View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4773_low_1 (Length: 820)

Name: NF4773_low_1
Description: NF4773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4773_low_1
NF4773_low_1
[»] chr5 (7 HSPs)
chr5 (22-790)||(4273431-4274199)
chr5 (663-732)||(20982251-20982321)
chr5 (663-698)||(23137366-23137401)
chr5 (664-764)||(11457008-11457111)
chr5 (663-732)||(26516182-26516252)
chr5 (667-700)||(36539158-36539191)
chr5 (663-712)||(37873971-37874020)
[»] chr4 (4 HSPs)
chr4 (290-522)||(41211041-41211273)
chr4 (531-613)||(41211373-41211455)
chr4 (663-712)||(33640992-33641042)
chr4 (663-731)||(46053584-46053653)
[»] chr6 (11 HSPs)
chr6 (530-613)||(10151245-10151328)
chr6 (663-712)||(4247220-4247270)
chr6 (701-778)||(10400192-10400273)
chr6 (663-698)||(7268050-7268085)
chr6 (664-698)||(4003751-4003785)
chr6 (744-786)||(29274287-29274329)
chr6 (663-697)||(31807978-31808012)
chr6 (720-777)||(1904762-1904818)
chr6 (720-777)||(1908995-1909051)
chr6 (663-731)||(3155060-3155129)
chr6 (663-692)||(14340960-14340989)
[»] chr8 (3 HSPs)
chr8 (667-732)||(43208249-43208315)
chr8 (744-788)||(45071172-45071216)
chr8 (661-690)||(3179652-3179681)
[»] chr7 (4 HSPs)
chr7 (308-366)||(33196846-33196904)
chr7 (663-778)||(49060424-49060544)
chr7 (744-783)||(23918927-23918966)
chr7 (744-791)||(48157173-48157220)
[»] scaffold0426 (1 HSPs)
scaffold0426 (663-698)||(4027-4062)
[»] chr3 (4 HSPs)
chr3 (663-698)||(21574376-21574411)
chr3 (663-698)||(37308216-37308251)
chr3 (667-715)||(23785141-23785190)
chr3 (663-692)||(34857395-34857424)
[»] chr2 (2 HSPs)
chr2 (744-787)||(7103540-7103583)
chr2 (662-732)||(10198594-10198665)
[»] chr1 (4 HSPs)
chr1 (663-693)||(16322726-16322756)
chr1 (744-786)||(27738238-27738280)
chr1 (744-786)||(34179930-34179972)
chr1 (664-698)||(44936741-44936775)


Alignment Details
Target: chr5 (Bit Score: 757; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 757; E-Value: 0
Query Start/End: Original strand, 22 - 790
Target Start/End: Complemental strand, 4274199 - 4273431
Alignment:
Q  22 gcagggtatgagctgaacttgagaatggttttctatgattggagcagattttaaattttacaattatattgtctgagtcataaatttgtatttgtaaaag 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4274199 gcagggtatgagctgaacttgagaatggttttctatgattggagcagattttaaattttacaattatattgtctgagtcataaatttgtatttgtaaaag 4274100  T
Q  122 cagtttgtaagtttaacttcatcatgcatgtttcatcatcggtattatccagcacagttcttttgattgtcatcaagactaccattctcatgctttatgt 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4274099 cagtttgtaagtttaacttcatcatgcatgtttcatcatcggtattatccagcacagttcttttgattgtcatcaagactgccattctcatgctttatgt 4274000  T
Q  222 ttgtagttatgattatgaatgtaagttataaactatttaccttgcttttgagtatctacatattaaagtgtcacattttctggtgctaggttgaccctga 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4273999 ttgtagttatgattatgaatgtaagttataaactatttaccttgcttttgagtatctacatattaaagtgtcacattttctggtgctaggttgaccctga 4273900  T
Q  322 tgaagtgaatgctctagctcagctaatgacatggaagacagctgtggtagacattccatacggaggagcaaagggcggaattggctgcaacccaaaggat 421  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4273899 tgaagttaatgctcttgctcagctaatgacatggaagacagctgtggtagacattccatacggaggagcaaagggcggaattggctgcaacccaaaggat 4273800  T
Q  422 ctgagcatcagtgagctagaacgtctcactcgtgttttcacccaaaagattcatgacctcattggcattcatagggatgttcctgcccctgatatgggaa 521  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4273799 ctgagcatcagtgagctagaacgtctcactcgtgttttcacccaaaagattcatgacctcattggcattcatagggatgttcctgcccctgatatgggaa 4273700  T
Q  522 ctaattcacagacaatggcttggattcttgatgaatattcaaagtttcatggtcattcaccagcagttgtgactggcaagcctattgtaagtgtataata 621  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4273699 ctaattcacagacaatggcttggattcttgatgaatattcaaagtttcatggtcattcaccagcagttgtgactggcaagcctattgtaagtgtataata 4273600  T
