaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaac 173  Q
    |||||| |||||||  |||| |||||| |||||||||||||||| |||||| | | || ||||||||||||||||  ||||||||||||||||||||||     
T  30370 aaccgtgagcgagcgaaacctaaactttctgtaagccggtcgcttaagcgagccaaccttcgcttaagcgaagtgagccttagtcagccactttctgaat 30271  T
Q  174 tttgctttgtgcattgaggggacc-ttttgagcattctaaaatatctctttcaacttatataatccttgtataggta 249  Q
    ||||||| ||||| | |||||||| |||||||||||||||||| | ||||||||||| ||||| |||||||||||||    
T  30270 tttgcttcgtgcact-aggggacccttttgagcattctaaaatgtttctttcaacttgtataacccttgtataggta 30195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 78; Significance: 4e-36; HSPs: 3)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 18 - 471
Target Start/End: Complemental strand, 111378 - 110939
Alignment:
Q  18 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgct 117  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||| | |||||||||| ||||||||| || |||||||||  ||||||     
T  111378 gtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccatacctactgtaagttggtcgc- 111280  T
Q  118 caagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaact-ttgctttgtgcattgaggggaccttttgagcattctaaaata 216  Q
                       ||||||||||||   |||||||||||  |||||||||| || ||| |||||| |||||||| | |||||||||||| |||     
T  111279 -------------------ttaagcgaagtgagtcttagtcagcct-tttctgaactattacttagtgcat-gaggggacttcttgagcattctataatt 111201  T
Q  217 tctctttcaacttatataatccttgtataggtagcagaaccctacta-aacgctctgatgatcgaatttggttgatgttagtaaattttggagatgactg 315  Q
    |||| || ||||  ||||| ||| || |||||| | ||| |||| || |||   | | |||| | ||| | ||| ||||||||||| |||||||||| ||    
T  111200 tctcctttaactagtataaccctggtgtaggtaactgaatcctattagaacaagccggtgattggatt-gattggtgttagtaaatgttggagatgattg 111102  T
Q  316 agtatgaaatcaagtgattat------atattacatt--gaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgttagaat 407  Q
     |||||||| ||||||| |||      |||| ||||   |||||  |||||||||||||| ||||||||| |||||||||| ||||||||||||  || |    
T  111101 tgtatgaaaacaagtgaatatgtatatatataacatgtggaatgtgattgatgtatgtgcgtaattataaataattgtgtaggttctggattgtc-gagt 111003  T
Q  408 tttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgtatgtagatatacacaggtt 471  Q
    | | ||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||||    
T  111002 tgt-ggagtagtaagtcatatgaaatatatgtaatagttgagttgtatgtagatatacacaggtt 110939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 34 - 145
Target Start/End: Original strand, 91747 - 91858
Alignment:
Q  34 tttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgt 133  Q
    ||||||||||||  |||||||| |||||||||||||||| | |||||||||| ||||||||| || |||||||||  ||||||| |||||| ||||||||    
T  91747 tttgattctgtccaaagttcgcccaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaagcgagctagccgt 91846  T
Q  134 cgcttaagcgaa 145  Q
    ||||||||||||    
T  91847 cgcttaagcgaa 91858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 34 - 145
Target Start/End: Original strand, 97473 - 97584
Alignment:
Q  34 tttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgt 133  Q
    ||||||||||||  |||||||| |||||||||||||||| | |||||||||| ||||||||| || |||||||||  ||||||| |||||| ||||||||    
T  97473 tttgattctgtccaaagttcgcccaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaagcgagctagccgt 97572  T
Q  134 cgcttaagcgaa 145  Q
    ||||||||||||    
T  97573 cgcttaagcgaa 97584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 76; Significance: 6e-35; HSPs: 2)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 12 - 208
Target Start/End: Original strand, 581 - 766
Alignment:
Q  12 gaacctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccg 111  Q
    ||||| || ||||||||| || ||| ||||||||||||||||||||||||||||||| |||           ||||  ||||| ||||| ||||||||||    
T  581 gaacccgtaagcgaaaaatcaatttcattctgtcagaagttcgctcaagcgaaccgtcagc-----------gagcgaaaccccaactttctgtaagccg 669  T
