View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4773_high_6 (Length: 350)
Name: NF4773_high_6
Description: NF4773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4773_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 146; Significance: 7e-77; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 4212489 - 4212692
Alignment:
| Q |
1 |
aagacaaagccaaatttggattactattac-------ttggtaagtaagaaagggatattccagtaatttaacattaataaccagaactttcttcgaaat |
93 |
Q |
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| T |
4212489 |
aagacaaagccaaatttggattactattacatattacttggtaagtaagaaagggacattctagtaatt-aacattaataaccagaactttcttcgaaat |
4212587 |
T |
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| Q |
94 |
tatcctcccattcccatctacccgtctctttcaaatattaaatatcatatcaaattaatataaatatataaagtttggtattatttgtttctgcattcgc |
193 |
Q |
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| T |
4212588 |
tatcctccc------atctacccgtctctttcaaatattaaatatcatatcaaattaatataaatatataaagtttggtattatttgtttctgcattcgc |
4212681 |
T |
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| Q |
194 |
attcgcattcg |
204 |
Q |
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||||||||||| |
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| T |
4212682 |
attcgcattcg |
4212692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 239 - 328
Target Start/End: Original strand, 4212725 - 4212814
Alignment:
| Q |
239 |
gccatggattcattcgcttcgttcttcgattcaacacctcgatggaatttcaatactctcaaaaacttcaatcagatttctcctcgcgtt |
328 |
Q |
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| T |
4212725 |
gccatggattcattcgcttcgttcttcgattcaacacctcgatggaatttcaatactctcaaaaacttcaatcagatttctcctcgcgtt |
4212814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 241 - 321
Target Start/End: Complemental strand, 31161581 - 31161501
Alignment:
| Q |
241 |
catggattcattcgcttcgttcttcgattcaacacctcgatggaatttcaatactctcaaaaacttcaatcagatttctcc |
321 |
Q |
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| T |
31161581 |
catggattcattcgcttcgttcttcgattcaacacctcgatggaatttcaatactctcaaaaacttcaatcagatttctcc |
31161501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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