Q  622 atatttcataatcactgccaactgtagttttaggccctaagttggataaacaacttaattaagtgcttatagtataattcttatcatataaatagttctg 721  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4273599 atatttcataatcactgccaactgtagttttaggccctaagttggataaacaacttaattaagtgcttatagtataattcttatcatataaatagttctg 4273500  T
Q  722 tataagctattaacgaaagataaaaataaagtcaaattgttttaaaataagctataatctgtttttaca 790  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4273499 tataagctattaacgaaagataaaaataaagtcaaattgttttaaaataagctataatctgtttttaca 4273431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 663 - 732
Target Start/End: Complemental strand, 20982321 - 20982251
Alignment:
Q  663 ttggataaacaacttaattaagtgcttatagtataa-ttcttatcatataaatagttctgtataagctatt 732  Q
    ||||||||||||||| ||||||||||||||| |||| | |||||||||||| |  || |||||||||||||    
T  20982321 ttggataaacaacttcattaagtgcttatagcataagtgcttatcatataagtgcttatgtataagctatt 20982251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 663 - 698
Target Start/End: Original strand, 23137366 - 23137401
Alignment:
Q  663 ttggataaacaacttaattaagtgcttatagtataa 698  Q
    ||||||||||||||||||| ||||||||||||||||    
T  23137366 ttggataaacaacttaattgagtgcttatagtataa 23137401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 664 - 764
Target Start/End: Original strand, 11457008 - 11457111
Alignment:
Q  664 tggataaacaacttaattaagtgcttatagtataatt-cttatcatataaatagttctgtataagctat---taacgaaagataaaaataaagtcaaatt 759  Q
    |||||||||| |||||| ||| |||||||| |||| | ||||||||| ||||  || |||||||||| |   |||||||||||| || ||||||||||||    
T  11457008 tggataaacagcttaatcaagcgcttatagcataagtgcttatcatacaaatgtttatgtataagctttctataacgaaagatataa-taaagtcaaatt 11457106  T
Q  760 gtttt 764  Q
    |||||    
T  11457107 gtttt 11457111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 663 - 732
Target Start/End: Original strand, 26516182 - 26516252
Alignment:
Q  663 ttggataaacaacttaattaagtgcttatagtataa-ttcttatcatataaatagttctgtataagctatt 732  Q
    |||||||||||||||||||||| |||||||| ||||   |||||||||||| |  || |||||||||||||    
T  26516182 ttggataaacaacttaattaagcgcttatagcataagcgcttatcatataagtgcttatgtataagctatt 26516252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 667 - 700
Target Start/End: Original strand, 36539158 - 36539191
Alignment:
Q  667 ataaacaacttaattaagtgcttatagtataatt 700  Q
    |||||| |||||||||||||||||||||||||||    
T  36539158 ataaactacttaattaagtgcttatagtataatt 36539191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 663 - 712
Target Start/End: Complemental strand, 37874020 - 37873971
Alignment:
Q  663 ttggataaacaacttaattaagtgcttatagtataattcttatcatataa 712  Q
    |||||||||| |||||||||||||||||||| || || ||||||| ||||    
T  37874020 ttggataaaccacttaattaagtgcttatagcatgatccttatcacataa 37873971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 125; Significance: 6e-64; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 290 - 522
Target Start/End: Original strand, 41211041 - 41211273
Alignment:
Q  290 tgtcacattttctggtgctaggttgaccctgatgaagtgaatgctctagctcagctaatgacatggaagacagctgtggtagacattccatacggaggag 389  Q
    ||||| ||| |||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| | ||||||||| || ||||| |    
T  41211041 tgtcaaattctctggtgccaggttgaccctgatgaggtgaatgctctagctcagcttatgacatggaagacagctgtagcagacattccttatggaggtg 41211140  T
Q  390 caaagggcggaattggctgcaacccaaaggatctgagcatcagtgagctagaacgtctcactcgtgttttcacccaaaagattcatgacctcattggcat 489  Q
    ||||||| |||||||| |||||||| | ||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||  | || ||| |    
T  41211141 caaagggtggaattggttgcaacccgagggatctgagcatcagtgagttagaacgtctaactcgggttttcacccaaaagattcatgatttaatcggcgt 41211240  T