Q  112 gtcgctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaactttgctttgtgcattgagggga-ccttttgagcatt 208  Q
    |||||| ||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||| | ||||| | |||||| |||||||||||||    
T  670 gtcgcttaagcgaactagccgtcgcttaagcgaagatgaccttagtcagccactttttgaactttgcgtcgtgcact-aggggatccttttgagcatt 766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 111 - 208
Target Start/End: Original strand, 7605 - 7702
Alignment:
Q  111 ggtcgctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaactttgctttgtgcattgagggga-ccttttgagcatt 208  Q
    ||||||| ||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||| | ||||| | |||||| |||||||||||||    
T  7605 ggtcgcttaagcgaactagccgtcgcttaagcgaagatgaccttagtcagccactttttgaactttgcgtcgtgcact-aggggatccttttgagcatt 7702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0476 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0476
Description:

Target: scaffold0476; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 51 - 208
Target Start/End: Original strand, 3854 - 4011
Alignment:
Q  51 ttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcgaagtgga 150  Q
    |||||| ||||||||||  ||| ||||||||  |||| ||||||| ||| ||||||||||||||||| ||||||||||| ||||||||||||||||| ||    
T  3854 ttcgcttaagcgaaccgcaagcgaaccgtaattgagcagaacccagactcactgtaagccggtcgcttaagcgaactagacgtcgcttaagcgaagttga 3953  T
Q  151 ccttagtcagccactttctgaactttgctttgtgcattgagggga-ccttttgagcatt 208  Q
    ||||||||||||||||| ||||| |||| | ||||||| ||| || |||||||||||||    
T  3954 ccttagtcagccactttttgaacgttgcctcgtgcatt-aggagacccttttgagcatt 4011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 292 - 402
Target Start/End: Original strand, 7557 - 7667
Alignment:
Q  292 gttagtaaattttggagatgactgagtatgaaatcaagtgattatatattacattgaatgaaattgatgtatgtgcataattataattaattgtgtatgt 391  Q
    |||||| |||||||||||||| ||||||||||||||||||| |||||| ||  |||||||||||||||||||| ||||||||||||||||||| ||||||    
T  7557 gttagtgaattttggagatgattgagtatgaaatcaagtgaatatatagtatgttgaatgaaattgatgtatgagcataattataattaattgggtatgt 7656  T
Q  392 tctggattgtt 402  Q
    ||||| |||||    
T  7657 tctgggttgtt 7667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 411 - 467
Target Start/End: Original strand, 7742 - 7798
Alignment:
Q  411 cggagtagtaagtcatatgaaatatatgtgtagttaagttgtatgtagatatacaca 467  Q
    |||||| | ||||||||||||| |||||  | |||||||||||||||||||||||||    
T  7742 cggagttgcaagtcatatgaaacatatgcattgttaagttgtatgtagatatacaca 7798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0232 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0232
Description:

Target: scaffold0232; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 40 - 245
Target Start/End: Original strand, 18961 - 19166
Alignment:
Q  40 tctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgctta 139  Q
    ||||||||||||||||| ||||||||||||||| | || | ||||||| |||||| ||||  |||| |||| |||||| || ||| | ||||||| | ||    
T  18961 tctgtcagaagttcgcttaagcgaaccgtgagcgagccattagcgagcggaaccccaactgtctgtgagccagtcgcttaaccgagccagccgtctccta 19060  T
Q  140 agcgaagtggaccttagtcagccactttctgaactttgctttgtgcattgagggga-ccttttgagcattctaaaatatctctttcaacttatataatcc 238  Q
    ||||||| ||  |||||||||||||||| |||| ||||||| ||||| | |||||| ||||||||||||| |||||| | ||||||||||||||||| |     
T  19061 agcgaagagggtcttagtcagccactttttgaattttgcttcgtgcact-aggggatccttttgagcattttaaaatgtttctttcaacttatataacct 19159  T
Q  239 ttgtata 245  Q
    |||||||    
T  19160 ttgtata 19166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 40 - 245
Target Start/End: Complemental strand, 1322 - 1117
Alignment:
Q  40 tctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgctta 139  Q
    ||||||||||||||||| |||||||||||||   | || | ||||||| ||| || ||||  |||| ||||||||||| |||||| | ||||||||||||    