Q  490 tcatagggatgttcctgcccctgatatgggaac 522  Q
    |||  | |||||||| || ||||||||||||||    
T  41211241 tcagcgagatgttccagctcctgatatgggaac 41211273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 531 - 613
Target Start/End: Original strand, 41211373 - 41211455
Alignment:
Q  531 agacaatggcttggattcttgatgaatattcaaagtttcatggtcattcaccagcagttgtgactggcaagcctattgtaagt 613  Q
    |||| ||||| |||||||| ||||| ||||| || |||||||| ||||| || || |||||||| || |||||||||||||||    
T  41211373 agaccatggcatggattctagatgagtattctaaatttcatggacattcgcctgctgttgtgaccggaaagcctattgtaagt 41211455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 663 - 712
Target Start/End: Original strand, 33640992 - 33641042
Alignment:
Q  663 ttggataaacaacttaattaagtgcttatagtataat-tcttatcatataa 712  Q
    ||||||||||| ||||||||||||||||||| |||||  ||||||||||||    
T  33640992 ttggataaacagcttaattaagtgcttatagaataatcgcttatcatataa 33641042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 663 - 731
Target Start/End: Original strand, 46053584 - 46053653
Alignment:
Q  663 ttggataaacaacttaattaagtgcttatagtat-aattcttatcatataaatagttctgtataagctat 731  Q
    ||||||||||| |||||||||| |||||||| || | | |||||||||||| || || ||||||||||||    
T  46053584 ttggataaacagcttaattaagcgcttatagcatgagtacttatcatataagtacttatgtataagctat 46053653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 530 - 613
Target Start/End: Original strand, 10151245 - 10151328
Alignment:
Q  530 cagacaatggcttggattcttgatgaatattcaaagtttcatggtcattcaccagcagttgtgactggcaagcctattgtaagt 613  Q
    ||||||||||| ||||| || ||||| |||||||| |||||||||||||| || ||||| |||||||| || ||||| ||||||    
T  10151245 cagacaatggcatggatactagatgagtattcaaaatttcatggtcattctcctgcagtagtgactggaaaacctatagtaagt 10151328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 663 - 712
Target Start/End: Complemental strand, 4247270 - 4247220
Alignment:
Q  663 ttggataaacaacttaattaagtgcttatagtataa-ttcttatcatataa 712  Q
    ||||||||||||||||||||||||||||||| |||| | ||||||||||||    
T  4247270 ttggataaacaacttaattaagtgcttatagcataagtacttatcatataa 4247220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 701 - 778
Target Start/End: Original strand, 10400192 - 10400273
Alignment:
Q  701 cttatcatataaatagttctgtataagctatt----aacgaaagataaaaataaagtcaaattgttttaaaataagctataa 778  Q
    ||||||||||||||  || |||||||||||||    ||  |||||||||||||||||||||||||| | | |||||||||||    
T  10400192 cttatcatataaatgtttatgtataagctattttataataaaagataaaaataaagtcaaattgttatcatataagctataa 10400273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 663 - 698
Target Start/End: Complemental strand, 7268085 - 7268050
Alignment:
Q  663 ttggataaacaacttaattaagtgcttatagtataa 698  Q
    |||||||||||||||||||||||| |||||||||||    
T  7268085 ttggataaacaacttaattaagtgtttatagtataa 7268050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 664 - 698
Target Start/End: Complemental strand, 4003785 - 4003751
Alignment:
Q  664 tggataaacaacttaattaagtgcttatagtataa 698  Q
    |||||||||||||||||||||||||||||| ||||    
T  4003785 tggataaacaacttaattaagtgcttatagcataa 4003751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 744 - 786
Target Start/End: Complemental strand, 29274329 - 29274287
Alignment:
Q  744 aaaataaagtcaaattgttttaaaataagctataatctgtttt 786  Q
    ||||||||||||||||||||| | ||||||||||| |||||||    
T  29274329 aaaataaagtcaaattgttttcatataagctataaactgtttt 29274287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 663 - 697
Target Start/End: Complemental strand, 31808012 - 31807978
Alignment:
Q  663 ttggataaacaacttaattaagtgcttatagtata 697  Q
    ||||||||||||||||||||||||||||| |||||    
T  31808012 ttggataaacaacttaattaagtgcttatggtata 31807978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 720 - 777