T  1322 tctgtcagaagttcgcttaagcgaaccgtgattgagccattagcgagcggaaacccaactctctgtgagccggtcgcttaagcgagccagccgtcgctta 1223  T
Q  140 agcgaagtggaccttagtcagccactttctgaactttgctttgtgcattgagggga-ccttttgagcattctaaaatatctctttcaacttatataatcc 238  Q
    ||||||| ||  |||||||||||||||| |||| ||||||| ||||| | |||||| ||||||||||||| |||||| | ||||||||||| ||||| |     
T  1222 agcgaagagggtcttagtcagccactttttgaattttgcttcgtgcact-aggggatccttttgagcattttaaaatgtttctttcaacttgtataacct 1124  T
Q  239 ttgtata 245  Q
    |||||||    
T  1123 ttgtata 1117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 74; Significance: 9e-34; HSPs: 2)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 39 - 358
Target Start/End: Original strand, 81764 - 82082
Alignment:
Q  39 ttctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgctt 138  Q
    ||||| |||||||||||| ||||||||||| ||| ||| || |||||||  ||||  ||||  ||||||| |||||||| |||||| | |||||||||||    
T  81764 ttctgccagaagttcgcttaagcgaaccgtaagcgaactgttagcgagcgaaacctcaactctctgtaagtcggtcgcttaagcgagccagccgtcgctt 81863  T
Q  139 aagcgaagtggaccttagtcagccactttctgaactttgctttgtgcattgagggga-ccttttgagcattctaaaatatctctttcaacttatataatc 237  Q
    ||||||||| |  |||||||||||||||| |||| ||||||| || ||   |||| | ||||||||||||| |||||| | ||||||||||| ||||| |    
T  81864 aagcgaagtaggtcttagtcagccactttttgaattttgcttcgtaca-ccagggaatccttttgagcattttaaaatgtttctttcaacttgtataacc 81962  T
Q  238 cttgtataggtagcagaaccctac-taaacgctctgatgatcgaatttggttgatgttagtaaattttggagatgactgagtatgaaatcaagtgattat 336  Q
    |||||||| | | | ||| ||||| ||||| |  || |  ||||| ||||||||  ||||| ||||||||| |||  ||||||||||| ||||||| |||    
T  81963 cttgtatatgca-ctgaatcctacttaaacacattggtagtcgaa-ttggttgaatttagtgaattttggatatgtttgagtatgaaaccaagtgaatat 82060  T
Q  337 atattacattgaatgaaattga 358  Q
    ||||||  ||||||||| ||||    
T  82061 atattatgttgaatgaacttga 82082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 34 - 204
Target Start/End: Original strand, 80036 - 80206
Alignment:
Q  34 tttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgt 133  Q
    |||||||||| ||  | |||||| |||||| |||||||| | |||||||||| ||||||||| || |||||||||  ||||||| |||||| ||||||||    
T  80036 tttgattctgccaagaattcgcttaagcgagccgtgagcgacccgtaagcgaactgaacccagacctactgtaagatggtcgcttaagcgagctagccgt 80135  T
Q  134 cgcttaagcgaagtggaccttagtcagccactttctgaactttgctttgtgcattgaggggaccttttgag 204  Q
    |||||||||||| ||    ||||||||||  ||||||||| |||||| ||||| | ||||  |||||||||    
T  80136 cgcttaagcgaactgagtgttagtcagcctttttctgaaccttgcttcgtgcactaagggatccttttgag 80206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 12 - 177
Target Start/End: Original strand, 34861 - 35015
Alignment:
Q  12 gaacctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccg 111  Q
    ||||| || ||||||||| || ||| ||||||||||||||||||||||||||||||| |||           |||| |||||  ||||| ||||||||||    
T  34861 gaacccgtaagcgaaaaatcaatttcattctgtcagaagttcgctcaagcgaaccgtcagc-----------gagcggaacctcaactttctgtaagccg 34949  T
Q  112 gtcgctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaactttg 177  Q
    |||||| ||||||||||||| ||||||||||||||  ||||||||||||||||||| |||||||||    
T  34950 gtcgcttaagcgaactagccatcgcttaagcgaagatgaccttagtcagccactttttgaactttg 35015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0310 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: scaffold0310
Description:

Target: scaffold0310; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 77 - 178
Target Start/End: Complemental strand, 6976 - 6876
Alignment:
Q  77 cgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaacttt 176  Q
    ||||||||||| ||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||  ||||| ||||||||||||| ||||||||    
T  6976 cgtaagcgagcagaacccagacttactgtaagccggtcgcttaagcgagctagccgtcgcttaagcgaagatgacctcagtcagccacttt-tgaacttt 6878  T
Q  177 gc 178  Q
    ||    
T  6877 gc 6876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0924 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: scaffold0924
Description:

Target: scaffold0924; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 1343 - 1442
Alignment:
Q  18 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgct 117  Q
    ||||||||||||| ||||||||||||||  ||||||||||||||||||||||||| | |||||||||| ||||||||| || |||||||||| |||||||    
T  1343 gtgagcgaaaaacaattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactgtaagctggtcgct 1442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 74 - 208
Target Start/End: Original strand, 4195 - 4329
Alignment:
Q  74 aaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaac 173  Q
    |||||||| ||||| ||||||| ||||||||||||| | ||||| ||||||||||| ||||||||||||||||| |||||||||||| |||||  |||||    
T  4195 aaccgtaatcgagcagaacccagacttactgtaagctgatcgcttaagcgaactagacgtcgcttaagcgaagttgaccttagtcagtcacttcttgaac 4294  T
Q  174 tttgctttgtgcattgaggggaccttttgagcatt 208  Q
     |||| | |||||||  | | ||||||||||||||    
T  4295 gttgcctcgtgcattaggagaaccttttgagcatt 4329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 350 - 402
Target Start/End: Original strand, 17972 - 18024
Alignment:
Q  350 tgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 402  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  17972 tgaaattgatgtatgagcataattataattaattgtgtatgttctggattgtt 18024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 350 - 402
Target Start/End: Original strand, 23605 - 23657
Alignment:
Q  350 tgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 402  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  23605 tgaaattgatgtatgagcataattataattaattgtgtatgttctggattgtt 23657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 74 - 235
Target Start/End: Complemental strand, 65575 - 65414
Alignment:
Q  74 aaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaac 173  Q
    |||||| ||||||| |||||| ||||  |||||||||||||||| |||||||| ||||||| |||||||| ||  ||||||||||||||||||| ||||     
T  65575 aaccgttagcgagcggaaccccaactctctgtaagccggtcgcttaagcgaaccagccgtcacttaagcggagaagaccttagtcagccactttttgaat 65476  T
Q  174 tttgctttgtgcattgagggga-ccttttgagcattctaaaatatctctttcaacttatataa 235  Q
    ||||| | ||||| | |||||| |||||||| |||| |||||| | ||||||||||| |||||    
T  65475 tttgcctcgtgcact-aggggatccttttgaacattttaaaatgtttctttcaacttgtataa 65414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 40 - 167
Target Start/End: Complemental strand, 1572 - 1445
Alignment:
Q  40 tctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgctta 139  Q
    |||||||||||||| || ||||||||||||||| | ||   ||||||| |||||| ||||  |||| ||||||||||| |||||| | |||| |||||||    
T  1572 tctgtcagaagttcacttaagcgaaccgtgagcgagccagtagcgagcggaaccccaactctctgtcagccggtcgcttaagcgagccagccttcgctta 1473  T
Q  140 agcgaagtggaccttagtcagccacttt 167  Q
    ||||||   |  ||||||||||||||||    
T  1472 agcgaacaaggtcttagtcagccacttt 1445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 293 - 385
Target Start/End: Complemental strand, 65357 - 65265
Alignment:
Q  293 ttagtaaattttggagatgactgagtatgaaatcaagtgattatatattacattgaatgaaattgatgtatgtgcataattataattaattgt 385  Q
    ||||| |||||||||  ||| ||||||||||| ||||||| |||||| ||  ||||||||| |||||| ||  | || ||||| |||||||||    
T  65357 ttagtgaattttggatttgattgagtatgaaaccaagtgaatatatactatgttgaatgaacttgatgcattagtatgattattattaattgt 65265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 50 - 214
Target Start/End: Complemental strand, 17661 - 17497
Alignment:
Q  50 gttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcgaagtgg 149  Q
    ||||||||||| || |||  ||| ||| || |||||||  ||||||||||| |||||||||||||||| |||||| | |||| ||||||||||||||||     
T  17661 gttcgctcaagagacccgcaagcgaactgtgagcgagcgaaacccaaactttctgtaagccggtcgcttaagcgagccagccttcgcttaagcgaagtga 17562  T