Target Start/End: Original strand, 1904762 - 1904818
Alignment:
Q  720 tgtataagctattaacgaaagataaaaataaagtcaaattgttttaaaataagctata 777  Q
    |||||||||||||||| ||| |||||| |||||||||||| |||| | ||||||||||    
T  1904762 tgtataagctattaactaaatataaaa-taaagtcaaattatttttatataagctata 1904818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 720 - 777
Target Start/End: Original strand, 1908995 - 1909051
Alignment:
Q  720 tgtataagctattaacgaaagataaaaataaagtcaaattgttttaaaataagctata 777  Q
    |||||||||||||||| ||| |||||| |||||||||||| |||| | ||||||||||    
T  1908995 tgtataagctattaactaaatataaaa-taaagtcaaattatttttatataagctata 1909051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 663 - 731
Target Start/End: Original strand, 3155060 - 3155129
Alignment:
Q  663 ttggataaacaacttaattaagtgcttatagtataa-ttcttatcatataaatagttctgtataagctat 731  Q
    |||||||||||||||| ||||| |||||||| ||||    ||||||||||||| ||| ||||||||||||    
T  3155060 ttggataaacaacttatttaagcgcttatagcataagcgtttatcatataaatggttatgtataagctat 3155129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 663 - 692
Target Start/End: Complemental strand, 14340989 - 14340960
Alignment:
Q  663 ttggataaacaacttaattaagtgcttata 692  Q
    ||||||||||||||||||||||||||||||    
T  14340989 ttggataaacaacttaattaagtgcttata 14340960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 667 - 732
Target Start/End: Complemental strand, 43208315 - 43208249
Alignment:
Q  667 ataaacaacttaattaagtgcttatagtataattctt-atcatataaatagttctgtataagctatt 732  Q
    ||||||||||||||||||||||||||||||||   || ||||||||| || || |||||||||||||    
T  43208315 ataaacaacttaattaagtgcttatagtataaacgttcatcatataagtatttatgtataagctatt 43208249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 744 - 788
Target Start/End: Original strand, 45071172 - 45071216
Alignment:
Q  744 aaaataaagtcaaattgttttaaaataagctataatctgttttta 788  Q
    ||||||||||||||||||||| | ||||||||||| |||||||||    
T  45071172 aaaataaagtcaaattgtttttatataagctataagctgttttta 45071216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 661 - 690
Target Start/End: Original strand, 3179652 - 3179681
Alignment:
Q  661 agttggataaacaacttaattaagtgctta 690  Q
    ||||||||||||||||||||||||||||||    
T  3179652 agttggataaacaacttaattaagtgctta 3179681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 308 - 366
Target Start/End: Original strand, 33196846 - 33196904
Alignment:
Q  308 taggttgaccctgatgaagtgaatgctctagctcagctaatgacatggaagacagctgt 366  Q
    |||||||| || ||||||||||||||| |||| || |||||||||||||| ||||||||    
T  33196846 taggttgatccagatgaagtgaatgctttagcgcaactaatgacatggaaaacagctgt 33196904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 663 - 778
Target Start/End: Original strand, 49060424 - 49060544
Alignment:
Q  663 ttggataaacaacttaattaagtgcttatagtataat-tcttatcatataaatagttctgtataagctat-----taacgaaagataaaaataaagtcaa 756  Q
    |||| |||||| ||||||||||  |||||||||||||  |||||||||||| || || ||||||||||||     |||| ||| || |||||||||||||    
T  49060424 ttgggtaaacagcttaattaagcacttatagtataatggcttatcatataagtatttatgtataagctatttctataacaaaaaat-aaaataaagtcaa 49060522  T
Q  757 attgttttaaaataagctataa 778  Q
    ||| |||| | |||||||||||    
T  49060523 attatttttatataagctataa 49060544  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 744 - 783
Target Start/End: Original strand, 23918927 - 23918966
Alignment:
Q  744 aaaataaagtcaaattgttttaaaataagctataatctgt 783  Q
    ||||||||||||||||||||| | ||||||||||||||||    
T  23918927 aaaataaagtcaaattgttttcatataagctataatctgt 23918966  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 744 - 791
Target Start/End: Complemental strand, 48157220 - 48157173
Alignment:
Q  744 aaaataaagtcaaattgttttaaaataagctataatctgtttttacaa 791  Q