Q  150 accttagtcagccactttctgaactttgctttgtgcattgagggga-ccttttgagcattctaaaa 214  Q
     |||| ||||||||||||||||| |||| || ||||| | ||| || |||||||||||||||||||    
T  17561 gccttggtcagccactttctgaattttgtttcgtgcact-aggcgagccttttgagcattctaaaa 17497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: scaffold0235
Description:

Target: scaffold0235; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 25 - 178
Target Start/End: Original strand, 23192 - 23334
Alignment:
Q  25 aaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcga 124  Q
    |||||||||||| |||||| |||||||||||||||||||||||| |||           ||| ||||||| ||||| |||| ||||||| ||  ||||||    
T  23192 aaaaaccattttcattctgccagaagttcgctcaagcgaaccgtcagc-----------gagttgaaccccaactttctgtgagccggttgcctaagcga 23280  T
Q  125 actagccgtcgcttaagcgaagtggaccttagtcagccactttctgaactttgc 178  Q
     |||||||||||||||||||||  ||||||||||||||||||| ||||||||||    
T  23281 gctagccgtcgcttaagcgaagatgaccttagtcagccactttttgaactttgc 23334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 25 - 208
Target Start/End: Original strand, 15475 - 15647
Alignment:
Q  25 aaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcga 124  Q
    |||||||||||| |||||| |||||||||||||||||||||||| |||           |||| |||||| ||||| |||| |||| |||||| ||| ||    
T  15475 aaaaaccattttcattctgccagaagttcgctcaagcgaaccgtcagc-----------gagcggaaccccaactttctgtgagccagtcgcttaagtga 15563  T
Q  125 actagccgtcgcttaagcgaagtggaccttagtcagccactttctgaactttgctttgtgcattgagggga-ccttttgagcatt 208  Q
     |||||| ||||||||||||||  ||||||||||||||||||| |||| ||||| | ||||| | |||||| |||||||||||||    
T  15564 gctagccatcgcttaagcgaagatgaccttagtcagccactttttgaaatttgcctcgtgcact-aggggatccttttgagcatt 15647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 12 - 227
Target Start/End: Complemental strand, 116388 - 116183
Alignment:
Q  12 gaacctgtgagcgaaaaaccattttg-attctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagcc 110  Q
    ||||| || ||||||||| ||||||  ||||||||||||||||||||||||||||||| |||           ||||  || || ||||  |||||||||    
T  116388 gaacccgtaagcgaaaaatcatttttcattctgtcagaagttcgctcaagcgaaccgttagc-----------gagcgaaatcccaactctctgtaagcc 116300  T
Q  111 ggtcgctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaactttgctttgtgcattgagggga-ccttttgagcattc 209  Q
    ||||||| |||||||| |||||||||||||||||||  ||||||||||||||| ||| |||||||||| | ||||| | |||||| ||||||||| |||     
T  116299 ggtcgcttaagcgaaccagccgtcgcttaagcgaagatgaccttagtcagccattttttgaactttgcctcgtgcact-aggggatccttttgagtattt 116201  T
Q  210 taaaatatctctttcaac 227  Q
    |||||| | |||||||||    
T  116200 taaaatgtttctttcaac 116183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 74 - 208
Target Start/End: Original strand, 129221 - 129355
Alignment:
Q  74 aaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaac 173  Q
    |||||| ||||||| |||||| ||||| |||| ||||||||||| |||||| | |||||||||||||||||||  |  |||||||||||||||| ||||     
T  129221 aaccgttagcgagcggaaccccaactttctgtgagccggtcgcttaagcgagccagccgtcgcttaagcgaagaaggtcttagtcagccactttttgaat 129320  T
Q  174 tttgctttgtgcattgagggga-ccttttgagcatt 208  Q
    ||||||| ||||| | |||||| |||||||||||||    
T  129321 tttgcttcgtgcact-aggggatccttttgagcatt 129355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 40 - 235
Target Start/End: Complemental strand, 51749 - 51554
Alignment:
Q  40 tctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgctta 139  Q
    |||| |||||||||||| |||||||||||  || |||||| |||||||  ||||  ||||  || | ||| |||| || |||||| | ||||||||||||    
T  51749 tctgccagaagttcgcttaagcgaaccgtatgcgaaccgttagcgagcgaaacctcaactctctatgagctggtcacttaagcgagccagccgtcgctta 51650  T
Q  140 agcgaagtggaccttagtcagccactttctgaactttgctttgtgcattgagggga-ccttttgagcattctaaaatatctctttcaacttatataa 235  Q
    |||||||  |  |||||||||||||||| |||| ||||||||||||| | |||| | ||||||||||||| |||||| | ||||||||||| |||||    
T  51649 agcgaagaaggtcttagtcagccactttttgaattttgctttgtgcact-agggaatccttttgagcattttaaaatgtttctttcaacttgtataa 51554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 34 - 162
Target Start/End: Original strand, 4217 - 4345
Alignment:
Q  34 tttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgt 133  Q
    |||||||||| ||  | |||||| |||||| |||||||| | |||||||||| ||||||||| || |||||||||| ||||||| ||||||||||||| |    
T  4217 tttgattctgccaagaattcgcttaagcgagccgtgagcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccat 4316  T
Q  134 cgcttaagcgaagtggaccttagtcagcc 162  Q
    |||||||||||| ||  | ||||||||||    
T  4317 cgcttaagcgaactgagcgttagtcagcc 4345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 40 - 245
Target Start/End: Complemental strand, 121406 - 121200
Alignment:
Q  40 tctgtcagaagttcgctcaagcgaaccgtgagcaaaccg-taagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgctt 138  Q
    |||| ||||||||||||  |||||||||||||| ||||  | ||||||| |||| | ||||  |||||||||||| ||| |||||| | |||| ||||||    
T  121406 tctgccagaagttcgcttgagcgaaccgtgagcgaaccccttagcgagcagaacaccaactctctgtaagccggttgcttaagcgagccagccttcgctt 121307  T
Q  139 aagcgaagtggaccttagtcagccactttctgaactttgctttgtgcattgagggga-ccttttgagcattctaaaatatctctttcaacttatataatc 237  Q
    ||||||||  |  |||||||||||||||| |||  ||||||| ||||| | |||| | ||||||||||||| |||||| | ||||||||||| ||||| |    
T  121306 aagcgaagaaggtcttagtcagccactttttgacttttgcttcgtgcact-agggaatccttttgagcattttaaaatgtttctttcaacttgtataacc 121208  T
Q  238 cttgtata 245  Q
     |||||||    
T  121207 tttgtata 121200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 40 - 245
Target Start/End: Complemental strand, 132283 - 132077
Alignment:
Q  40 tctgtcagaagttcgctcaagcgaaccgtgagcaaaccg-taagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgctt 138  Q
    |||| ||||||||||||  |||||||||||||| ||||  | ||||||| |||| | ||||  |||||||||||| ||| |||||| | |||| ||||||    
T  132283 tctgccagaagttcgcttgagcgaaccgtgagcgaaccccttagcgagcagaacaccaactctctgtaagccggttgcttaagcgagccagccttcgctt 132184  T
Q  139 aagcgaagtggaccttagtcagccactttctgaactttgctttgtgcattgagggga-ccttttgagcattctaaaatatctctttcaacttatataatc 237  Q
    ||||||||  |  |||||||||||||||| |||  ||||||| ||||| | |||| | ||||||||||||| |||||| | ||||||||||| ||||| |    
T  132183 aagcgaagaaggtcttagtcagccactttttgacttttgcttcgtgcact-agggaatccttttgagcattttaaaatgtttctttcaacttgtataacc 132085  T
Q  238 cttgtata 245  Q
     |||||||    
T  132084 tttgtata 132077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 235
Target Start/End: Original strand, 15521 - 15733
Alignment:
Q  11 agaacctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagcc 110  Q
    |||||| || ||||||||| |||||  ||| ||||||||||||||||||||||||||| ||| |||       ||    ||||||||||  || |||| |    
T  15521 agaacccgtaagcgaaaaatcatttccattatgtcagaagttcgctcaagcgaaccgttagcgaac-------ga----aacccaaactctctataagac 15609  T
Q  111 ggtcgctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaactttgctttgtgcattgagggga-ccttttgagcattc 209  Q
    ||||||| |||||||| | |||||||||||||||||  ||||||||||||||||||| |||||||||| | ||||| | ||| || |||||||||||||     
T  15610 ggtcgcttaagcgaaccaaccgtcgcttaagcgaagatgaccttagtcagccacttt-tgaactttgcctcgtgcact-aggagatccttttgagcattt 15707  T
Q  210 taaaatatctctttcaacttatataa 235  Q
     ||||| | ||||||||||| |||||    
T  15708 aaaaatgtttctttcaacttgtataa 15733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 74 - 227
Target Start/End: Original strand, 102503 - 102656
Alignment:
Q  74 aaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaac 173  Q
    |||||| ||||||| |||||| ||||| ||||||| |||||||| |||||||| |||| ||||||||||||||  |||||||||| |||||||| |||||    
T  102503 aaccgtcagcgagcggaaccccaactttctgtaagtcggtcgcttaagcgaaccagccatcgcttaagcgaagatgaccttagtcggccactttttgaac 102602  T