    |||||||||| |||||||||||| |||||||||||| |||||| ||||    
T  48157220 aaaataaagtgaaattgttttaatataagctataatttgttttcacaa 48157173  T

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Target: scaffold0426 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0426
Description:

Target: scaffold0426; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 663 - 698
Target Start/End: Original strand, 4027 - 4062
Alignment:
Q  663 ttggataaacaacttaattaagtgcttatagtataa 698  Q
    ||||||||||||||||||| ||||||||||||||||    
T  4027 ttggataaacaacttaattgagtgcttatagtataa 4062  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 663 - 698
Target Start/End: Original strand, 21574376 - 21574411
Alignment:
Q  663 ttggataaacaacttaattaagtgcttatagtataa 698  Q
    |||||||||| |||||||||||||||||||||||||    
T  21574376 ttggataaactacttaattaagtgcttatagtataa 21574411  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 663 - 698
Target Start/End: Complemental strand, 37308251 - 37308216
Alignment:
Q  663 ttggataaacaacttaattaagtgcttatagtataa 698  Q
    ||||||||||||||||||||||||||||||| ||||    
T  37308251 ttggataaacaacttaattaagtgcttatagcataa 37308216  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 667 - 715
Target Start/End: Original strand, 23785141 - 23785190
Alignment:
Q  667 ataaacaacttaattaagtgcttatagtat-aattcttatcatataaata 715  Q
    ||||||||||||||||||||||||||| || |||  ||||||||||||||    
T  23785141 ataaacaacttaattaagtgcttatagcataaatgtttatcatataaata 23785190  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 663 - 692
Target Start/End: Original strand, 34857395 - 34857424
Alignment:
Q  663 ttggataaacaacttaattaagtgcttata 692  Q
    ||||||||||||||||||||||||||||||    
T  34857395 ttggataaacaacttaattaagtgcttata 34857424  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 744 - 787
Target Start/End: Complemental strand, 7103583 - 7103540
Alignment:
Q  744 aaaataaagtcaaattgttttaaaataagctataatctgttttt 787  Q
    |||||||||||||| |||||||| ||||||||||| ||||||||    
T  7103583 aaaataaagtcaaactgttttaatataagctataagctgttttt 7103540  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 662 - 732
Target Start/End: Complemental strand, 10198665 - 10198594
Alignment:
Q  662 gttggataaacaacttaattaagtgcttatagtat-aattcttatcatataaatagttctgtataagctatt 732  Q
    ||||||| ||||||||||||| |||||||||| || | | |||||||||||| || || |||||||||||||    
T  10198665 gttggattaacaacttaattaggtgcttatagcatgagtgcttatcatataagtacttttgtataagctatt 10198594  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 663 - 693
Target Start/End: Original strand, 16322726 - 16322756
Alignment:
Q  663 ttggataaacaacttaattaagtgcttatag 693  Q
    |||||||||||||||||||||||||||||||    
T  16322726 ttggataaacaacttaattaagtgcttatag 16322756  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 744 - 786
Target Start/End: Complemental strand, 27738280 - 27738238
Alignment:
Q  744 aaaataaagtcaaattgttttaaaataagctataatctgtttt 786  Q
    ||||||||||||||||||||| | |||||||||||| ||||||    
T  27738280 aaaataaagtcaaattgttttcatataagctataatttgtttt 27738238  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 744 - 786
Target Start/End: Complemental strand, 34179972 - 34179930
Alignment:
Q  744 aaaataaagtcaaattgttttaaaataagctataatctgtttt 786  Q
    |||||||||||||||||||||||  |||||||||| |||||||    
T  34179972 aaaataaagtcaaattgttttaatctaagctataaactgtttt 34179930  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 664 - 698
Target Start/End: Complemental strand, 44936775 - 44936741
Alignment:
Q  664 tggataaacaacttaattaagtgcttatagtataa 698  Q
    |||||||||||||||||||| ||||||||||||||    
T  44936775 tggataaacaacttaattaaatgcttatagtataa 44936741  T

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