Q  174 tttgctttgtgcattgagggga-ccttttgagcattctaaaatatctctttcaac 227  Q
     |||| | ||||| | |||||| ||||||||| ||| |||||  | |||||||||    
T  102603 cttgcctcgtgcact-aggggatccttttgagtattttaaaaggtttctttcaac 102656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 51; Significance: 5e-20; HSPs: 3)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 354 - 471
Target Start/End: Original strand, 174440 - 174557
Alignment:
Q  354 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 452  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| | | || ||||| |||||||||| ||||| ||||||  ||||  | ||||    
T  174440 attgatgtatgtgcataattataaataattgtgtatgttctggattgtttg-agttgcggagcagtaagtcatttgaaaaatatgtaatagtcgaattgt 174538  T
Q  453 atgtagatatacacaggtt 471  Q
    ||||||| ||||| |||||    
T  174539 atgtagagatacaaaggtt 174557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 247
Target Start/End: Original strand, 493588 - 493786
Alignment:
Q  50 gttcgctcaagcgaaccgtgagcaaaccgtaagcgagct-gaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcgaagtg 148  Q
    |||||||||||||||| |||||| |||||| |||||||  |||||  ||| |  |||  || ||||||| |||||| ||| || ||||||||||||| ||    
T  493588 gttcgctcaagcgaactgtgagcgaaccgtgagcgagcgagaacctcaaccttttgtgtgctggtcgcttaagcgagctacccttcgcttaagcgaactg 493687  T
Q  149 gaccttagtcagccactttctgaactttgctttgtgcattgagggga-ccttttgagcattctaaaatatctctttcaacttatataatccttgtatagg 247  Q
      ||||||||||||  ||||||||| |||||| ||||| | |||||| ||||||||| ||| | |||| | ||||| | ||| |||||  ||||||||||    
T  493688 agccttagtcagcctttttctgaaccttgcttcgtgcact-aggggacccttttgagtatttttaaatgtttcttttagcttgtataactcttgtatagg 493786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 164
Target Start/End: Complemental strand, 525204 - 525142
Alignment:
Q  102 ctgtaagccggtcgctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagccac 164  Q
    ||||||| |||||||| |||||||| |||| ||||||||||||||  | |||| |||||||||    
T  525204 ctgtaagacggtcgcttaagcgaaccagccttcgcttaagcgaagaaggccttggtcagccac 525142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0348
Description:

Target: scaffold0348; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 345 - 402
Target Start/End: Original strand, 1527 - 1584
Alignment:
Q  345 ttgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 402  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  1527 ttgaatgaaattgatgtatgagcataattttaattaattgtgtatgttctggattgtt 1584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 467
Target Start/End: Original strand, 1659 - 1716
Alignment:
Q  411 cggagtagtaagtcatatgaaat-atatgtgtagttaagttgtatgtagatatacaca 467  Q
    |||||| |||||||||||||||  |||||  | |||||||||||||||||||||||||    
T  1659 cggagttgtaagtcatatgaaaacatatgcattgttaagttgtatgtagatatacaca 1716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 34 - 127
Target Start/End: Complemental strand, 134960 - 134867
Alignment:
Q  34 tttgattctgtcagaagttcgctcaagcgaaccgtgagcaaaccgtaagcgagctgaacccaaacttactgtaagccggtcgctcaagcgaact 127  Q
    |||||||||||||  | |||||| ||||||||||||||| | |||||||||| ||||||||| || |||||||||| ||||||| |||||||||    
T  134960 tttgattctgtcaagaattcgcttaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaact 134867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1061 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold1061
Description:

Target: scaffold1061; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 128 - 229
Target Start/End: Complemental strand, 1817 - 1716
Alignment:
Q  128 agccgtcgcttaagcgaagtggaccttagtcagccactttctgaactttgctttgtgcattgagggga-ccttttgagcattctaaaatatctctttcaa 226  Q
    |||||||||||||||||||  ||||||||||||||||||| |||| ||||| | ||||| | |||||| ||||||||||||| |||||| | ||||||||    
T  1817 agccgtcgcttaagcgaagatgaccttagtcagccactttttgaattttgcctcgtgcact-aggggatccttttgagcattttaaaatgtttctttcaa 1719  T
Q  227 ctt 229  Q
    |||    
T  1718 ctt 1716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 81 - 178
Target Start/End: Original strand, 41171 - 41267
Alignment:
Q  81 agcgagctgaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaactttgc 178  Q
    ||||||| |||||| ||| | |||| ||||| ||||| ||||||||||| ||||||||||||||||  |||||||||||| |||||| ||||||||||    
T  41171 agcgagcggaaccccaaccttctgtgagccgatcgcttaagcgaactagacgtcgcttaagcgaagatgaccttagtcagacacttt-tgaactttgc 41267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0483 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0483
Description:

Target: scaffold0483; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 49 - 180
Target Start/End: Original strand, 11569 - 11700
Alignment:
Q  49 agttcgctcaagcgaaccgtgagcaaaccgtaagcgagct-gaacccaaacttactgtaagccggtcgctcaagcgaactagccgtcgcttaagcgaagt 147  Q
    ||||||||| |||||||||  ||| | |||| |||||||  ||| |||||||| ||||| || ||||||| |||||||||| || ||||||||||||  |    
T  11569 agttcgctcgagcgaaccgcaagcgatccgtgagcgagcgagaatccaaacttcctgta-gctggtcgcttaagcgaactacccttcgcttaagcgagct 11667  T
Q  148 ggaccttagtcagccactttctgaactttgctt 180  Q
    |  |||||||||||| || ||||||||||||||    
T  11668 gagccttagtcagcctctatctgaactttgctt 11700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 49645 - 49595
Alignment:
Q  18 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgt 68  Q
    ||||||||||||||||||||||||||||  |||||||||||| ||||||||    
T  49645 gtgagcgaaaaaccattttgattctgtccaaagttcgctcaatcgaaccgt 49595  T

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Target: scaffold0337 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 397
Target Start/End: Original strand, 9958 - 10053
Alignment:
Q  302 tttggagatgactgagtatgaaatcaagtgattatatattacattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctgga 397  Q
    ||||||||||| ||||||||||| |||||||  ||||| ||  || |||||| |||||| ||  |  | ||||||||||||||||||| |||||||    
T  9958 tttggagatgattgagtatgaaaccaagtgaacatatactatgtttaatgaacttgatgcattagtttgattataattaattgtgtattttctgga 10053  T

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Target: scaffold0261 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 186
Target Start/End: Original strand, 24192 - 24267
Alignment:
Q  111 ggtcgctcaagcgaactagccgtcgcttaagcgaagtggaccttagtcagccactttctgaactttgctttgtgca 186  Q
    ||||||| |||||| ||| || ||||||||||||  ||  |||||||||| | ||||||||||||||||| |||||    
T  24192 ggtcgcttaagcgagctatccttcgcttaagcgagatgagccttagtcagtctctttctgaactttgcttcgtgca 24267  T

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Target: scaffold0261; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 24070 - 24106
Alignment:
Q  50 gttcgctcaagcgaaccgtgagcaaaccgtaagcgag 86  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  24070 gttcgcttaagcgaaccgtgagcgaaccgtaagcgag 24106  T

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Target: scaffold0106 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 467
Target Start/End: Original strand, 46685 - 46748
Alignment:
Q  405 aattttcggagtagtaagtcatatgaa-atatatgtgtagttaagttgtatgtagatatacaca 467  Q
    ||||| |||||| |||||||||||||| |||||||  | || ||||||||||||||||||||||    
T  46685 aatttgcggagttgtaagtcatatgaacatatatgcattgtcaagttgtatgtagatatacaca 46748  T

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Target: scaffold0106; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 467
Target Start/End: Original strand, 50958 - 51021
Alignment:
Q  405 aattttcggagtagtaagtcatatgaa-atatatgtgtagttaagttgtatgtagatatacaca 467  Q
    ||||| |||||| |||||||||||||| |||||||  | || ||||||||||||||||||||||    
T  50958 aatttgcggagttgtaagtcatatgaacatatatgcattgtcaagttgtatgtagatatacaca 51021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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